RNA–Protein interactions for RNA: ENST00000554971.6

SHOX-204, Transcript of short stature homeobox, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHOX, Length 1,902 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-204ENST00000554971 TEX14Q8IWB6 1497 aa26.61■■□□□ 1.85
SHOX-204ENST00000554971 PPARGC1BQ86YN6 1023 aaKnown RBP26.59■■□□□ 1.85
SHOX-204ENST00000554971 FANCAO15360 1455 aa26.59■■□□□ 1.85
SHOX-204ENST00000554971 CCNB3Q8WWL7 1395 aa26.58■■□□□ 1.84
SHOX-204ENST00000554971 ARHGAP5Q13017 1502 aa26.57■■□□□ 1.84
SHOX-204ENST00000554971 ITSN2Q9NZM3 1697 aa26.56■■□□□ 1.84
SHOX-204ENST00000554971 NEO1Q92859 1461 aa26.55■■□□□ 1.84
SHOX-204ENST00000554971 PHLDB1Q86UU1 1377 aa26.54■■□□□ 1.84
SHOX-204ENST00000554971 COL17A1Q9UMD9 1497 aaPredicted RBP26.54■■□□□ 1.84
SHOX-204ENST00000554971 CFAP74Q9C0B2 1584 aa26.53■■□□□ 1.84
SHOX-204ENST00000554971 AKNAQ7Z591 1439 aa26.51■■□□□ 1.83
SHOX-204ENST00000554971 SAMD9LQ8IVG5 1584 aa26.5■■□□□ 1.83
SHOX-204ENST00000554971 MYOM3Q5VTT5 1437 aa26.49■■□□□ 1.83
SHOX-204ENST00000554971 EFCAB2Q5VUJ9 269 aa26.49■■□□□ 1.83
SHOX-204ENST00000554971 CFDP1Q9UEE9 299 aaPredicted RBP26.47■■□□□ 1.83
SHOX-204ENST00000554971 KDM6BO15054 1643 aa26.47■■□□□ 1.83
SHOX-204ENST00000554971 ADGRL1O94910 1474 aa26.45■■□□□ 1.82
SHOX-204ENST00000554971 ABCC1P33527 1531 aa26.45■■□□□ 1.82
SHOX-204ENST00000554971 ZNF644Q9H582 1327 aaPredicted RBP26.44■■□□□ 1.82
SHOX-204ENST00000554971 ARHGEF12Q9NZN5 1544 aa26.44■■□□□ 1.82
SHOX-204ENST00000554971 RICTORQ6R327 1708 aa26.42■■□□□ 1.82
SHOX-204ENST00000554971 ZNF777Q9ULD5 760 aaPredicted RBP26.42■■□□□ 1.82
SHOX-204ENST00000554971 FRMPD1Q5SYB0 1578 aa26.42■■□□□ 1.82
SHOX-204ENST00000554971 MIA2Q96PC5 1412 aa26.4■■□□□ 1.82
SHOX-204ENST00000554971 SCAPERQ9BY12 1400 aa26.4■■□□□ 1.82
SHOX-204ENST00000554971 FGD6Q6ZV73 1430 aa26.4■■□□□ 1.82
SHOX-204ENST00000554971 SYCP2Q9BX26 1530 aa26.39■■□□□ 1.82
SHOX-204ENST00000554971 CAMSAP2Q08AD1 1489 aa26.39■■□□□ 1.81
SHOX-204ENST00000554971 RAPGEF3O95398 923 aa26.37■■□□□ 1.81
SHOX-204ENST00000554971 PTPN23Q9H3S7 1636 aa26.36■■□□□ 1.81
SHOX-204ENST00000554971 DENND4BO75064 1496 aaPredicted RBP26.36■■□□□ 1.81
SHOX-204ENST00000554971 POGZQ7Z3K3 1410 aa26.35■■□□□ 1.81
SHOX-204ENST00000554971 MBD5Q9P267 1494 aa26.34■■□□□ 1.81
SHOX-204ENST00000554971 KIAA1107Q9UPP5 1409 aa26.34■■□□□ 1.81
SHOX-204ENST00000554971 TRAPPC8Q9Y2L5 1435 aa26.34■■□□□ 1.81
SHOX-204ENST00000554971 HNRNPMP52272 730 aaKnown RBP eCLIP26.32■■□□□ 1.8
SHOX-204ENST00000554971 PLEKHH2Q8IVE3 1493 aa26.32■■□□□ 1.8
SHOX-204ENST00000554971 TCOF1Q13428 1488 aaKnown RBP26.31■■□□□ 1.8
SHOX-204ENST00000554971 KDM5CP41229 1560 aa26.3■■□□□ 1.8
SHOX-204ENST00000554971 AFAP1Q8N556 730 aa26.29■■□□□ 1.8
SHOX-204ENST00000554971 ZNF518AQ6AHZ1 1483 aa26.29■■□□□ 1.8
SHOX-204ENST00000554971 ZMYM4Q5VZL5 1548 aa26.27■■□□□ 1.8
SHOX-204ENST00000554971 ARHGEF5Q12774 1597 aa26.25■■□□□ 1.79
SHOX-204ENST00000554971 RRBP1Q9P2E9 1410 aaKnown RBP26.23■■□□□ 1.79
SHOX-204ENST00000554971 CCDC141Q6ZP82 1450 aa26.21■■□□□ 1.79
SHOX-204ENST00000554971 KIDINS220Q9ULH0 1771 aa26.21■■□□□ 1.79
SHOX-204ENST00000554971 HECW2Q9P2P5 1572 aa26.2■■□□□ 1.78
SHOX-204ENST00000554971 DNMT1P26358 1616 aaKnown RBP26.2■■□□□ 1.78
SHOX-204ENST00000554971 CROCC2H7BZ55 1655 aa26.18■■□□□ 1.78
SHOX-204ENST00000554971 INO80Q9ULG1 1556 aaPredicted RBP26.18■■□□□ 1.78
SHOX-204ENST00000554971 MLH3Q9UHC1 1453 aa26.18■■□□□ 1.78
SHOX-204ENST00000554971 YEATS2Q9ULM3 1422 aa26.18■■□□□ 1.78
SHOX-204ENST00000554971 FAM50AQ14320 339 aaKnown RBP26.17■■□□□ 1.78
SHOX-204ENST00000554971 ZFYVE16Q7Z3T8 1539 aa26.17■■□□□ 1.78
SHOX-204ENST00000554971 ABCC5O15440 1437 aa26.16■■□□□ 1.78
SHOX-204ENST00000554971 ARHGEF40Q8TER5 1519 aa26.15■■□□□ 1.78
SHOX-204ENST00000554971 MAGI2Q86UL8 1455 aa26.15■■□□□ 1.78
SHOX-204ENST00000554971 DAPK1P53355 1430 aa26.14■■□□□ 1.78
SHOX-204ENST00000554971 ABCA6Q8N139 1617 aa26.14■■□□□ 1.78
SHOX-204ENST00000554971 ATP7AQ04656 1500 aa26.13■■□□□ 1.77
SHOX-204ENST00000554971 RSPH4AQ5TD94 716 aa26.13■■□□□ 1.77
SHOX-204ENST00000554971 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.13■■□□□ 1.77
SHOX-204ENST00000554971 SPAG9O60271 1321 aaKnown RBP26.12■■□□□ 1.77
SHOX-204ENST00000554971 DIP2CQ9Y2E4 1556 aa26.11■■□□□ 1.77
SHOX-204ENST00000554971 MAST1Q9Y2H9 1570 aa26.11■■□□□ 1.77
SHOX-204ENST00000554971 PTPRKQ15262 1439 aa26.1■■□□□ 1.77
SHOX-204ENST00000554971 SIGLEC1Q9BZZ2 1709 aa26.1■■□□□ 1.77
SHOX-204ENST00000554971 C9orf84Q5VXU9 1444 aa26.08■■□□□ 1.77
SHOX-204ENST00000554971 SHANK2Q9UPX8 1470 aa26.08■■□□□ 1.77
SHOX-204ENST00000554971 RTEL1-TNFRSF6BF6WH68 1400 aa26.08■■□□□ 1.76
SHOX-204ENST00000554971 ADGBQ8N7X0 1667 aa26.05■■□□□ 1.76
SHOX-204ENST00000554971 TSPY4P0CV99 314 aa26.05■■□□□ 1.76
SHOX-204ENST00000554971 TSPY10P0CW01 314 aa26.05■■□□□ 1.76
SHOX-204ENST00000554971 MYT1LQ9UL68 1186 aa26.03■■□□□ 1.76
SHOX-204ENST00000554971 ATP10AO60312 1499 aa26.02■■□□□ 1.76
SHOX-204ENST00000554971 PLXNC1O60486 1568 aa26.02■■□□□ 1.76
SHOX-204ENST00000554971 CHIC2Q9UKJ5 165 aa26■■□□□ 1.75
SHOX-204ENST00000554971 ITGAEP38570 1179 aa25.99■■□□□ 1.75
SHOX-204ENST00000554971 REREQ9P2R6 1566 aa25.99■■□□□ 1.75
SHOX-204ENST00000554971 ADGRL2O95490 1459 aa25.98■■□□□ 1.75
SHOX-204ENST00000554971 NCOA1Q15788 1441 aa25.96■■□□□ 1.75
SHOX-204ENST00000554971 A2MP01023 1474 aa25.94■■□□□ 1.74
SHOX-204ENST00000554971 CCER1Q8TC90 406 aaPredicted RBP25.92■■□□□ 1.74
SHOX-204ENST00000554971 KIF15Q9NS87 1388 aa25.91■■□□□ 1.74
SHOX-204ENST00000554971 RRP7BPQ9NSQ0 103 aa25.9■■□□□ 1.74
SHOX-204ENST00000554971 ANKRD30AQ9BXX3 1397 aa25.9■■□□□ 1.74
SHOX-204ENST00000554971 DHX29Q7Z478 1369 aaKnown RBP25.89■■□□□ 1.74
SHOX-204ENST00000554971 ROCK1Q13464 1354 aa25.89■■□□□ 1.73
SHOX-204ENST00000554971 AGLP35573 1532 aa25.88■■□□□ 1.73
SHOX-204ENST00000554971 DUOX2Q9NRD8 1548 aa25.88■■□□□ 1.73
SHOX-204ENST00000554971 BCORL1Q5H9F3 1711 aa25.85■■□□□ 1.73
SHOX-204ENST00000554971 ARID4BQ4LE39 1312 aaPredicted RBP25.83■■□□□ 1.72
SHOX-204ENST00000554971 EIF2AK4Q9P2K8 1649 aaKnown RBP25.81■■□□□ 1.72
SHOX-204ENST00000554971 ERBINQ96RT1 1412 aa25.8■■□□□ 1.72
SHOX-204ENST00000554971 GCC2Q8IWJ2 1684 aa25.79■■□□□ 1.72
SHOX-204ENST00000554971 NAIPQ13075 1403 aa25.78■■□□□ 1.72
SHOX-204ENST00000554971 ADAMTSL3P82987 1691 aa25.78■■□□□ 1.72
SHOX-204ENST00000554971 ANKRD50Q9ULJ7 1429 aa25.78■■□□□ 1.72
SHOX-204ENST00000554971 HFM1A2PYH4 1435 aa25.77■■□□□ 1.72
SHOX-204ENST00000554971 RNF17Q9BXT8 1623 aaKnown RBP25.77■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms