RNA–Protein interactions for RNA: ENST00000554264.5

VPS33B-203, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 4

Gene VPS33B, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-203ENST00000554264 PLCB2Q00722 1185 aa10.88□□□□□ -0.67
VPS33B-203ENST00000554264 RYDENQ9NUL5 291 aaKnown RBP10.85□□□□□ -0.67
VPS33B-203ENST00000554264 TMEM121BQ9BXQ6 578 aaPredicted RBP10.84□□□□□ -0.67
VPS33B-203ENST00000554264 BOLA1Q9Y3E2 137 aa10.84□□□□□ -0.67
VPS33B-203ENST00000554264 MICALL2Q8IY33 904 aa10.83□□□□□ -0.68
VPS33B-203ENST00000554264 L3MBTL3Q96JM7 780 aaPredicted RBP10.81□□□□□ -0.68
VPS33B-203ENST00000554264 LHX8Q68G74 356 aa10.8□□□□□ -0.68
VPS33B-203ENST00000554264 CADPS2Q86UW7 1296 aa10.79□□□□□ -0.68
VPS33B-203ENST00000554264 TSHZ2Q9NRE2 1034 aa10.79□□□□□ -0.68
VPS33B-203ENST00000554264 TMEM92Q6UXU6 159 aa10.76□□□□□ -0.69
VPS33B-203ENST00000554264 OTUD5Q96G74 571 aa10.76□□□□□ -0.69
VPS33B-203ENST00000554264 CUX2O14529 1486 aa10.74□□□□□ -0.69
VPS33B-203ENST00000554264 G3V3G9 751 aa10.71□□□□□ -0.69
VPS33B-203ENST00000554264 NCKAP5LQ9HCH0 1330 aa10.7□□□□□ -0.7
VPS33B-203ENST00000554264 HAP1P54257 671 aaPredicted RBP10.7□□□□□ -0.7
VPS33B-203ENST00000554264 C3orf67Q6ZVT6 689 aa10.68□□□□□ -0.7
VPS33B-203ENST00000554264 KIF3CO14782 793 aa10.67□□□□□ -0.7
VPS33B-203ENST00000554264 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.67□□□□□ -0.7
VPS33B-203ENST00000554264 ERCC6Q03468 1493 aa10.67□□□□□ -0.7
VPS33B-203ENST00000554264 MAMSTRQ6ZN01 415 aa10.66□□□□□ -0.7
VPS33B-203ENST00000554264 CRISPLD2Q9H0B8 497 aa10.66□□□□□ -0.7
VPS33B-203ENST00000554264 SCUBE2Q9NQ36 999 aa10.66□□□□□ -0.7
VPS33B-203ENST00000554264 C2orf72A6NCS6 295 aa10.65□□□□□ -0.7
VPS33B-203ENST00000554264 SLAIN1Q8ND83 568 aa10.64□□□□□ -0.71
VPS33B-203ENST00000554264 NCAPD3P42695 1498 aa10.63□□□□□ -0.71
VPS33B-203ENST00000554264 GPHNQ9NQX3 736 aaPredicted RBP10.63□□□□□ -0.71
VPS33B-203ENST00000554264 KDM2AQ9Y2K7 1162 aa10.63□□□□□ -0.71
VPS33B-203ENST00000554264 LARP6Q9BRS8 491 aaKnown RBP10.6□□□□□ -0.71
VPS33B-203ENST00000554264 PDE4AP27815 886 aa10.59□□□□□ -0.71
VPS33B-203ENST00000554264 DSG2Q14126 1118 aa10.59□□□□□ -0.71
VPS33B-203ENST00000554264 TMC2Q8TDI7 906 aa10.59□□□□□ -0.71
VPS33B-203ENST00000554264 MFSD10Q14728 455 aa10.57□□□□□ -0.72
VPS33B-203ENST00000554264 FOXK1P85037 733 aa10.56□□□□□ -0.72
VPS33B-203ENST00000554264 ATAD2BQ9ULI0 1458 aa10.55□□□□□ -0.72
VPS33B-203ENST00000554264 PPP1R15BQ5SWA1 713 aa10.53□□□□□ -0.72
VPS33B-203ENST00000554264 PLPP6Q8IY26 295 aa10.53□□□□□ -0.72
VPS33B-203ENST00000554264 DDX27Q96GQ7 796 aaKnown RBP10.53□□□□□ -0.72
VPS33B-203ENST00000554264 HMGXB3Q12766 1538 aa10.53□□□□□ -0.72
VPS33B-203ENST00000554264 SMARCA2P51531 1590 aa10.52□□□□□ -0.72
VPS33B-203ENST00000554264 VSIG10Q8N0Z9 540 aa10.52□□□□□ -0.73
VPS33B-203ENST00000554264 SLC24A1O60721 1099 aa10.51□□□□□ -0.73
VPS33B-203ENST00000554264 HOXB3P14651 431 aaPredicted RBP10.51□□□□□ -0.73
VPS33B-203ENST00000554264 NESP48681 1621 aa10.48□□□□□ -0.73
VPS33B-203ENST00000554264 EMILIN3Q9NT22 766 aa10.46□□□□□ -0.73
VPS33B-203ENST00000554264 SMARCA4P51532 1647 aa10.46□□□□□ -0.74
VPS33B-203ENST00000554264 CAMK2BQ13554 666 aa10.45□□□□□ -0.74
VPS33B-203ENST00000554264 WDR70Q9NW82 654 aa10.45□□□□□ -0.74
VPS33B-203ENST00000554264 BAZ1BQ9UIG0 1483 aaKnown RBP10.44□□□□□ -0.74
VPS33B-203ENST00000554264 THOC2Q8NI27 1593 aaKnown RBP10.43□□□□□ -0.74
VPS33B-203ENST00000554264 SLC34A2O95436 690 aa10.42□□□□□ -0.74
VPS33B-203ENST00000554264 E2F4Q16254 413 aa10.42□□□□□ -0.74
VPS33B-203ENST00000554264 BAZ1AQ9NRL2 1556 aaPredicted RBP10.41□□□□□ -0.74
VPS33B-203ENST00000554264 LAMC3Q9Y6N6 1575 aa10.41□□□□□ -0.74
VPS33B-203ENST00000554264 LCE2DQ5TA82 110 aaPredicted RBP10.41□□□□□ -0.74
VPS33B-203ENST00000554264 KCNV2Q8TDN2 545 aa10.4□□□□□ -0.74
VPS33B-203ENST00000554264 OXER1Q8TDS5 423 aa10.4□□□□□ -0.74
VPS33B-203ENST00000554264 PTCD2Q8WV60 388 aaKnown RBP10.4□□□□□ -0.74
VPS33B-203ENST00000554264 DOK7Q18PE1 504 aa10.39□□□□□ -0.75
VPS33B-203ENST00000554264 UPF1Q92900 1129 aaKnown RBP eCLIP10.39□□□□□ -0.75
VPS33B-203ENST00000554264 KHSRPQ92945 711 aaKnown RBP eCLIP10.39□□□□□ -0.75
VPS33B-203ENST00000554264 FAM163AQ96GL9 167 aaPredicted RBP10.39□□□□□ -0.75
VPS33B-203ENST00000554264 PDS5BQ9NTI5 1447 aa10.39□□□□□ -0.75
VPS33B-203ENST00000554264 SNPHO15079 494 aa10.38□□□□□ -0.75
VPS33B-203ENST00000554264 GPR153Q6NV75 609 aa10.38□□□□□ -0.75
VPS33B-203ENST00000554264 PEG3Q9GZU2 1588 aa10.38□□□□□ -0.75
VPS33B-203ENST00000554264 ST18O60284 1047 aa10.37□□□□□ -0.75
VPS33B-203ENST00000554264 ARSIQ5FYB1 569 aa10.37□□□□□ -0.75
VPS33B-203ENST00000554264 PCDHGA4Q9Y5G9 962 aa10.37□□□□□ -0.75
VPS33B-203ENST00000554264 KDM4FA0A1W2PPD8 638 aa10.35□□□□□ -0.75
VPS33B-203ENST00000554264 DPYSL4O14531 572 aa10.35□□□□□ -0.75
VPS33B-203ENST00000554264 ZNF710Q8N1W2 664 aa10.33□□□□□ -0.76
VPS33B-203ENST00000554264 ARIH1Q9Y4X5 557 aaPredicted RBP10.33□□□□□ -0.76
VPS33B-203ENST00000554264 KIF21AQ7Z4S6 1674 aa10.32□□□□□ -0.76
VPS33B-203ENST00000554264 HOXB1P14653 301 aaPredicted RBP10.32□□□□□ -0.76
VPS33B-203ENST00000554264 ZSWIM6Q9HCJ5 1215 aa10.32□□□□□ -0.76
VPS33B-203ENST00000554264 CADPSQ9ULU8 1353 aa10.3□□□□□ -0.76
VPS33B-203ENST00000554264 RIMBP2O15034 1052 aa10.3□□□□□ -0.76
VPS33B-203ENST00000554264 NUDT7P0C024 238 aa10.3□□□□□ -0.76
VPS33B-203ENST00000554264 MAP3K9P80192 1104 aa10.3□□□□□ -0.76
VPS33B-203ENST00000554264 ARHGEF1Q92888 912 aaKnown RBP10.3□□□□□ -0.76
VPS33B-203ENST00000554264 MRC2Q9UBG0 1479 aa10.3□□□□□ -0.76
VPS33B-203ENST00000554264 MROH2BQ7Z745 1585 aa10.28□□□□□ -0.76
VPS33B-203ENST00000554264 MARVELD3Q96A59 401 aa10.28□□□□□ -0.76
VPS33B-203ENST00000554264 TBC1D12O60347 775 aa10.27□□□□□ -0.77
VPS33B-203ENST00000554264 ANO8Q9HCE9 1232 aaPredicted RBP10.27□□□□□ -0.77
VPS33B-203ENST00000554264 EVI5O60447 810 aa10.26□□□□□ -0.77
VPS33B-203ENST00000554264 P3H3Q8IVL6 736 aa10.26□□□□□ -0.77
VPS33B-203ENST00000554264 WDR62O43379 1518 aa10.26□□□□□ -0.77
VPS33B-203ENST00000554264 PDIA6Q15084 440 aa10.25□□□□□ -0.77
VPS33B-203ENST00000554264 POTEB3A0JP26 581 aa10.23□□□□□ -0.77
VPS33B-203ENST00000554264 POTEBQ6S5H4 581 aa10.23□□□□□ -0.77
VPS33B-203ENST00000554264 LHX6Q9UPM6 363 aa10.23□□□□□ -0.77
VPS33B-203ENST00000554264 SEMA3EO15041 775 aa10.21□□□□□ -0.77
VPS33B-203ENST00000554264 CEP164Q9UPV0 1460 aa10.21□□□□□ -0.78
VPS33B-203ENST00000554264 ZNF316A6NFI3 1004 aaPredicted RBP10.19□□□□□ -0.78
VPS33B-203ENST00000554264 SPDYE16A6NNV3 312 aaPredicted RBP10.19□□□□□ -0.78
VPS33B-203ENST00000554264 EMP3P54852 163 aa10.19□□□□□ -0.78
VPS33B-203ENST00000554264 MLLT3P42568 568 aaPredicted RBP10.18□□□□□ -0.78
VPS33B-203ENST00000554264 FANCD2Q9BXW9 1451 aa10.17□□□□□ -0.78
VPS33B-203ENST00000554264 FAM205CA6NFA0 338 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms