RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 MTUS2Q5JR59 1369 aa18.45■□□□□ 0.54
CCDC88C-208ENST00000554165 RICTORQ6R327 1708 aa18.44■□□□□ 0.54
CCDC88C-208ENST00000554165 CDC42BPBQ9Y5S2 1711 aa18.44■□□□□ 0.54
CCDC88C-208ENST00000554165 PREX2Q70Z35 1606 aa18.41■□□□□ 0.54
CCDC88C-208ENST00000554165 POGZQ7Z3K3 1410 aa18.4■□□□□ 0.54
CCDC88C-208ENST00000554165 CDC42BPAQ5VT25 1732 aa18.4■□□□□ 0.54
CCDC88C-208ENST00000554165 GPATCH8Q9UKJ3 1502 aaKnown RBP18.4■□□□□ 0.54
CCDC88C-208ENST00000554165 AFAP1Q8N556 730 aa18.4■□□□□ 0.54
CCDC88C-208ENST00000554165 ZNF777Q9ULD5 760 aaPredicted RBP18.4■□□□□ 0.54
CCDC88C-208ENST00000554165 YEATS2Q9ULM3 1422 aa18.4■□□□□ 0.54
CCDC88C-208ENST00000554165 ARHGEF12Q9NZN5 1544 aa18.39■□□□□ 0.53
CCDC88C-208ENST00000554165 KANK4Q5T7N3 995 aaPredicted RBP18.37■□□□□ 0.53
CCDC88C-208ENST00000554165 CCNB3Q8WWL7 1395 aa18.37■□□□□ 0.53
CCDC88C-208ENST00000554165 TIAM1Q13009 1591 aa18.37■□□□□ 0.53
CCDC88C-208ENST00000554165 EHBP1L1Q8N3D4 1523 aa18.36■□□□□ 0.53
CCDC88C-208ENST00000554165 TRAPPC8Q9Y2L5 1435 aa18.36■□□□□ 0.53
CCDC88C-208ENST00000554165 ZMYM4Q5VZL5 1548 aa18.35■□□□□ 0.53
CCDC88C-208ENST00000554165 CFDP1Q9UEE9 299 aaPredicted RBP18.35■□□□□ 0.53
CCDC88C-208ENST00000554165 ARHGEF40Q8TER5 1519 aa18.34■□□□□ 0.53
CCDC88C-208ENST00000554165 ZNF644Q9H582 1327 aaPredicted RBP18.34■□□□□ 0.53
CCDC88C-208ENST00000554165 ARID4BQ4LE39 1312 aaPredicted RBP18.33■□□□□ 0.53
CCDC88C-208ENST00000554165 HNRNPMP52272 730 aaKnown RBP eCLIP18.33■□□□□ 0.52
CCDC88C-208ENST00000554165 ABCC1P33527 1531 aa18.33■□□□□ 0.52
CCDC88C-208ENST00000554165 ZFYVE16Q7Z3T8 1539 aa18.33■□□□□ 0.52
CCDC88C-208ENST00000554165 SAMD9LQ8IVG5 1584 aa18.32■□□□□ 0.52
CCDC88C-208ENST00000554165 SIGLEC1Q9BZZ2 1709 aa18.31■□□□□ 0.52
CCDC88C-208ENST00000554165 NCOA2Q15596 1464 aa18.31■□□□□ 0.52
CCDC88C-208ENST00000554165 ZNF518AQ6AHZ1 1483 aa18.31■□□□□ 0.52
CCDC88C-208ENST00000554165 LRRC9Q6ZRR7 1453 aa18.31■□□□□ 0.52
CCDC88C-208ENST00000554165 MAGI2Q86UL8 1455 aa18.29■□□□□ 0.52
CCDC88C-208ENST00000554165 MYT1LQ9UL68 1186 aa18.29■□□□□ 0.52
CCDC88C-208ENST00000554165 KDM5CP41229 1560 aa18.29■□□□□ 0.52
CCDC88C-208ENST00000554165 SYCP2Q9BX26 1530 aa18.28■□□□□ 0.52
CCDC88C-208ENST00000554165 ITSN2Q9NZM3 1697 aa18.28■□□□□ 0.52
CCDC88C-208ENST00000554165 SUPT6HQ7KZ85 1726 aaKnown RBP18.26■□□□□ 0.51
CCDC88C-208ENST00000554165 MAP3K1Q13233 1512 aa18.25■□□□□ 0.51
CCDC88C-208ENST00000554165 MLECQ14165 292 aa18.25■□□□□ 0.51
CCDC88C-208ENST00000554165 ATP10AO60312 1499 aa18.25■□□□□ 0.51
CCDC88C-208ENST00000554165 ADAMTSL3P82987 1691 aa18.23■□□□□ 0.51
CCDC88C-208ENST00000554165 HECW2Q9P2P5 1572 aa18.23■□□□□ 0.51
CCDC88C-208ENST00000554165 MLH3Q9UHC1 1453 aa18.23■□□□□ 0.51
CCDC88C-208ENST00000554165 BCORL1Q5H9F3 1711 aa18.23■□□□□ 0.51
CCDC88C-208ENST00000554165 KIAA1107Q9UPP5 1409 aa18.23■□□□□ 0.51
CCDC88C-208ENST00000554165 DIP2CQ9Y2E4 1556 aa18.21■□□□□ 0.51
CCDC88C-208ENST00000554165 ABCA6Q8N139 1617 aa18.21■□□□□ 0.51
CCDC88C-208ENST00000554165 APLP2Q06481 763 aa18.21■□□□□ 0.51
CCDC88C-208ENST00000554165 C9orf84Q5VXU9 1444 aa18.21■□□□□ 0.51
CCDC88C-208ENST00000554165 SPAG9O60271 1321 aaKnown RBP18.21■□□□□ 0.51
CCDC88C-208ENST00000554165 PLEKHH2Q8IVE3 1493 aa18.2■□□□□ 0.5
CCDC88C-208ENST00000554165 KIDINS220Q9ULH0 1771 aa18.2■□□□□ 0.5
CCDC88C-208ENST00000554165 MBD5Q9P267 1494 aa18.2■□□□□ 0.5
CCDC88C-208ENST00000554165 MADDQ8WXG6 1647 aa18.19■□□□□ 0.5
CCDC88C-208ENST00000554165 CAMSAP2Q08AD1 1489 aa18.18■□□□□ 0.5
CCDC88C-208ENST00000554165 PTPRMP28827 1452 aa18.17■□□□□ 0.5
CCDC88C-208ENST00000554165 PLPPR3Q6T4P5 718 aa18.15■□□□□ 0.5
CCDC88C-208ENST00000554165 MYOM3Q5VTT5 1437 aa18.14■□□□□ 0.49
CCDC88C-208ENST00000554165 ATP7AQ04656 1500 aa18.13■□□□□ 0.49
CCDC88C-208ENST00000554165 RIMS1Q86UR5 1692 aaKnown RBP18.13■□□□□ 0.49
CCDC88C-208ENST00000554165 INO80Q9ULG1 1556 aaPredicted RBP18.13■□□□□ 0.49
CCDC88C-208ENST00000554165 REREQ9P2R6 1566 aa18.1■□□□□ 0.49
CCDC88C-208ENST00000554165 PPARGC1BQ86YN6 1023 aaKnown RBP18.1■□□□□ 0.49
CCDC88C-208ENST00000554165 CCDC141Q6ZP82 1450 aa18.08■□□□□ 0.49
CCDC88C-208ENST00000554165 CEBPAP49715 358 aaPredicted RBP18.08■□□□□ 0.48
CCDC88C-208ENST00000554165 AGLP35573 1532 aa18.08■□□□□ 0.48
CCDC88C-208ENST00000554165 MIA2Q96PC5 1412 aa18.07■□□□□ 0.48
CCDC88C-208ENST00000554165 A2MP01023 1474 aa18.07■□□□□ 0.48
CCDC88C-208ENST00000554165 FER1L4A9Z1Z3 1794 aa18.07■□□□□ 0.48
CCDC88C-208ENST00000554165 RTEL1-TNFRSF6BF6WH68 1400 aa18.05■□□□□ 0.48
CCDC88C-208ENST00000554165 ARHGEF5Q12774 1597 aa18.04■□□□□ 0.48
CCDC88C-208ENST00000554165 RSPH4AQ5TD94 716 aa18.04■□□□□ 0.48
CCDC88C-208ENST00000554165 FGD6Q6ZV73 1430 aa18.03■□□□□ 0.48
CCDC88C-208ENST00000554165 PLXNC1O60486 1568 aa18.03■□□□□ 0.48
CCDC88C-208ENST00000554165 TSPY4P0CV99 314 aa18.02■□□□□ 0.48
CCDC88C-208ENST00000554165 TSPY10P0CW01 314 aa18.02■□□□□ 0.48
CCDC88C-208ENST00000554165 PTPN23Q9H3S7 1636 aa18.01■□□□□ 0.47
CCDC88C-208ENST00000554165 GGT6Q6P531 493 aa18.01■□□□□ 0.47
CCDC88C-208ENST00000554165 ADGBQ8N7X0 1667 aa18■□□□□ 0.47
CCDC88C-208ENST00000554165 DHX29Q7Z478 1369 aaKnown RBP18■□□□□ 0.47
CCDC88C-208ENST00000554165 ABCC5O15440 1437 aa17.98■□□□□ 0.47
CCDC88C-208ENST00000554165 TCOF1Q13428 1488 aaKnown RBP17.97■□□□□ 0.47
CCDC88C-208ENST00000554165 KIF3BO15066 747 aa17.97■□□□□ 0.47
CCDC88C-208ENST00000554165 ESF1Q9H501 851 aaKnown RBP17.97■□□□□ 0.47
CCDC88C-208ENST00000554165 FAM50AQ14320 339 aaKnown RBP17.95■□□□□ 0.46
CCDC88C-208ENST00000554165 CHIC2Q9UKJ5 165 aa17.95■□□□□ 0.46
CCDC88C-208ENST00000554165 MAST1Q9Y2H9 1570 aa17.95■□□□□ 0.46
CCDC88C-208ENST00000554165 LMTK3Q96Q04 1460 aa17.95■□□□□ 0.46
CCDC88C-208ENST00000554165 HSPA2P54652 639 aa17.94■□□□□ 0.46
CCDC88C-208ENST00000554165 DAPK1P53355 1430 aa17.94■□□□□ 0.46
CCDC88C-208ENST00000554165 RRP7BPQ9NSQ0 103 aa17.92■□□□□ 0.46
CCDC88C-208ENST00000554165 C3P01024 1663 aa17.92■□□□□ 0.46
CCDC88C-208ENST00000554165 ZMYM3Q14202 1370 aa17.91■□□□□ 0.46
CCDC88C-208ENST00000554165 DNMT1P26358 1616 aaKnown RBP17.9■□□□□ 0.46
CCDC88C-208ENST00000554165 CLTCQ00610 1675 aaKnown RBP17.9■□□□□ 0.46
CCDC88C-208ENST00000554165 CROCC2H7BZ55 1655 aa17.9■□□□□ 0.46
CCDC88C-208ENST00000554165 CNTLNQ9NXG0 1405 aa17.89■□□□□ 0.46
CCDC88C-208ENST00000554165 KIF15Q9NS87 1388 aa17.88■□□□□ 0.45
CCDC88C-208ENST00000554165 SHANK2Q9UPX8 1470 aa17.88■□□□□ 0.45
CCDC88C-208ENST00000554165 PTPRKQ15262 1439 aa17.86■□□□□ 0.45
CCDC88C-208ENST00000554165 MROH2AA6NES4 1674 aa17.84■□□□□ 0.45
CCDC88C-208ENST00000554165 WASHC2CQ9Y4E1 1318 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms