RNA–Protein interactions for RNA: ENST00000554074.1

SLIRP-203, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 3

Gene SLIRP, Length 445 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-203ENST00000554074 CASKIN1Q8WXD9 1431 aa10.84□□□□□ -0.67
SLIRP-203ENST00000554074 EHMT2Q96KQ7 1210 aa10.83□□□□□ -0.68
SLIRP-203ENST00000554074 ZFYVE16Q7Z3T8 1539 aa10.83□□□□□ -0.68
SLIRP-203ENST00000554074 CLIP1P30622 1438 aa10.83□□□□□ -0.68
SLIRP-203ENST00000554074 MADDQ8WXG6 1647 aa10.82□□□□□ -0.68
SLIRP-203ENST00000554074 POGZQ7Z3K3 1410 aa10.82□□□□□ -0.68
SLIRP-203ENST00000554074 PTPRMP28827 1452 aa10.81□□□□□ -0.68
SLIRP-203ENST00000554074 SIGLEC1Q9BZZ2 1709 aa10.81□□□□□ -0.68
SLIRP-203ENST00000554074 FYCO1Q9BQS8 1478 aa10.81□□□□□ -0.68
SLIRP-203ENST00000554074 PREX2Q70Z35 1606 aa10.8□□□□□ -0.68
SLIRP-203ENST00000554074 ATP1B4Q9UN42 357 aaPredicted RBP10.8□□□□□ -0.68
SLIRP-203ENST00000554074 SCAPERQ9BY12 1400 aa10.8□□□□□ -0.68
SLIRP-203ENST00000554074 CDC42BPAQ5VT25 1732 aa10.8□□□□□ -0.68
SLIRP-203ENST00000554074 RIMS1Q86UR5 1692 aaKnown RBP10.79□□□□□ -0.68
SLIRP-203ENST00000554074 KDM5CP41229 1560 aa10.79□□□□□ -0.68
SLIRP-203ENST00000554074 EFCAB2Q5VUJ9 269 aa10.79□□□□□ -0.68
SLIRP-203ENST00000554074 ARHGAP5Q13017 1502 aa10.79□□□□□ -0.68
SLIRP-203ENST00000554074 FER1L4A9Z1Z3 1794 aa10.78□□□□□ -0.68
SLIRP-203ENST00000554074 ZNF518AQ6AHZ1 1483 aa10.78□□□□□ -0.68
SLIRP-203ENST00000554074 YEATS2Q9ULM3 1422 aa10.77□□□□□ -0.68
SLIRP-203ENST00000554074 ITSN2Q9NZM3 1697 aa10.77□□□□□ -0.69
SLIRP-203ENST00000554074 ARID4BQ4LE39 1312 aaPredicted RBP10.77□□□□□ -0.69
SLIRP-203ENST00000554074 REREQ9P2R6 1566 aa10.76□□□□□ -0.69
SLIRP-203ENST00000554074 C9orf84Q5VXU9 1444 aa10.75□□□□□ -0.69
SLIRP-203ENST00000554074 ATP10AO60312 1499 aa10.75□□□□□ -0.69
SLIRP-203ENST00000554074 ABCC1P33527 1531 aa10.75□□□□□ -0.69
SLIRP-203ENST00000554074 SETD1BQ9UPS6 1966 aaKnown RBP10.74□□□□□ -0.69
SLIRP-203ENST00000554074 ARHGEF12Q9NZN5 1544 aa10.74□□□□□ -0.69
SLIRP-203ENST00000554074 MLH3Q9UHC1 1453 aa10.73□□□□□ -0.69
SLIRP-203ENST00000554074 DIP2CQ9Y2E4 1556 aa10.73□□□□□ -0.69
SLIRP-203ENST00000554074 ABCA6Q8N139 1617 aa10.72□□□□□ -0.69
SLIRP-203ENST00000554074 KIDINS220Q9ULH0 1771 aa10.72□□□□□ -0.69
SLIRP-203ENST00000554074 LMTK3Q96Q04 1460 aa10.71□□□□□ -0.69
SLIRP-203ENST00000554074 SAMD9LQ8IVG5 1584 aa10.69□□□□□ -0.7
SLIRP-203ENST00000554074 AGLP35573 1532 aa10.69□□□□□ -0.7
SLIRP-203ENST00000554074 GPATCH8Q9UKJ3 1502 aaKnown RBP10.69□□□□□ -0.7
SLIRP-203ENST00000554074 AFAP1Q8N556 730 aa10.69□□□□□ -0.7
SLIRP-203ENST00000554074 PREX1Q8TCU6 1659 aa10.69□□□□□ -0.7
SLIRP-203ENST00000554074 TRAPPC8Q9Y2L5 1435 aa10.68□□□□□ -0.7
SLIRP-203ENST00000554074 EHBP1L1Q8N3D4 1523 aa10.67□□□□□ -0.7
SLIRP-203ENST00000554074 PLEKHH2Q8IVE3 1493 aa10.67□□□□□ -0.7
SLIRP-203ENST00000554074 CEP162Q5TB80 1403 aa10.67□□□□□ -0.7
SLIRP-203ENST00000554074 KIAA1107Q9UPP5 1409 aa10.67□□□□□ -0.7
SLIRP-203ENST00000554074 SYCP2Q9BX26 1530 aa10.66□□□□□ -0.7
SLIRP-203ENST00000554074 C3P01024 1663 aa10.65□□□□□ -0.7
SLIRP-203ENST00000554074 TIAM1Q13009 1591 aa10.65□□□□□ -0.71
SLIRP-203ENST00000554074 INO80Q9ULG1 1556 aaPredicted RBP10.65□□□□□ -0.71
SLIRP-203ENST00000554074 MTUS2Q5JR59 1369 aa10.65□□□□□ -0.71
SLIRP-203ENST00000554074 MROH2AA6NES4 1674 aa10.64□□□□□ -0.71
SLIRP-203ENST00000554074 MLECQ14165 292 aa10.64□□□□□ -0.71
SLIRP-203ENST00000554074 CCNB3Q8WWL7 1395 aa10.64□□□□□ -0.71
SLIRP-203ENST00000554074 ATP7AQ04656 1500 aa10.63□□□□□ -0.71
SLIRP-203ENST00000554074 ADGBQ8N7X0 1667 aa10.63□□□□□ -0.71
SLIRP-203ENST00000554074 SUPT6HQ7KZ85 1726 aaKnown RBP10.63□□□□□ -0.71
SLIRP-203ENST00000554074 PLXNC1O60486 1568 aa10.62□□□□□ -0.71
SLIRP-203ENST00000554074 MYT1LQ9UL68 1186 aa10.62□□□□□ -0.71
SLIRP-203ENST00000554074 CFDP1Q9UEE9 299 aaPredicted RBP10.61□□□□□ -0.71
SLIRP-203ENST00000554074 CNTLNQ9NXG0 1405 aa10.6□□□□□ -0.71
SLIRP-203ENST00000554074 ZNF777Q9ULD5 760 aaPredicted RBP10.6□□□□□ -0.71
SLIRP-203ENST00000554074 SPAG9O60271 1321 aaKnown RBP10.59□□□□□ -0.71
SLIRP-203ENST00000554074 STRCQ7RTU9 1775 aa10.59□□□□□ -0.71
SLIRP-203ENST00000554074 MBD5Q9P267 1494 aa10.58□□□□□ -0.72
SLIRP-203ENST00000554074 HNRNPMP52272 730 aaKnown RBP eCLIP10.58□□□□□ -0.725e-9■■■■■ 34.7
SLIRP-203ENST00000554074 MAP3K1Q13233 1512 aa10.58□□□□□ -0.72
SLIRP-203ENST00000554074 VPS8Q8N3P4 1428 aa10.58□□□□□ -0.72
SLIRP-203ENST00000554074 A2MP01023 1474 aa10.57□□□□□ -0.72
SLIRP-203ENST00000554074 HSPA2P54652 639 aa10.57□□□□□ -0.72
SLIRP-203ENST00000554074 PLPPR3Q6T4P5 718 aa10.57□□□□□ -0.72
SLIRP-203ENST00000554074 RTEL1-TNFRSF6BF6WH68 1400 aa10.57□□□□□ -0.72
SLIRP-203ENST00000554074 UHRF1BP1Q6BDS2 1440 aa10.57□□□□□ -0.72
SLIRP-203ENST00000554074 CLTCQ00610 1675 aaKnown RBP10.57□□□□□ -0.72
SLIRP-203ENST00000554074 NCOA2Q15596 1464 aa10.56□□□□□ -0.72
SLIRP-203ENST00000554074 CEBPAP49715 358 aaPredicted RBP10.56□□□□□ -0.72
SLIRP-203ENST00000554074 FBXO41Q8TF61 875 aa10.56□□□□□ -0.72
SLIRP-203ENST00000554074 ESF1Q9H501 851 aaKnown RBP10.56□□□□□ -0.72
SLIRP-203ENST00000554074 NPATQ14207 1427 aa10.55□□□□□ -0.72
SLIRP-203ENST00000554074 ARHGEF5Q12774 1597 aa10.55□□□□□ -0.72
SLIRP-203ENST00000554074 CAMSAP2Q08AD1 1489 aa10.54□□□□□ -0.72
SLIRP-203ENST00000554074 CCDC141Q6ZP82 1450 aa10.54□□□□□ -0.72
SLIRP-203ENST00000554074 LRRC9Q6ZRR7 1453 aa10.54□□□□□ -0.72
SLIRP-203ENST00000554074 ZNF142P52746 1687 aaPredicted RBP10.53□□□□□ -0.72
SLIRP-203ENST00000554074 FAM135AQ9P2D6 1515 aa10.53□□□□□ -0.72
SLIRP-203ENST00000554074 RSPH4AQ5TD94 716 aa10.53□□□□□ -0.72
SLIRP-203ENST00000554074 PPP6R1Q9UPN7 881 aa10.53□□□□□ -0.72
SLIRP-203ENST00000554074 ZNF644Q9H582 1327 aaPredicted RBP10.53□□□□□ -0.72
SLIRP-203ENST00000554074 DMRT2Q9Y5R5 561 aa10.52□□□□□ -0.73
SLIRP-203ENST00000554074 ZMYM3Q14202 1370 aa10.52□□□□□ -0.73
SLIRP-203ENST00000554074 MYO3AQ8NEV4 1616 aa10.51□□□□□ -0.73
SLIRP-203ENST00000554074 MAST1Q9Y2H9 1570 aa10.51□□□□□ -0.73
SLIRP-203ENST00000554074 LOC105371045A0A1W2PR82 267 aa10.5□□□□□ -0.73
SLIRP-203ENST00000554074 DHX29Q7Z478 1369 aaKnown RBP10.5□□□□□ -0.73
SLIRP-203ENST00000554074 PTPRTO14522 1441 aa10.5□□□□□ -0.73
SLIRP-203ENST00000554074 PTPRKQ15262 1439 aa10.49□□□□□ -0.73
SLIRP-203ENST00000554074 MIA2Q96PC5 1412 aa10.49□□□□□ -0.73
SLIRP-203ENST00000554074 NCOA1Q15788 1441 aa10.48□□□□□ -0.73
SLIRP-203ENST00000554074 CEP170BQ9Y4F5 1589 aaPredicted RBP10.48□□□□□ -0.73
SLIRP-203ENST00000554074 RNF17Q9BXT8 1623 aaKnown RBP10.47□□□□□ -0.73
SLIRP-203ENST00000554074 EIF2AK4Q9P2K8 1649 aaKnown RBP10.47□□□□□ -0.73
SLIRP-203ENST00000554074 MYOM3Q5VTT5 1437 aa10.47□□□□□ -0.73
SLIRP-203ENST00000554074 PLA2R1Q13018 1463 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 99.3 ms