RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 TSPOAP1O95153 1857 aa18.92■□□□□ 0.62
SHMT2-209ENST00000553949 PREX2Q70Z35 1606 aa18.92■□□□□ 0.62
SHMT2-209ENST00000553949 MYOM3Q5VTT5 1437 aa18.91■□□□□ 0.62
SHMT2-209ENST00000553949 CDC42BPAQ5VT25 1732 aa18.91■□□□□ 0.62
SHMT2-209ENST00000553949 NEO1Q92859 1461 aa18.9■□□□□ 0.62
SHMT2-209ENST00000553949 ZNF777Q9ULD5 760 aaPredicted RBP18.88■□□□□ 0.61
SHMT2-209ENST00000553949 AKNAQ7Z591 1439 aa18.88■□□□□ 0.61
SHMT2-209ENST00000553949 ITSN2Q9NZM3 1697 aa18.88■□□□□ 0.61
SHMT2-209ENST00000553949 CDC42BPBQ9Y5S2 1711 aa18.88■□□□□ 0.61
SHMT2-209ENST00000553949 MIA2Q96PC5 1412 aa18.87■□□□□ 0.61
SHMT2-209ENST00000553949 CFAP74Q9C0B2 1584 aa18.86■□□□□ 0.61
SHMT2-209ENST00000553949 FGD6Q6ZV73 1430 aa18.84■□□□□ 0.61
SHMT2-209ENST00000553949 ZNF644Q9H582 1327 aaPredicted RBP18.84■□□□□ 0.61
SHMT2-209ENST00000553949 ADGRL1O94910 1474 aa18.84■□□□□ 0.61
SHMT2-209ENST00000553949 SAMD9LQ8IVG5 1584 aa18.82■□□□□ 0.6
SHMT2-209ENST00000553949 SCAPERQ9BY12 1400 aa18.81■□□□□ 0.6
SHMT2-209ENST00000553949 KIAA1107Q9UPP5 1409 aa18.81■□□□□ 0.6
SHMT2-209ENST00000553949 ABCC1P33527 1531 aa18.8■□□□□ 0.6
SHMT2-209ENST00000553949 CAMSAP2Q08AD1 1489 aa18.8■□□□□ 0.6
SHMT2-209ENST00000553949 PLEKHH2Q8IVE3 1493 aa18.8■□□□□ 0.6
SHMT2-209ENST00000553949 COL17A1Q9UMD9 1497 aaPredicted RBP18.79■□□□□ 0.6
SHMT2-209ENST00000553949 ARHGEF12Q9NZN5 1544 aa18.79■□□□□ 0.6
SHMT2-209ENST00000553949 DENND4BO75064 1496 aaPredicted RBP18.78■□□□□ 0.6
SHMT2-209ENST00000553949 HNRNPMP52272 730 aaKnown RBP eCLIP18.78■□□□□ 0.6
SHMT2-209ENST00000553949 PTPN23Q9H3S7 1636 aa18.78■□□□□ 0.6
SHMT2-209ENST00000553949 TCOF1Q13428 1488 aaKnown RBP18.77■□□□□ 0.6
SHMT2-209ENST00000553949 RAPGEF3O95398 923 aa18.77■□□□□ 0.6
SHMT2-209ENST00000553949 SYCP2Q9BX26 1530 aa18.76■□□□□ 0.59
SHMT2-209ENST00000553949 POGZQ7Z3K3 1410 aa18.75■□□□□ 0.59
SHMT2-209ENST00000553949 RRBP1Q9P2E9 1410 aaKnown RBP18.75■□□□□ 0.59
SHMT2-209ENST00000553949 KDM6BO15054 1643 aa18.75■□□□□ 0.59
SHMT2-209ENST00000553949 FAM50AQ14320 339 aaKnown RBP18.75■□□□□ 0.59
SHMT2-209ENST00000553949 MBD5Q9P267 1494 aa18.75■□□□□ 0.59
SHMT2-209ENST00000553949 TRAPPC8Q9Y2L5 1435 aa18.74■□□□□ 0.59
SHMT2-209ENST00000553949 AFAP1Q8N556 730 aa18.73■□□□□ 0.59
SHMT2-209ENST00000553949 ZNF518AQ6AHZ1 1483 aa18.72■□□□□ 0.59
SHMT2-209ENST00000553949 RSPH4AQ5TD94 716 aa18.72■□□□□ 0.59
SHMT2-209ENST00000553949 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.7■□□□□ 0.58
SHMT2-209ENST00000553949 FRMPD1Q5SYB0 1578 aa18.7■□□□□ 0.58
SHMT2-209ENST00000553949 CCDC141Q6ZP82 1450 aa18.7■□□□□ 0.58
SHMT2-209ENST00000553949 ARHGEF5Q12774 1597 aa18.69■□□□□ 0.58
SHMT2-209ENST00000553949 RICTORQ6R327 1708 aa18.69■□□□□ 0.58
SHMT2-209ENST00000553949 ABCC5O15440 1437 aa18.67■□□□□ 0.58
SHMT2-209ENST00000553949 KDM5CP41229 1560 aa18.67■□□□□ 0.58
SHMT2-209ENST00000553949 SPAG9O60271 1321 aaKnown RBP18.66■□□□□ 0.58
SHMT2-209ENST00000553949 DAPK1P53355 1430 aa18.66■□□□□ 0.58
SHMT2-209ENST00000553949 ZMYM4Q5VZL5 1548 aa18.65■□□□□ 0.58
SHMT2-209ENST00000553949 TSPY4P0CV99 314 aa18.65■□□□□ 0.58
SHMT2-209ENST00000553949 TSPY10P0CW01 314 aa18.65■□□□□ 0.58
SHMT2-209ENST00000553949 MLH3Q9UHC1 1453 aa18.64■□□□□ 0.57
SHMT2-209ENST00000553949 DNMT1P26358 1616 aaKnown RBP18.63■□□□□ 0.57
SHMT2-209ENST00000553949 MYT1LQ9UL68 1186 aa18.63■□□□□ 0.57
SHMT2-209ENST00000553949 MAGI2Q86UL8 1455 aa18.63■□□□□ 0.57
SHMT2-209ENST00000553949 ITGAEP38570 1179 aa18.62■□□□□ 0.57
SHMT2-209ENST00000553949 SHANK2Q9UPX8 1470 aa18.61■□□□□ 0.57
SHMT2-209ENST00000553949 C9orf84Q5VXU9 1444 aa18.61■□□□□ 0.57
SHMT2-209ENST00000553949 HECW2Q9P2P5 1572 aa18.6■□□□□ 0.57
SHMT2-209ENST00000553949 RTEL1-TNFRSF6BF6WH68 1400 aa18.6■□□□□ 0.57
SHMT2-209ENST00000553949 PTPRKQ15262 1439 aa18.6■□□□□ 0.57
SHMT2-209ENST00000553949 ZFYVE16Q7Z3T8 1539 aa18.59■□□□□ 0.57
SHMT2-209ENST00000553949 YEATS2Q9ULM3 1422 aa18.59■□□□□ 0.57
SHMT2-209ENST00000553949 ATP7AQ04656 1500 aa18.59■□□□□ 0.57
SHMT2-209ENST00000553949 CHIC2Q9UKJ5 165 aa18.58■□□□□ 0.56
SHMT2-209ENST00000553949 INO80Q9ULG1 1556 aaPredicted RBP18.58■□□□□ 0.56
SHMT2-209ENST00000553949 MAST1Q9Y2H9 1570 aa18.58■□□□□ 0.56
SHMT2-209ENST00000553949 CROCC2H7BZ55 1655 aa18.57■□□□□ 0.56
SHMT2-209ENST00000553949 KIDINS220Q9ULH0 1771 aa18.56■□□□□ 0.56
SHMT2-209ENST00000553949 ARHGEF40Q8TER5 1519 aa18.55■□□□□ 0.56
SHMT2-209ENST00000553949 ANKRD30AQ9BXX3 1397 aa18.54■□□□□ 0.56
SHMT2-209ENST00000553949 ADGRL2O95490 1459 aa18.53■□□□□ 0.56
SHMT2-209ENST00000553949 NCOA1Q15788 1441 aa18.53■□□□□ 0.56
SHMT2-209ENST00000553949 DIP2CQ9Y2E4 1556 aa18.53■□□□□ 0.56
SHMT2-209ENST00000553949 ABCA6Q8N139 1617 aa18.52■□□□□ 0.56
SHMT2-209ENST00000553949 ATP10AO60312 1499 aa18.52■□□□□ 0.56
SHMT2-209ENST00000553949 RRP7BPQ9NSQ0 103 aa18.52■□□□□ 0.56
SHMT2-209ENST00000553949 ROCK1Q13464 1354 aa18.52■□□□□ 0.55
SHMT2-209ENST00000553949 TRIM26Q12899 539 aaPredicted RBP18.5■□□□□ 0.55
SHMT2-209ENST00000553949 KIF15Q9NS87 1388 aa18.5■□□□□ 0.55
SHMT2-209ENST00000553949 PLXNC1O60486 1568 aa18.5■□□□□ 0.55
SHMT2-209ENST00000553949 A2MP01023 1474 aa18.48■□□□□ 0.55
SHMT2-209ENST00000553949 DHX29Q7Z478 1369 aaKnown RBP18.48■□□□□ 0.55
SHMT2-209ENST00000553949 ADGBQ8N7X0 1667 aa18.47■□□□□ 0.55
SHMT2-209ENST00000553949 REREQ9P2R6 1566 aa18.47■□□□□ 0.55
SHMT2-209ENST00000553949 DUOX2Q9NRD8 1548 aa18.45■□□□□ 0.54
SHMT2-209ENST00000553949 ARID4BQ4LE39 1312 aaPredicted RBP18.43■□□□□ 0.54
SHMT2-209ENST00000553949 HFM1A2PYH4 1435 aa18.41■□□□□ 0.54
SHMT2-209ENST00000553949 ERBINQ96RT1 1412 aa18.41■□□□□ 0.54
SHMT2-209ENST00000553949 ANKRD50Q9ULJ7 1429 aa18.41■□□□□ 0.54
SHMT2-209ENST00000553949 AGLP35573 1532 aa18.41■□□□□ 0.54
SHMT2-209ENST00000553949 NAIPQ13075 1403 aa18.4■□□□□ 0.54
SHMT2-209ENST00000553949 SIGLEC1Q9BZZ2 1709 aa18.4■□□□□ 0.54
SHMT2-209ENST00000553949 KIF3BO15066 747 aa18.39■□□□□ 0.53
SHMT2-209ENST00000553949 EIF2AK4Q9P2K8 1649 aaKnown RBP18.35■□□□□ 0.53
SHMT2-209ENST00000553949 MLECQ14165 292 aa18.35■□□□□ 0.53
SHMT2-209ENST00000553949 GGT6Q6P531 493 aa18.34■□□□□ 0.53
SHMT2-209ENST00000553949 SETD5Q9C0A6 1442 aa18.33■□□□□ 0.53
SHMT2-209ENST00000553949 GCC2Q8IWJ2 1684 aa18.33■□□□□ 0.52
SHMT2-209ENST00000553949 BCORL1Q5H9F3 1711 aa18.32■□□□□ 0.52
SHMT2-209ENST00000553949 PCGF6Q9BYE7 350 aa18.3■□□□□ 0.52
SHMT2-209ENST00000553949 RNF17Q9BXT8 1623 aaKnown RBP18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 138.7 ms