RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 RGL2O15211 777 aa9.11□□□□□ -0.95
VTI1B-202ENST00000553619 TAOK2Q9UL54 1235 aa9.1□□□□□ -0.95
VTI1B-202ENST00000553619 STK25O00506 426 aa9.09□□□□□ -0.95
VTI1B-202ENST00000553619 FBXO22Q8NEZ5 403 aa9.09□□□□□ -0.95
VTI1B-202ENST00000553619 POTEB3A0JP26 581 aa9.08□□□□□ -0.96
VTI1B-202ENST00000553619 NLRP6P59044 892 aa9.08□□□□□ -0.96
VTI1B-202ENST00000553619 POTEBQ6S5H4 581 aa9.08□□□□□ -0.96
VTI1B-202ENST00000553619 SCRIBQ14160 1630 aa9.08□□□□□ -0.96
VTI1B-202ENST00000553619 MFRPQ9BY79 579 aa9.07□□□□□ -0.96
VTI1B-202ENST00000553619 FAM205CA6NFA0 338 aa9.06□□□□□ -0.96
VTI1B-202ENST00000553619 HS3ST6Q96QI5 342 aa9.06□□□□□ -0.96
VTI1B-202ENST00000553619 DOK7Q18PE1 504 aa9.05□□□□□ -0.96
VTI1B-202ENST00000553619 ZNF710Q8N1W2 664 aa9.04□□□□□ -0.96
VTI1B-202ENST00000553619 HOXB1P14653 301 aaPredicted RBP9.03□□□□□ -0.96
VTI1B-202ENST00000553619 KRTAP3-3Q9BYR6 98 aa9.01□□□□□ -0.97
VTI1B-202ENST00000553619 KRTAP3-2Q9BYR7 98 aa9.01□□□□□ -0.97
VTI1B-202ENST00000553619 UNC13AQ9UPW8 1703 aa9.01□□□□□ -0.97
VTI1B-202ENST00000553619 SPNS2Q8IVW8 549 aa9□□□□□ -0.97
VTI1B-202ENST00000553619 RIMBP2O15034 1052 aa8.99□□□□□ -0.97
VTI1B-202ENST00000553619 MMRN1Q13201 1228 aa8.97□□□□□ -0.97
VTI1B-202ENST00000553619 ERBB3P21860 1342 aa8.96□□□□□ -0.98
VTI1B-202ENST00000553619 GPR153Q6NV75 609 aa8.94□□□□□ -0.98
VTI1B-202ENST00000553619 ZSWIM6Q9HCJ5 1215 aa8.94□□□□□ -0.98
VTI1B-202ENST00000553619 KIF3CO14782 793 aa8.93□□□□□ -0.98
VTI1B-202ENST00000553619 VARS2Q5ST30 1063 aaKnown RBP8.93□□□□□ -0.98
VTI1B-202ENST00000553619 C2orf72A6NCS6 295 aa8.92□□□□□ -0.98
VTI1B-202ENST00000553619 PPP1R37O75864 691 aa8.92□□□□□ -0.98
VTI1B-202ENST00000553619 BICRAQ9NZM4 1560 aa8.91□□□□□ -0.98
VTI1B-202ENST00000553619 ARSIQ5FYB1 569 aa8.91□□□□□ -0.98
VTI1B-202ENST00000553619 KHSRPQ92945 711 aaKnown RBP eCLIP8.9□□□□□ -0.98
VTI1B-202ENST00000553619 HS6ST3Q8IZP7 471 aa8.89□□□□□ -0.99
VTI1B-202ENST00000553619 CHGAP10645 457 aaKnown RBP8.85□□□□□ -0.99
VTI1B-202ENST00000553619 TMC2Q8TDI7 906 aa8.85□□□□□ -0.99
VTI1B-202ENST00000553619 ZNF687Q8N1G0 1237 aa8.84□□□□□ -0.99
VTI1B-202ENST00000553619 ZNF316A6NFI3 1004 aaPredicted RBP8.82□□□□□ -1
VTI1B-202ENST00000553619 NUDT7P0C024 238 aa8.81□□□□□ -1
VTI1B-202ENST00000553619 NKX1-1Q15270 411 aaPredicted RBP8.81□□□□□ -1
VTI1B-202ENST00000553619 SUPT5HO00267 1087 aaKnown RBP8.8□□□□□ -1
VTI1B-202ENST00000553619 PCDHGA4Q9Y5G9 962 aa8.8□□□□□ -1
VTI1B-202ENST00000553619 BAZ1AQ9NRL2 1556 aaPredicted RBP8.79□□□□□ -1
VTI1B-202ENST00000553619 SLC34A2O95436 690 aa8.79□□□□□ -1
VTI1B-202ENST00000553619 CECR2Q9BXF3 1484 aa8.77□□□□□ -1
VTI1B-202ENST00000553619 DNAJC5Q9H3Z4 198 aa8.77□□□□□ -1.01
VTI1B-202ENST00000553619 LHX6Q9UPM6 363 aa8.77□□□□□ -1.01
VTI1B-202ENST00000553619 RSF1Q96T23 1441 aaPredicted RBP8.74□□□□□ -1.01
VTI1B-202ENST00000553619 FOXK1P85037 733 aa8.74□□□□□ -1.01
VTI1B-202ENST00000553619 PLPP6Q8IY26 295 aa8.74□□□□□ -1.01
VTI1B-202ENST00000553619 GPHNQ9NQX3 736 aaPredicted RBP8.74□□□□□ -1.01
VTI1B-202ENST00000553619 SMARCA4P51532 1647 aa8.73□□□□□ -1.01
VTI1B-202ENST00000553619 DSG2Q14126 1118 aa8.73□□□□□ -1.01
VTI1B-202ENST00000553619 RNF166Q96A37 237 aaPredicted RBP8.73□□□□□ -1.01
VTI1B-202ENST00000553619 MYT1LQ9UL68 1186 aa8.72□□□□□ -1.01
VTI1B-202ENST00000553619 MROH2BQ7Z745 1585 aa8.72□□□□□ -1.01
VTI1B-202ENST00000553619 LSM11P83369 360 aaKnown RBP eCLIP8.71□□□□□ -1.02
VTI1B-202ENST00000553619 POTEEQ6S8J3 1075 aa8.71□□□□□ -1.02
VTI1B-202ENST00000553619 ANKRD13DQ6ZTN6 518 aa8.71□□□□□ -1.02
VTI1B-202ENST00000553619 KDM4FA0A1W2PPD8 638 aa8.7□□□□□ -1.02
VTI1B-202ENST00000553619 PTCD2Q8WV60 388 aaKnown RBP8.7□□□□□ -1.02
VTI1B-202ENST00000553619 AXIN2Q9Y2T1 843 aa8.7□□□□□ -1.02
VTI1B-202ENST00000553619 EIF4G1Q04637 1599 aaKnown RBP8.69□□□□□ -1.02
VTI1B-202ENST00000553619 PBX2P40425 430 aa8.68□□□□□ -1.02
VTI1B-202ENST00000553619 RYDENQ9NUL5 291 aaKnown RBP8.68□□□□□ -1.02
VTI1B-202ENST00000553619 SMARCA2P51531 1590 aa8.67□□□□□ -1.02
VTI1B-202ENST00000553619 CRISPLD2Q9H0B8 497 aa8.67□□□□□ -1.02
VTI1B-202ENST00000553619 GTPBP6O43824 516 aaPredicted RBP8.65□□□□□ -1.02
VTI1B-202ENST00000553619 PTGER2P43116 358 aa8.65□□□□□ -1.02
VTI1B-202ENST00000553619 WIZO95785 1651 aa8.65□□□□□ -1.03
VTI1B-202ENST00000553619 PEG3Q9GZU2 1588 aa8.65□□□□□ -1.03
VTI1B-202ENST00000553619 ATAD2BQ9ULI0 1458 aa8.64□□□□□ -1.03
VTI1B-202ENST00000553619 NCKAP5LQ9HCH0 1330 aa8.63□□□□□ -1.03
VTI1B-202ENST00000553619 PSDA5PKW4 1024 aaPredicted RBP8.63□□□□□ -1.03
VTI1B-202ENST00000553619 PPP1R15BQ5SWA1 713 aa8.63□□□□□ -1.03
VTI1B-202ENST00000553619 UPF1Q92900 1129 aaKnown RBP eCLIP8.63□□□□□ -1.03
VTI1B-202ENST00000553619 OXER1Q8TDS5 423 aa8.62□□□□□ -1.03
VTI1B-202ENST00000553619 ARHGAP33O14559 1287 aa8.61□□□□□ -1.03
VTI1B-202ENST00000553619 TBC1D12O60347 775 aa8.61□□□□□ -1.03
VTI1B-202ENST00000553619 AMER1Q5JTC6 1135 aaPredicted RBP8.61□□□□□ -1.03
VTI1B-202ENST00000553619 NCAPD3P42695 1498 aa8.61□□□□□ -1.03
VTI1B-202ENST00000553619 BAZ1BQ9UIG0 1483 aaKnown RBP8.59□□□□□ -1.03
VTI1B-202ENST00000553619 CC2D2AQ9P2K1 1620 aa8.59□□□□□ -1.03
VTI1B-202ENST00000553619 PSEN2P49810 448 aa8.59□□□□□ -1.03
VTI1B-202ENST00000553619 DMRTA1Q5VZB9 504 aa8.59□□□□□ -1.03
VTI1B-202ENST00000553619 PPP4R3BQ5MIZ7 849 aa8.58□□□□□ -1.04
VTI1B-202ENST00000553619 ADGRD1Q6QNK2 874 aa8.58□□□□□ -1.04
VTI1B-202ENST00000553619 TOP2AP11388 1531 aaKnown RBP8.58□□□□□ -1.04
VTI1B-202ENST00000553619 PDE4AP27815 886 aa8.57□□□□□ -1.04
VTI1B-202ENST00000553619 HMGXB3Q12766 1538 aa8.57□□□□□ -1.04
VTI1B-202ENST00000553619 LARP6Q9BRS8 491 aaKnown RBP8.55□□□□□ -1.04
VTI1B-202ENST00000553619 KCNK17Q96T54 332 aa8.54□□□□□ -1.04
VTI1B-202ENST00000553619 TK2O00142 265 aa8.53□□□□□ -1.04
VTI1B-202ENST00000553619 MFSD10Q14728 455 aa8.53□□□□□ -1.04
VTI1B-202ENST00000553619 CADPS2Q86UW7 1296 aa8.53□□□□□ -1.04
VTI1B-202ENST00000553619 ZNF454Q8N9F8 522 aa8.53□□□□□ -1.04
VTI1B-202ENST00000553619 DDX27Q96GQ7 796 aaKnown RBP8.53□□□□□ -1.04
VTI1B-202ENST00000553619 HRO43593 1189 aa8.52□□□□□ -1.05
VTI1B-202ENST00000553619 FOSBP53539 338 aa8.5□□□□□ -1.05
VTI1B-202ENST00000553619 CCDC88BA6NC98 1476 aa8.5□□□□□ -1.05
VTI1B-202ENST00000553619 EVI5O60447 810 aa8.49□□□□□ -1.05
VTI1B-202ENST00000553619 EMILIN3Q9NT22 766 aa8.49□□□□□ -1.05
VTI1B-202ENST00000553619 BCL2L12Q9HB09 334 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms