RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 MAGI2Q86UL8 1455 aa24.23■■□□□ 1.47
SHMT2-204ENST00000553324 POGZQ7Z3K3 1410 aa24.21■■□□□ 1.47
SHMT2-204ENST00000553324 CCNB3Q8WWL7 1395 aa24.21■■□□□ 1.47
SHMT2-204ENST00000553324 CFDP1Q9UEE9 299 aaPredicted RBP24.21■■□□□ 1.47
SHMT2-204ENST00000553324 FRMPD1Q5SYB0 1578 aa24.2■■□□□ 1.46
SHMT2-204ENST00000553324 GPATCH8Q9UKJ3 1502 aaKnown RBP24.19■■□□□ 1.46
SHMT2-204ENST00000553324 AFAP1Q8N556 730 aa24.18■■□□□ 1.46
SHMT2-204ENST00000553324 ZNF777Q9ULD5 760 aaPredicted RBP24.18■■□□□ 1.46
SHMT2-204ENST00000553324 ARID4BQ4LE39 1312 aaPredicted RBP24.17■■□□□ 1.46
SHMT2-204ENST00000553324 RICTORQ6R327 1708 aa24.17■■□□□ 1.46
SHMT2-204ENST00000553324 ZNF518AQ6AHZ1 1483 aa24.17■■□□□ 1.46
SHMT2-204ENST00000553324 EHBP1L1Q8N3D4 1523 aa24.16■■□□□ 1.46
SHMT2-204ENST00000553324 APLP2Q06481 763 aa24.16■■□□□ 1.46
SHMT2-204ENST00000553324 ZMYM4Q5VZL5 1548 aa24.15■■□□□ 1.46
SHMT2-204ENST00000553324 PREX2Q70Z35 1606 aa24.15■■□□□ 1.46
SHMT2-204ENST00000553324 MYT1LQ9UL68 1186 aa24.14■■□□□ 1.45
SHMT2-204ENST00000553324 CDC42BPBQ9Y5S2 1711 aa24.13■■□□□ 1.45
SHMT2-204ENST00000553324 MAP3K1Q13233 1512 aa24.11■■□□□ 1.45
SHMT2-204ENST00000553324 ZFYVE16Q7Z3T8 1539 aa24.1■■□□□ 1.45
SHMT2-204ENST00000553324 TIAM1Q13009 1591 aa24.1■■□□□ 1.45
SHMT2-204ENST00000553324 PLEKHH2Q8IVE3 1493 aa24.09■■□□□ 1.45
SHMT2-204ENST00000553324 ARHGEF40Q8TER5 1519 aa24.09■■□□□ 1.45
SHMT2-204ENST00000553324 YEATS2Q9ULM3 1422 aa24.09■■□□□ 1.45
SHMT2-204ENST00000553324 KIAA1107Q9UPP5 1409 aa24.09■■□□□ 1.45
SHMT2-204ENST00000553324 CDC42BPAQ5VT25 1732 aa24.08■■□□□ 1.45
SHMT2-204ENST00000553324 LRRC9Q6ZRR7 1453 aa24.07■■□□□ 1.44
SHMT2-204ENST00000553324 ABCC1P33527 1531 aa24.07■■□□□ 1.44
SHMT2-204ENST00000553324 HNRNPMP52272 730 aaKnown RBP eCLIP24.07■■□□□ 1.44
SHMT2-204ENST00000553324 ATP10AO60312 1499 aa24.07■■□□□ 1.44
SHMT2-204ENST00000553324 TRAPPC8Q9Y2L5 1435 aa24.06■■□□□ 1.44
SHMT2-204ENST00000553324 ARHGEF12Q9NZN5 1544 aa24.05■■□□□ 1.44
SHMT2-204ENST00000553324 NCOA2Q15596 1464 aa24.05■■□□□ 1.44
SHMT2-204ENST00000553324 MLH3Q9UHC1 1453 aa24.05■■□□□ 1.44
SHMT2-204ENST00000553324 KANK4Q5T7N3 995 aaPredicted RBP24.04■■□□□ 1.44
SHMT2-204ENST00000553324 KDM5CP41229 1560 aa24.03■■□□□ 1.44
SHMT2-204ENST00000553324 RSPH4AQ5TD94 716 aa24.02■■□□□ 1.44
SHMT2-204ENST00000553324 C9orf84Q5VXU9 1444 aa24.01■■□□□ 1.43
SHMT2-204ENST00000553324 SUPT6HQ7KZ85 1726 aaKnown RBP24.01■■□□□ 1.43
SHMT2-204ENST00000553324 SPAG9O60271 1321 aaKnown RBP24.01■■□□□ 1.43
SHMT2-204ENST00000553324 SAMD9LQ8IVG5 1584 aa23.99■■□□□ 1.43
SHMT2-204ENST00000553324 ZNF644Q9H582 1327 aaPredicted RBP23.99■■□□□ 1.43
SHMT2-204ENST00000553324 ITSN2Q9NZM3 1697 aa23.96■■□□□ 1.43
SHMT2-204ENST00000553324 HECW2Q9P2P5 1572 aa23.96■■□□□ 1.43
SHMT2-204ENST00000553324 SYCP2Q9BX26 1530 aa23.96■■□□□ 1.43
SHMT2-204ENST00000553324 MLECQ14165 292 aa23.94■■□□□ 1.42
SHMT2-204ENST00000553324 BCORL1Q5H9F3 1711 aa23.93■■□□□ 1.42
SHMT2-204ENST00000553324 ADAMTSL3P82987 1691 aa23.92■■□□□ 1.42
SHMT2-204ENST00000553324 MBD5Q9P267 1494 aa23.91■■□□□ 1.42
SHMT2-204ENST00000553324 PTPRMP28827 1452 aa23.89■■□□□ 1.42
SHMT2-204ENST00000553324 TSPY4P0CV99 314 aa23.89■■□□□ 1.41
SHMT2-204ENST00000553324 TSPY10P0CW01 314 aa23.89■■□□□ 1.41
SHMT2-204ENST00000553324 MIA2Q96PC5 1412 aa23.89■■□□□ 1.41
SHMT2-204ENST00000553324 REREQ9P2R6 1566 aa23.88■■□□□ 1.41
SHMT2-204ENST00000553324 DIP2CQ9Y2E4 1556 aa23.87■■□□□ 1.41
SHMT2-204ENST00000553324 RTEL1-TNFRSF6BF6WH68 1400 aa23.86■■□□□ 1.41
SHMT2-204ENST00000553324 MYOM3Q5VTT5 1437 aa23.86■■□□□ 1.41
SHMT2-204ENST00000553324 CAMSAP2Q08AD1 1489 aa23.86■■□□□ 1.41
SHMT2-204ENST00000553324 KIDINS220Q9ULH0 1771 aa23.85■■□□□ 1.41
SHMT2-204ENST00000553324 ESF1Q9H501 851 aaKnown RBP23.84■■□□□ 1.41
SHMT2-204ENST00000553324 AGLP35573 1532 aa23.84■■□□□ 1.41
SHMT2-204ENST00000553324 ABCA6Q8N139 1617 aa23.83■■□□□ 1.41
SHMT2-204ENST00000553324 ATP7AQ04656 1500 aa23.83■■□□□ 1.41
SHMT2-204ENST00000553324 CCDC141Q6ZP82 1450 aa23.82■■□□□ 1.4
SHMT2-204ENST00000553324 MADDQ8WXG6 1647 aa23.82■■□□□ 1.4
SHMT2-204ENST00000553324 SIGLEC1Q9BZZ2 1709 aa23.79■■□□□ 1.4
SHMT2-204ENST00000553324 A2MP01023 1474 aa23.79■■□□□ 1.4
SHMT2-204ENST00000553324 PPP6R1Q9UPN7 881 aa23.76■■□□□ 1.39
SHMT2-204ENST00000553324 ARHGEF5Q12774 1597 aa23.76■■□□□ 1.39
SHMT2-204ENST00000553324 INO80Q9ULG1 1556 aaPredicted RBP23.76■■□□□ 1.39
SHMT2-204ENST00000553324 DHX29Q7Z478 1369 aaKnown RBP23.75■■□□□ 1.39
SHMT2-204ENST00000553324 PLPPR3Q6T4P5 718 aa23.74■■□□□ 1.39
SHMT2-204ENST00000553324 RIMS1Q86UR5 1692 aaKnown RBP23.73■■□□□ 1.39
SHMT2-204ENST00000553324 CNTLNQ9NXG0 1405 aa23.71■■□□□ 1.39
SHMT2-204ENST00000553324 GGT6Q6P531 493 aa23.71■■□□□ 1.39
SHMT2-204ENST00000553324 FGD6Q6ZV73 1430 aa23.7■■□□□ 1.38
SHMT2-204ENST00000553324 FER1L4A9Z1Z3 1794 aa23.68■■□□□ 1.38
SHMT2-204ENST00000553324 CEBPAP49715 358 aaPredicted RBP23.68■■□□□ 1.38
SHMT2-204ENST00000553324 PLXNC1O60486 1568 aa23.68■■□□□ 1.38
SHMT2-204ENST00000553324 ADGBQ8N7X0 1667 aa23.67■■□□□ 1.38
SHMT2-204ENST00000553324 KIF3BO15066 747 aa23.66■■□□□ 1.38
SHMT2-204ENST00000553324 TCOF1Q13428 1488 aaKnown RBP23.64■■□□□ 1.38
SHMT2-204ENST00000553324 PTPN23Q9H3S7 1636 aa23.63■■□□□ 1.37
SHMT2-204ENST00000553324 ABCC5O15440 1437 aa23.62■■□□□ 1.37
SHMT2-204ENST00000553324 ZMYM3Q14202 1370 aa23.62■■□□□ 1.37
SHMT2-204ENST00000553324 MAST1Q9Y2H9 1570 aa23.61■■□□□ 1.37
SHMT2-204ENST00000553324 FAM50AQ14320 339 aaKnown RBP23.61■■□□□ 1.37
SHMT2-204ENST00000553324 SHANK2Q9UPX8 1470 aa23.58■■□□□ 1.37
SHMT2-204ENST00000553324 DAPK1P53355 1430 aa23.58■■□□□ 1.36
SHMT2-204ENST00000553324 LMTK3Q96Q04 1460 aa23.56■■□□□ 1.36
SHMT2-204ENST00000553324 RRP7BPQ9NSQ0 103 aa23.56■■□□□ 1.36
SHMT2-204ENST00000553324 WASHC2CQ9Y4E1 1318 aa23.56■■□□□ 1.36
SHMT2-204ENST00000553324 ANKRD30AQ9BXX3 1397 aa23.54■■□□□ 1.36
SHMT2-204ENST00000553324 KIF15Q9NS87 1388 aa23.53■■□□□ 1.36
SHMT2-204ENST00000553324 PPARGC1BQ86YN6 1023 aaKnown RBP23.53■■□□□ 1.36
SHMT2-204ENST00000553324 CHIC2Q9UKJ5 165 aa23.53■■□□□ 1.36
SHMT2-204ENST00000553324 SETD1BQ9UPS6 1966 aaKnown RBP23.52■■□□□ 1.36
SHMT2-204ENST00000553324 NPATQ14207 1427 aa23.52■■□□□ 1.36
SHMT2-204ENST00000553324 DUOX2Q9NRD8 1548 aa23.52■■□□□ 1.36
SHMT2-204ENST00000553324 UHRF1BP1Q6BDS2 1440 aa23.51■■□□□ 1.35
SHMT2-204ENST00000553324 DNMT1P26358 1616 aaKnown RBP23.51■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms