RNA–Protein interactions for RNA: ENST00000553256.5

PTCH1-227, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 537 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-227ENST00000553256 SCAPERQ9BY12 1400 aa30.93■■■□□ 2.54
PTCH1-227ENST00000553256 POGZQ7Z3K3 1410 aa30.92■■■□□ 2.54
PTCH1-227ENST00000553256 PREX2Q70Z35 1606 aa30.92■■■□□ 2.54
PTCH1-227ENST00000553256 ARHGAP5Q13017 1502 aa30.89■■■□□ 2.54
PTCH1-227ENST00000553256 GPATCH8Q9UKJ3 1502 aaKnown RBP30.88■■■□□ 2.53
PTCH1-227ENST00000553256 AEBP2Q6ZN18 517 aaPredicted RBP30.88■■■□□ 2.53
PTCH1-227ENST00000553256 CDC42BPAQ5VT25 1732 aa30.87■■■□□ 2.53
PTCH1-227ENST00000553256 ARHGEF40Q8TER5 1519 aa30.86■■■□□ 2.53
PTCH1-227ENST00000553256 ARHGEF12Q9NZN5 1544 aa30.85■■■□□ 2.53
PTCH1-227ENST00000553256 MAGI2Q86UL8 1455 aa30.84■■■□□ 2.53
PTCH1-227ENST00000553256 EHBP1L1Q8N3D4 1523 aa30.83■■■□□ 2.53
PTCH1-227ENST00000553256 YEATS2Q9ULM3 1422 aa30.82■■■□□ 2.52
PTCH1-227ENST00000553256 MTUS2Q5JR59 1369 aa30.82■■■□□ 2.52
PTCH1-227ENST00000553256 KDM5CP41229 1560 aa30.81■■■□□ 2.52
PTCH1-227ENST00000553256 ABCC1P33527 1531 aa30.81■■■□□ 2.52
PTCH1-227ENST00000553256 TIAM1Q13009 1591 aa30.8■■■□□ 2.52
PTCH1-227ENST00000553256 ZNF518AQ6AHZ1 1483 aa30.76■■■□□ 2.52
PTCH1-227ENST00000553256 ZFYVE16Q7Z3T8 1539 aa30.76■■■□□ 2.51
PTCH1-227ENST00000553256 TRAPPC8Q9Y2L5 1435 aa30.75■■■□□ 2.51
PTCH1-227ENST00000553256 MAP3K1Q13233 1512 aa30.75■■■□□ 2.51
PTCH1-227ENST00000553256 AFAP1Q8N556 730 aa30.75■■■□□ 2.51
PTCH1-227ENST00000553256 SAMD9LQ8IVG5 1584 aa30.75■■■□□ 2.51
PTCH1-227ENST00000553256 SIGLEC1Q9BZZ2 1709 aa30.74■■■□□ 2.51
PTCH1-227ENST00000553256 ITSN2Q9NZM3 1697 aa30.71■■■□□ 2.51
PTCH1-227ENST00000553256 CCNB3Q8WWL7 1395 aa30.7■■■□□ 2.51
PTCH1-227ENST00000553256 ADAMTSL3P82987 1691 aa30.7■■■□□ 2.5
PTCH1-227ENST00000553256 LRRC9Q6ZRR7 1453 aa30.7■■■□□ 2.5
PTCH1-227ENST00000553256 MLH3Q9UHC1 1453 aa30.69■■■□□ 2.5
PTCH1-227ENST00000553256 KIAA1107Q9UPP5 1409 aa30.68■■■□□ 2.5
PTCH1-227ENST00000553256 NCOA2Q15596 1464 aa30.68■■■□□ 2.5
PTCH1-227ENST00000553256 BCORL1Q5H9F3 1711 aa30.65■■■□□ 2.5
PTCH1-227ENST00000553256 ATP10AO60312 1499 aa30.64■■■□□ 2.5
PTCH1-227ENST00000553256 CFDP1Q9UEE9 299 aaPredicted RBP30.64■■■□□ 2.5
PTCH1-227ENST00000553256 HECW2Q9P2P5 1572 aa30.63■■■□□ 2.49
PTCH1-227ENST00000553256 KANK4Q5T7N3 995 aaPredicted RBP30.63■■■□□ 2.49
PTCH1-227ENST00000553256 SYCP2Q9BX26 1530 aa30.63■■■□□ 2.49
PTCH1-227ENST00000553256 SUPT6HQ7KZ85 1726 aaKnown RBP30.61■■■□□ 2.49
PTCH1-227ENST00000553256 DIP2CQ9Y2E4 1556 aa30.6■■■□□ 2.49
PTCH1-227ENST00000553256 PLEKHH2Q8IVE3 1493 aa30.59■■■□□ 2.49
PTCH1-227ENST00000553256 MBD5Q9P267 1494 aa30.59■■■□□ 2.49
PTCH1-227ENST00000553256 C9orf84Q5VXU9 1444 aa30.59■■■□□ 2.49
PTCH1-227ENST00000553256 ZNF644Q9H582 1327 aaPredicted RBP30.58■■■□□ 2.49
PTCH1-227ENST00000553256 ZNF777Q9ULD5 760 aaPredicted RBP30.58■■■□□ 2.49
PTCH1-227ENST00000553256 REREQ9P2R6 1566 aa30.58■■■□□ 2.49
PTCH1-227ENST00000553256 ABCA6Q8N139 1617 aa30.57■■■□□ 2.48
PTCH1-227ENST00000553256 KIDINS220Q9ULH0 1771 aa30.56■■■□□ 2.48
PTCH1-227ENST00000553256 HNRNPMP52272 730 aaKnown RBP eCLIP30.56■■■□□ 2.48
PTCH1-227ENST00000553256 MADDQ8WXG6 1647 aa30.53■■■□□ 2.48
PTCH1-227ENST00000553256 PTPRMP28827 1452 aa30.51■■■□□ 2.48
PTCH1-227ENST00000553256 ARID4BQ4LE39 1312 aaPredicted RBP30.51■■■□□ 2.48
PTCH1-227ENST00000553256 INO80Q9ULG1 1556 aaPredicted RBP30.48■■■□□ 2.47
PTCH1-227ENST00000553256 AGLP35573 1532 aa30.47■■■□□ 2.47
PTCH1-227ENST00000553256 CAMSAP2Q08AD1 1489 aa30.44■■■□□ 2.46
PTCH1-227ENST00000553256 SPAG9O60271 1321 aaKnown RBP30.44■■■□□ 2.46
PTCH1-227ENST00000553256 ATP7AQ04656 1500 aa30.42■■■□□ 2.46
PTCH1-227ENST00000553256 MYOM3Q5VTT5 1437 aa30.39■■■□□ 2.46
PTCH1-227ENST00000553256 MIA2Q96PC5 1412 aa30.39■■■□□ 2.45
PTCH1-227ENST00000553256 RTEL1-TNFRSF6BF6WH68 1400 aa30.38■■■□□ 2.45
PTCH1-227ENST00000553256 PLXNC1O60486 1568 aa30.37■■■□□ 2.45
PTCH1-227ENST00000553256 RIMS1Q86UR5 1692 aaKnown RBP30.37■■■□□ 2.45
PTCH1-227ENST00000553256 ARHGEF5Q12774 1597 aa30.36■■■□□ 2.45
PTCH1-227ENST00000553256 CCDC141Q6ZP82 1450 aa30.35■■■□□ 2.45
PTCH1-227ENST00000553256 MLECQ14165 292 aa30.34■■■□□ 2.45
PTCH1-227ENST00000553256 MYT1LQ9UL68 1186 aa30.33■■■□□ 2.45
PTCH1-227ENST00000553256 RSPH4AQ5TD94 716 aa30.32■■■□□ 2.44
PTCH1-227ENST00000553256 FER1L4A9Z1Z3 1794 aa30.31■■■□□ 2.44
PTCH1-227ENST00000553256 A2MP01023 1474 aa30.3■■■□□ 2.44
PTCH1-227ENST00000553256 APLP2Q06481 763 aa30.28■■■□□ 2.44
PTCH1-227ENST00000553256 ADGBQ8N7X0 1667 aa30.23■■■□□ 2.43
PTCH1-227ENST00000553256 MAST1Q9Y2H9 1570 aa30.22■■■□□ 2.43
PTCH1-227ENST00000553256 TCOF1Q13428 1488 aaKnown RBP30.21■■■□□ 2.43
PTCH1-227ENST00000553256 DHX29Q7Z478 1369 aaKnown RBP30.21■■■□□ 2.43
PTCH1-227ENST00000553256 FGD6Q6ZV73 1430 aa30.21■■■□□ 2.43
PTCH1-227ENST00000553256 LMTK3Q96Q04 1460 aa30.19■■■□□ 2.42
PTCH1-227ENST00000553256 PTPN23Q9H3S7 1636 aa30.17■■■□□ 2.42
PTCH1-227ENST00000553256 ABCC5O15440 1437 aa30.14■■■□□ 2.42
PTCH1-227ENST00000553256 CEBPAP49715 358 aaPredicted RBP30.14■■■□□ 2.42
PTCH1-227ENST00000553256 TSPY4P0CV99 314 aa30.12■■■□□ 2.41
PTCH1-227ENST00000553256 TSPY10P0CW01 314 aa30.12■■■□□ 2.41
PTCH1-227ENST00000553256 CNTLNQ9NXG0 1405 aa30.12■■■□□ 2.41
PTCH1-227ENST00000553256 C3P01024 1663 aa30.09■■■□□ 2.41
PTCH1-227ENST00000553256 SHANK2Q9UPX8 1470 aa30.09■■■□□ 2.41
PTCH1-227ENST00000553256 MROH2AA6NES4 1674 aa30.06■■■□□ 2.4
PTCH1-227ENST00000553256 DNMT1P26358 1616 aaKnown RBP30.06■■■□□ 2.4
PTCH1-227ENST00000553256 DAPK1P53355 1430 aa30.05■■■□□ 2.4
PTCH1-227ENST00000553256 PPP6R1Q9UPN7 881 aa30.05■■■□□ 2.4
PTCH1-227ENST00000553256 CROCC2H7BZ55 1655 aa30.04■■■□□ 2.4
PTCH1-227ENST00000553256 ZMYM3Q14202 1370 aa30.03■■■□□ 2.4
PTCH1-227ENST00000553256 PLPPR3Q6T4P5 718 aa30.02■■■□□ 2.4
PTCH1-227ENST00000553256 GGT6Q6P531 493 aa30.01■■■□□ 2.39
PTCH1-227ENST00000553256 CLTCQ00610 1675 aaKnown RBP29.98■■■□□ 2.39
PTCH1-227ENST00000553256 KIF3BO15066 747 aa29.98■■■□□ 2.39
PTCH1-227ENST00000553256 PREX1Q8TCU6 1659 aa29.97■■■□□ 2.39
PTCH1-227ENST00000553256 SETD1BQ9UPS6 1966 aaKnown RBP29.97■■■□□ 2.39
PTCH1-227ENST00000553256 FAM135AQ9P2D6 1515 aa29.96■■■□□ 2.39
PTCH1-227ENST00000553256 RNF17Q9BXT8 1623 aaKnown RBP29.96■■■□□ 2.39
PTCH1-227ENST00000553256 NPATQ14207 1427 aa29.96■■■□□ 2.39
PTCH1-227ENST00000553256 ESF1Q9H501 851 aaKnown RBP29.95■■■□□ 2.39
PTCH1-227ENST00000553256 DUOX2Q9NRD8 1548 aa29.95■■■□□ 2.38
PTCH1-227ENST00000553256 MROH1Q8NDA8 1641 aa29.94■■■□□ 2.38
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms