RNA–Protein interactions for RNA: ENST00000552874.1

NPAS3-213, Transcript of neuronal PAS domain protein 3, humanhuman

TSL 5

Gene NPAS3, Length 634 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3-213ENST00000552874 CD109Q6YHK3 1445 aa12.27□□□□□ -0.45
NPAS3-213ENST00000552874 TEX14Q8IWB6 1497 aa12.27□□□□□ -0.45
NPAS3-213ENST00000552874 KDM6BO15054 1643 aa12.26□□□□□ -0.45
NPAS3-213ENST00000552874 FAM69CQ0P6D2 419 aa12.26□□□□□ -0.45
NPAS3-213ENST00000552874 NCOA2Q15596 1464 aa12.26□□□□□ -0.45
NPAS3-213ENST00000552874 ABCC1P33527 1531 aa12.26□□□□□ -0.45
NPAS3-213ENST00000552874 NEO1Q92859 1461 aa12.25□□□□□ -0.45
NPAS3-213ENST00000552874 PLCH2O75038 1416 aa12.24□□□□□ -0.45
NPAS3-213ENST00000552874 GPATCH8Q9UKJ3 1502 aaKnown RBP12.24□□□□□ -0.45
NPAS3-213ENST00000552874 COL17A1Q9UMD9 1497 aaPredicted RBP12.24□□□□□ -0.45
NPAS3-213ENST00000552874 PLEKHD1A6NEE1 506 aa12.23□□□□□ -0.45
NPAS3-213ENST00000552874 FANCAO15360 1455 aa12.22□□□□□ -0.45
NPAS3-213ENST00000552874 MTUS2Q5JR59 1369 aa12.22□□□□□ -0.45
NPAS3-213ENST00000552874 CROCC2H7BZ55 1655 aa12.22□□□□□ -0.45
NPAS3-213ENST00000552874 KDM5CP41229 1560 aa12.22□□□□□ -0.45
NPAS3-213ENST00000552874 ZMYM4Q5VZL5 1548 aa12.21□□□□□ -0.45
NPAS3-213ENST00000552874 TRHP20396 242 aaPredicted RBP12.21□□□□□ -0.45
NPAS3-213ENST00000552874 ATP1B4Q9UN42 357 aaPredicted RBP12.21□□□□□ -0.45
NPAS3-213ENST00000552874 ARHGAP5Q13017 1502 aa12.21□□□□□ -0.46
NPAS3-213ENST00000552874 KANK4Q5T7N3 995 aaPredicted RBP12.2□□□□□ -0.46
NPAS3-213ENST00000552874 KCNH8Q96L42 1107 aa12.2□□□□□ -0.46
NPAS3-213ENST00000552874 ARHGEF12Q9NZN5 1544 aa12.2□□□□□ -0.46
NPAS3-213ENST00000552874 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.19□□□□□ -0.46
NPAS3-213ENST00000552874 HNRNPUL2Q1KMD3 747 aaKnown RBP12.19□□□□□ -0.46
NPAS3-213ENST00000552874 CDK11AQ9UQ88 783 aaPredicted RBP12.19□□□□□ -0.46
NPAS3-213ENST00000552874 SIGLEC1Q9BZZ2 1709 aa12.19□□□□□ -0.46
NPAS3-213ENST00000552874 SYCP2Q9BX26 1530 aa12.18□□□□□ -0.46
NPAS3-213ENST00000552874 INO80Q9ULG1 1556 aaPredicted RBP12.18□□□□□ -0.46
NPAS3-213ENST00000552874 ARHGEF40Q8TER5 1519 aa12.17□□□□□ -0.46
NPAS3-213ENST00000552874 PTPN23Q9H3S7 1636 aa12.17□□□□□ -0.46
NPAS3-213ENST00000552874 AKNAQ7Z591 1439 aa12.17□□□□□ -0.46
NPAS3-213ENST00000552874 PHLDB1Q86UU1 1377 aa12.17□□□□□ -0.46
NPAS3-213ENST00000552874 ADGRL1O94910 1474 aa12.16□□□□□ -0.46
NPAS3-213ENST00000552874 KIDINS220Q9ULH0 1771 aa12.16□□□□□ -0.46
NPAS3-213ENST00000552874 CNKSR2Q8WXI2 1034 aa12.16□□□□□ -0.46
NPAS3-213ENST00000552874 MYOM3Q5VTT5 1437 aa12.16□□□□□ -0.46
NPAS3-213ENST00000552874 POGZQ7Z3K3 1410 aa12.16□□□□□ -0.46
NPAS3-213ENST00000552874 ARHGEF5Q12774 1597 aa12.16□□□□□ -0.46
NPAS3-213ENST00000552874 CAMSAP2Q08AD1 1489 aa12.15□□□□□ -0.46
NPAS3-213ENST00000552874 TCOF1Q13428 1488 aaKnown RBP12.15□□□□□ -0.46
NPAS3-213ENST00000552874 HECW2Q9P2P5 1572 aa12.15□□□□□ -0.46
NPAS3-213ENST00000552874 HOXD11P31277 338 aaPredicted RBP12.15□□□□□ -0.46
NPAS3-213ENST00000552874 ABCA6Q8N139 1617 aa12.15□□□□□ -0.47
NPAS3-213ENST00000552874 ADGBQ8N7X0 1667 aa12.14□□□□□ -0.47
NPAS3-213ENST00000552874 ZFYVE16Q7Z3T8 1539 aa12.13□□□□□ -0.47
NPAS3-213ENST00000552874 DNMT1P26358 1616 aaKnown RBP12.13□□□□□ -0.47
NPAS3-213ENST00000552874 CCNB3Q8WWL7 1395 aa12.13□□□□□ -0.47
NPAS3-213ENST00000552874 MBD5Q9P267 1494 aa12.13□□□□□ -0.47
NPAS3-213ENST00000552874 MAST1Q9Y2H9 1570 aa12.12□□□□□ -0.47
NPAS3-213ENST00000552874 FGD6Q6ZV73 1430 aa12.11□□□□□ -0.47
NPAS3-213ENST00000552874 MIA2Q96PC5 1412 aa12.11□□□□□ -0.47
NPAS3-213ENST00000552874 DIP2CQ9Y2E4 1556 aa12.11□□□□□ -0.47
NPAS3-213ENST00000552874 KIAA1107Q9UPP5 1409 aa12.11□□□□□ -0.47
NPAS3-213ENST00000552874 DENND4BO75064 1496 aaPredicted RBP12.1□□□□□ -0.47
NPAS3-213ENST00000552874 ZNF518AQ6AHZ1 1483 aa12.1□□□□□ -0.47
NPAS3-213ENST00000552874 PLEKHH2Q8IVE3 1493 aa12.1□□□□□ -0.47
NPAS3-213ENST00000552874 TRAPPC8Q9Y2L5 1435 aa12.1□□□□□ -0.47
NPAS3-213ENST00000552874 REREQ9P2R6 1566 aa12.09□□□□□ -0.47
NPAS3-213ENST00000552874 SCAPERQ9BY12 1400 aa12.09□□□□□ -0.47
NPAS3-213ENST00000552874 PLXNC1O60486 1568 aa12.09□□□□□ -0.47
NPAS3-213ENST00000552874 BCORL1Q5H9F3 1711 aa12.08□□□□□ -0.48
NPAS3-213ENST00000552874 ATP7AQ04656 1500 aa12.07□□□□□ -0.48
NPAS3-213ENST00000552874 CCDC141Q6ZP82 1450 aa12.07□□□□□ -0.48
NPAS3-213ENST00000552874 MLH3Q9UHC1 1453 aa12.07□□□□□ -0.48
NPAS3-213ENST00000552874 EFCAB2Q5VUJ9 269 aa12.06□□□□□ -0.48
NPAS3-213ENST00000552874 MAGI2Q86UL8 1455 aa12.06□□□□□ -0.48
NPAS3-213ENST00000552874 SHANK2Q9UPX8 1470 aa12.06□□□□□ -0.48
NPAS3-213ENST00000552874 RRBP1Q9P2E9 1410 aaKnown RBP12.05□□□□□ -0.48
NPAS3-213ENST00000552874 YEATS2Q9ULM3 1422 aa12.05□□□□□ -0.48
NPAS3-213ENST00000552874 RNF216Q9NWF9 866 aaPredicted RBP12.05□□□□□ -0.48
NPAS3-213ENST00000552874 ZNF644Q9H582 1327 aaPredicted RBP12.04□□□□□ -0.48
NPAS3-213ENST00000552874 CFDP1Q9UEE9 299 aaPredicted RBP12.02□□□□□ -0.49
NPAS3-213ENST00000552874 RAPGEF3O95398 923 aa12.01□□□□□ -0.49
NPAS3-213ENST00000552874 APLP2Q06481 763 aa12.01□□□□□ -0.49
NPAS3-213ENST00000552874 ABCC5O15440 1437 aa12.01□□□□□ -0.49
NPAS3-213ENST00000552874 DAPK1P53355 1430 aa12.01□□□□□ -0.49
NPAS3-213ENST00000552874 ADAMTSL3P82987 1691 aa12□□□□□ -0.49
NPAS3-213ENST00000552874 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12□□□□□ -0.49
NPAS3-213ENST00000552874 ADGRL2O95490 1459 aa12□□□□□ -0.49
NPAS3-213ENST00000552874 EIF2AK4Q9P2K8 1649 aaKnown RBP12□□□□□ -0.49
NPAS3-213ENST00000552874 GCC2Q8IWJ2 1684 aa12□□□□□ -0.49
NPAS3-213ENST00000552874 RTEL1-TNFRSF6BF6WH68 1400 aa11.99□□□□□ -0.49
NPAS3-213ENST00000552874 MROH1Q8NDA8 1641 aa11.99□□□□□ -0.49
NPAS3-213ENST00000552874 RNF17Q9BXT8 1623 aaKnown RBP11.99□□□□□ -0.49
NPAS3-213ENST00000552874 DEPDC5O75140 1603 aa11.98□□□□□ -0.49
NPAS3-213ENST00000552874 AGLP35573 1532 aa11.98□□□□□ -0.49
NPAS3-213ENST00000552874 PTPRKQ15262 1439 aa11.98□□□□□ -0.49
NPAS3-213ENST00000552874 FER1L4A9Z1Z3 1794 aa11.97□□□□□ -0.49
NPAS3-213ENST00000552874 C9orf84Q5VXU9 1444 aa11.97□□□□□ -0.49
NPAS3-213ENST00000552874 DCAF8L1A6NGE4 600 aa11.97□□□□□ -0.49
NPAS3-213ENST00000552874 AFAP1Q8N556 730 aa11.96□□□□□ -0.49
NPAS3-213ENST00000552874 ATP10AO60312 1499 aa11.95□□□□□ -0.5
NPAS3-213ENST00000552874 HNRNPMP52272 730 aaKnown RBP eCLIP11.95□□□□□ -0.5
NPAS3-213ENST00000552874 PPARGC1BQ86YN6 1023 aaKnown RBP11.95□□□□□ -0.5
NPAS3-213ENST00000552874 MADDQ8WXG6 1647 aa11.94□□□□□ -0.5
NPAS3-213ENST00000552874 ZNF777Q9ULD5 760 aaPredicted RBP11.94□□□□□ -0.5
NPAS3-213ENST00000552874 MROH2AA6NES4 1674 aa11.93□□□□□ -0.5
NPAS3-213ENST00000552874 A2MP01023 1474 aa11.92□□□□□ -0.5
NPAS3-213ENST00000552874 PRDM15P57071 1507 aaPredicted RBP11.91□□□□□ -0.5
NPAS3-213ENST00000552874 DUOX2Q9NRD8 1548 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms