RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 CCNB3Q8WWL7 1395 aa14.77□□□□□ -0.04
LIMA1-211ENST00000552338 TCOF1Q13428 1488 aaKnown RBP14.76□□□□□ -0.05
LIMA1-211ENST00000552338 PLPPR3Q6T4P5 718 aa14.76□□□□□ -0.05
LIMA1-211ENST00000552338 FGD6Q6ZV73 1430 aa14.75□□□□□ -0.05
LIMA1-211ENST00000552338 KCNH8Q96L42 1107 aa14.75□□□□□ -0.05
LIMA1-211ENST00000552338 PPARGC1BQ86YN6 1023 aaKnown RBP14.74□□□□□ -0.05
LIMA1-211ENST00000552338 CD109Q6YHK3 1445 aa14.73□□□□□ -0.05
LIMA1-211ENST00000552338 PTPN23Q9H3S7 1636 aa14.72□□□□□ -0.05
LIMA1-211ENST00000552338 PPRC1Q5VV67 1664 aaKnown RBP14.71□□□□□ -0.05
LIMA1-211ENST00000552338 CFAP74Q9C0B2 1584 aa14.71□□□□□ -0.05
LIMA1-211ENST00000552338 KIAA1107Q9UPP5 1409 aa14.7□□□□□ -0.06
LIMA1-211ENST00000552338 NEO1Q92859 1461 aa14.69□□□□□ -0.06
LIMA1-211ENST00000552338 FAM69CQ0P6D2 419 aa14.69□□□□□ -0.06
LIMA1-211ENST00000552338 CFDP1Q9UEE9 299 aaPredicted RBP14.69□□□□□ -0.06
LIMA1-211ENST00000552338 PLEKHH2Q8IVE3 1493 aa14.69□□□□□ -0.06
LIMA1-211ENST00000552338 SAMD9LQ8IVG5 1584 aa14.68□□□□□ -0.06
LIMA1-211ENST00000552338 EFCAB2Q5VUJ9 269 aa14.68□□□□□ -0.06
LIMA1-211ENST00000552338 ARHGAP5Q13017 1502 aa14.67□□□□□ -0.06
LIMA1-211ENST00000552338 TRIM26Q12899 539 aaPredicted RBP14.67□□□□□ -0.06
LIMA1-211ENST00000552338 RSPH4AQ5TD94 716 aa14.67□□□□□ -0.06
LIMA1-211ENST00000552338 FANCAO15360 1455 aa14.67□□□□□ -0.06
LIMA1-211ENST00000552338 ARHGEF5Q12774 1597 aa14.67□□□□□ -0.06
LIMA1-211ENST00000552338 CAMSAP2Q08AD1 1489 aa14.66□□□□□ -0.06
LIMA1-211ENST00000552338 MBD5Q9P267 1494 aa14.66□□□□□ -0.06
LIMA1-211ENST00000552338 TEX14Q8IWB6 1497 aa14.65□□□□□ -0.06
LIMA1-211ENST00000552338 ABCC1P33527 1531 aa14.65□□□□□ -0.06
LIMA1-211ENST00000552338 DNMT1P26358 1616 aaKnown RBP14.64□□□□□ -0.07
LIMA1-211ENST00000552338 AKNAQ7Z591 1439 aa14.64□□□□□ -0.07
LIMA1-211ENST00000552338 TSPOAP1O95153 1857 aa14.62□□□□□ -0.07
LIMA1-211ENST00000552338 ARHGEF12Q9NZN5 1544 aa14.61□□□□□ -0.07
LIMA1-211ENST00000552338 ZNF644Q9H582 1327 aaPredicted RBP14.61□□□□□ -0.07
LIMA1-211ENST00000552338 CROCC2H7BZ55 1655 aa14.6□□□□□ -0.07
LIMA1-211ENST00000552338 MAST1Q9Y2H9 1570 aa14.6□□□□□ -0.07
LIMA1-211ENST00000552338 ABCC5O15440 1437 aa14.59□□□□□ -0.07
LIMA1-211ENST00000552338 SHANK2Q9UPX8 1470 aa14.59□□□□□ -0.07
LIMA1-211ENST00000552338 DAPK1P53355 1430 aa14.58□□□□□ -0.07
LIMA1-211ENST00000552338 ADGRL1O94910 1474 aa14.58□□□□□ -0.08
LIMA1-211ENST00000552338 SYCP2Q9BX26 1530 aa14.58□□□□□ -0.08
LIMA1-211ENST00000552338 CCDC141Q6ZP82 1450 aa14.57□□□□□ -0.08
LIMA1-211ENST00000552338 KDM5CP41229 1560 aa14.57□□□□□ -0.08
LIMA1-211ENST00000552338 RICTORQ6R327 1708 aa14.57□□□□□ -0.08
LIMA1-211ENST00000552338 RTEL1-TNFRSF6BF6WH68 1400 aa14.57□□□□□ -0.08
LIMA1-211ENST00000552338 SCAPERQ9BY12 1400 aa14.57□□□□□ -0.08
LIMA1-211ENST00000552338 ADGRL2O95490 1459 aa14.57□□□□□ -0.08
LIMA1-211ENST00000552338 ROCK1Q13464 1354 aa14.56□□□□□ -0.08
LIMA1-211ENST00000552338 PTPRKQ15262 1439 aa14.56□□□□□ -0.08
LIMA1-211ENST00000552338 FAM50AQ14320 339 aaKnown RBP14.55□□□□□ -0.08
LIMA1-211ENST00000552338 ZNF777Q9ULD5 760 aaPredicted RBP14.55□□□□□ -0.08
LIMA1-211ENST00000552338 ZNF518AQ6AHZ1 1483 aa14.55□□□□□ -0.08
LIMA1-211ENST00000552338 HNRNPMP52272 730 aaKnown RBP eCLIP14.54□□□□□ -0.08
LIMA1-211ENST00000552338 POGZQ7Z3K3 1410 aa14.54□□□□□ -0.08
LIMA1-211ENST00000552338 TRAPPC8Q9Y2L5 1435 aa14.54□□□□□ -0.08
LIMA1-211ENST00000552338 DENND4BO75064 1496 aaPredicted RBP14.54□□□□□ -0.08
LIMA1-211ENST00000552338 ADGBQ8N7X0 1667 aa14.53□□□□□ -0.08
LIMA1-211ENST00000552338 MLH3Q9UHC1 1453 aa14.53□□□□□ -0.08
LIMA1-211ENST00000552338 ZMYM4Q5VZL5 1548 aa14.52□□□□□ -0.08
LIMA1-211ENST00000552338 PLXNC1O60486 1568 aa14.51□□□□□ -0.09
LIMA1-211ENST00000552338 FRMPD1Q5SYB0 1578 aa14.51□□□□□ -0.09
LIMA1-211ENST00000552338 TRHP20396 242 aaPredicted RBP14.51□□□□□ -0.09
LIMA1-211ENST00000552338 INO80Q9ULG1 1556 aaPredicted RBP14.51□□□□□ -0.09
LIMA1-211ENST00000552338 MAGI2Q86UL8 1455 aa14.5□□□□□ -0.09
LIMA1-211ENST00000552338 NCOA1Q15788 1441 aa14.5□□□□□ -0.09
LIMA1-211ENST00000552338 TSPY4P0CV99 314 aa14.5□□□□□ -0.09
LIMA1-211ENST00000552338 TSPY10P0CW01 314 aa14.5□□□□□ -0.09
LIMA1-211ENST00000552338 COL17A1Q9UMD9 1497 aaPredicted RBP14.5□□□□□ -0.09
LIMA1-211ENST00000552338 KIDINS220Q9ULH0 1771 aa14.5□□□□□ -0.09
LIMA1-211ENST00000552338 HRCP23327 699 aa14.49□□□□□ -0.09
LIMA1-211ENST00000552338 HFM1A2PYH4 1435 aa14.49□□□□□ -0.09
LIMA1-211ENST00000552338 C9orf84Q5VXU9 1444 aa14.49□□□□□ -0.09
LIMA1-211ENST00000552338 ZFYVE16Q7Z3T8 1539 aa14.48□□□□□ -0.09
LIMA1-211ENST00000552338 MSH5O43196 834 aa14.48□□□□□ -0.09
LIMA1-211ENST00000552338 AFAP1Q8N556 730 aa14.48□□□□□ -0.09
LIMA1-211ENST00000552338 GCC2Q8IWJ2 1684 aa14.48□□□□□ -0.09
LIMA1-211ENST00000552338 HECW2Q9P2P5 1572 aa14.47□□□□□ -0.09
LIMA1-211ENST00000552338 ANKRD30AQ9BXX3 1397 aa14.47□□□□□ -0.09
LIMA1-211ENST00000552338 ATP7AQ04656 1500 aa14.46□□□□□ -0.09
LIMA1-211ENST00000552338 ACIN1Q9UKV3 1341 aaKnown RBP14.45□□□□□ -0.1
LIMA1-211ENST00000552338 NAIPQ13075 1403 aa14.45□□□□□ -0.1
LIMA1-211ENST00000552338 SPAG9O60271 1321 aaKnown RBP14.44□□□□□ -0.1
LIMA1-211ENST00000552338 REREQ9P2R6 1566 aa14.43□□□□□ -0.1
LIMA1-211ENST00000552338 RAPGEF3O95398 923 aa14.43□□□□□ -0.1
LIMA1-211ENST00000552338 PCGF6Q9BYE7 350 aa14.43□□□□□ -0.1
LIMA1-211ENST00000552338 KDM6BO15054 1643 aa14.43□□□□□ -0.1
LIMA1-211ENST00000552338 BCORL1Q5H9F3 1711 aa14.43□□□□□ -0.1
LIMA1-211ENST00000552338 DUOX2Q9NRD8 1548 aa14.42□□□□□ -0.1
LIMA1-211ENST00000552338 SETD5Q9C0A6 1442 aa14.41□□□□□ -0.1
LIMA1-211ENST00000552338 DIP2CQ9Y2E4 1556 aa14.4□□□□□ -0.1
LIMA1-211ENST00000552338 ABCA6Q8N139 1617 aa14.4□□□□□ -0.1
LIMA1-211ENST00000552338 EIF2AK4Q9P2K8 1649 aaKnown RBP14.4□□□□□ -0.1
LIMA1-211ENST00000552338 ERBINQ96RT1 1412 aa14.4□□□□□ -0.1
LIMA1-211ENST00000552338 DHX29Q7Z478 1369 aaKnown RBP14.39□□□□□ -0.11
LIMA1-211ENST00000552338 KIF15Q9NS87 1388 aa14.39□□□□□ -0.11
LIMA1-211ENST00000552338 ITGAEP38570 1179 aa14.39□□□□□ -0.11
LIMA1-211ENST00000552338 CHIC2Q9UKJ5 165 aa14.39□□□□□ -0.11
LIMA1-211ENST00000552338 PIAS4Q8N2W9 510 aaPredicted RBP14.38□□□□□ -0.11
LIMA1-211ENST00000552338 ANKRD50Q9ULJ7 1429 aa14.38□□□□□ -0.11
LIMA1-211ENST00000552338 ARHGEF40Q8TER5 1519 aa14.37□□□□□ -0.11
LIMA1-211ENST00000552338 ATP10AO60312 1499 aa14.37□□□□□ -0.11
LIMA1-211ENST00000552338 AGLP35573 1532 aa14.36□□□□□ -0.11
LIMA1-211ENST00000552338 RRP7BPQ9NSQ0 103 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms