RNA–Protein interactions for RNA: ENST00000551111.1

PRPF40B-212, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 5

Gene PRPF40B, Length 1,061 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-212ENST00000551111 SCAPERQ9BY12 1400 aa19.09■□□□□ 0.65
PRPF40B-212ENST00000551111 ZFYVE16Q7Z3T8 1539 aa19.08■□□□□ 0.64
PRPF40B-212ENST00000551111 POGZQ7Z3K3 1410 aa19.06■□□□□ 0.64
PRPF40B-212ENST00000551111 CDC42BPBQ9Y5S2 1711 aa19.05■□□□□ 0.64
PRPF40B-212ENST00000551111 TROQ12816 1431 aaPredicted RBP19.04■□□□□ 0.64
PRPF40B-212ENST00000551111 PLPPR3Q6T4P5 718 aa19.04■□□□□ 0.64
PRPF40B-212ENST00000551111 PCF11O94913 1555 aaKnown RBP19.03■□□□□ 0.64
PRPF40B-212ENST00000551111 LMTK3Q96Q04 1460 aa19.03■□□□□ 0.64
PRPF40B-212ENST00000551111 FER1L4A9Z1Z3 1794 aa19.02■□□□□ 0.64
PRPF40B-212ENST00000551111 MLECQ14165 292 aa19.02■□□□□ 0.64
PRPF40B-212ENST00000551111 EFCAB2Q5VUJ9 269 aa19.01■□□□□ 0.63
PRPF40B-212ENST00000551111 MAGI2Q86UL8 1455 aa19.01■□□□□ 0.63
PRPF40B-212ENST00000551111 CDK11AQ9UQ88 783 aaPredicted RBP19■□□□□ 0.63
PRPF40B-212ENST00000551111 ARHGAP5Q13017 1502 aa19■□□□□ 0.63
PRPF40B-212ENST00000551111 AFAP1Q8N556 730 aa18.98■□□□□ 0.63
PRPF40B-212ENST00000551111 CDC42BPAQ5VT25 1732 aa18.97■□□□□ 0.63
PRPF40B-212ENST00000551111 ATP10AO60312 1499 aa18.97■□□□□ 0.63
PRPF40B-212ENST00000551111 HSPA2P54652 639 aa18.96■□□□□ 0.63
PRPF40B-212ENST00000551111 CASKIN1Q8WXD9 1431 aa18.96■□□□□ 0.63
PRPF40B-212ENST00000551111 PREX2Q70Z35 1606 aa18.95■□□□□ 0.62
PRPF40B-212ENST00000551111 ARHGEF12Q9NZN5 1544 aa18.95■□□□□ 0.62
PRPF40B-212ENST00000551111 KDM5CP41229 1560 aa18.94■□□□□ 0.62
PRPF40B-212ENST00000551111 CLIP1P30622 1438 aa18.94■□□□□ 0.62
PRPF40B-212ENST00000551111 C9orf84Q5VXU9 1444 aa18.92■□□□□ 0.62
PRPF40B-212ENST00000551111 ZNF518AQ6AHZ1 1483 aa18.92■□□□□ 0.62
PRPF40B-212ENST00000551111 ITSN2Q9NZM3 1697 aa18.92■□□□□ 0.62
PRPF40B-212ENST00000551111 DIP2CQ9Y2E4 1556 aa18.91■□□□□ 0.62
PRPF40B-212ENST00000551111 ABCA6Q8N139 1617 aa18.91■□□□□ 0.62
PRPF40B-212ENST00000551111 TRAPPC8Q9Y2L5 1435 aa18.91■□□□□ 0.62
PRPF40B-212ENST00000551111 CCDC18Q5T9S5 1454 aa18.9■□□□□ 0.62
PRPF40B-212ENST00000551111 CEBPAP49715 358 aaPredicted RBP18.9■□□□□ 0.62
PRPF40B-212ENST00000551111 ABCC1P33527 1531 aa18.89■□□□□ 0.61
PRPF40B-212ENST00000551111 FYCO1Q9BQS8 1478 aa18.87■□□□□ 0.61
PRPF40B-212ENST00000551111 KIDINS220Q9ULH0 1771 aa18.87■□□□□ 0.61
PRPF40B-212ENST00000551111 MYT1LQ9UL68 1186 aa18.86■□□□□ 0.61
PRPF40B-212ENST00000551111 SAMD9LQ8IVG5 1584 aa18.84■□□□□ 0.61
PRPF40B-212ENST00000551111 MLH3Q9UHC1 1453 aa18.84■□□□□ 0.61
PRPF40B-212ENST00000551111 PREX1Q8TCU6 1659 aa18.83■□□□□ 0.61
PRPF40B-212ENST00000551111 SETD1BQ9UPS6 1966 aaKnown RBP18.82■□□□□ 0.6
PRPF40B-212ENST00000551111 REREQ9P2R6 1566 aa18.82■□□□□ 0.6
PRPF40B-212ENST00000551111 FBXO41Q8TF61 875 aa18.81■□□□□ 0.6
PRPF40B-212ENST00000551111 C3P01024 1663 aa18.81■□□□□ 0.6
PRPF40B-212ENST00000551111 GPATCH8Q9UKJ3 1502 aaKnown RBP18.8■□□□□ 0.6
PRPF40B-212ENST00000551111 ZNF777Q9ULD5 760 aaPredicted RBP18.8■□□□□ 0.6
PRPF40B-212ENST00000551111 STRCQ7RTU9 1775 aa18.79■□□□□ 0.6
PRPF40B-212ENST00000551111 SYCP2Q9BX26 1530 aa18.78■□□□□ 0.6
PRPF40B-212ENST00000551111 HNRNPMP52272 730 aaKnown RBP eCLIP18.77■□□□□ 0.6
PRPF40B-212ENST00000551111 SUPT6HQ7KZ85 1726 aaKnown RBP18.76■□□□□ 0.59
PRPF40B-212ENST00000551111 AGLP35573 1532 aa18.75■□□□□ 0.59
PRPF40B-212ENST00000551111 ZNF644Q9H582 1327 aaPredicted RBP18.7■□□□□ 0.58
PRPF40B-212ENST00000551111 TIAM1Q13009 1591 aa18.69■□□□□ 0.58
PRPF40B-212ENST00000551111 CFDP1Q9UEE9 299 aaPredicted RBP18.69■□□□□ 0.58
PRPF40B-212ENST00000551111 SPAG9O60271 1321 aaKnown RBP18.69■□□□□ 0.58
PRPF40B-212ENST00000551111 ATP7AQ04656 1500 aa18.69■□□□□ 0.58
PRPF40B-212ENST00000551111 MTUS2Q5JR59 1369 aa18.68■□□□□ 0.58
PRPF40B-212ENST00000551111 CCNB3Q8WWL7 1395 aa18.68■□□□□ 0.58
PRPF40B-212ENST00000551111 INO80Q9ULG1 1556 aaPredicted RBP18.68■□□□□ 0.58
PRPF40B-212ENST00000551111 CEP162Q5TB80 1403 aa18.67■□□□□ 0.58
PRPF40B-212ENST00000551111 UHRF1BP1Q6BDS2 1440 aa18.67■□□□□ 0.58
PRPF40B-212ENST00000551111 CERKQ8TCT0 537 aa18.66■□□□□ 0.58
PRPF40B-212ENST00000551111 CLTCQ00610 1675 aaKnown RBP18.66■□□□□ 0.58
PRPF40B-212ENST00000551111 KIAA1107Q9UPP5 1409 aa18.66■□□□□ 0.58
PRPF40B-212ENST00000551111 PLXNC1O60486 1568 aa18.64■□□□□ 0.58
PRPF40B-212ENST00000551111 ESF1Q9H501 851 aaKnown RBP18.64■□□□□ 0.57
PRPF40B-212ENST00000551111 MROH2AA6NES4 1674 aa18.63■□□□□ 0.57
PRPF40B-212ENST00000551111 EHBP1L1Q8N3D4 1523 aa18.63■□□□□ 0.57
PRPF40B-212ENST00000551111 PLEKHH2Q8IVE3 1493 aa18.62■□□□□ 0.57
PRPF40B-212ENST00000551111 MBD5Q9P267 1494 aa18.62■□□□□ 0.57
PRPF40B-212ENST00000551111 A2MP01023 1474 aa18.61■□□□□ 0.57
PRPF40B-212ENST00000551111 ADGBQ8N7X0 1667 aa18.6■□□□□ 0.57
PRPF40B-212ENST00000551111 ZMYM3Q14202 1370 aa18.6■□□□□ 0.57
PRPF40B-212ENST00000551111 LOC105371045A0A1W2PR82 267 aa18.6■□□□□ 0.57
PRPF40B-212ENST00000551111 CNTLNQ9NXG0 1405 aa18.59■□□□□ 0.57
PRPF40B-212ENST00000551111 GGT6Q6P531 493 aa18.57■□□□□ 0.56
PRPF40B-212ENST00000551111 NCOA2Q15596 1464 aa18.55■□□□□ 0.56
PRPF40B-212ENST00000551111 CAMSAP1Q5T5Y3 1602 aa18.55■□□□□ 0.56
PRPF40B-212ENST00000551111 DMRT2Q9Y5R5 561 aa18.54■□□□□ 0.56
PRPF40B-212ENST00000551111 NCOA1Q15788 1441 aa18.54■□□□□ 0.56
PRPF40B-212ENST00000551111 PTPRTO14522 1441 aa18.53■□□□□ 0.56
PRPF40B-212ENST00000551111 NPATQ14207 1427 aa18.53■□□□□ 0.56
PRPF40B-212ENST00000551111 MYO3AQ8NEV4 1616 aa18.52■□□□□ 0.56
PRPF40B-212ENST00000551111 PTPRKQ15262 1439 aa18.52■□□□□ 0.56
PRPF40B-212ENST00000551111 CAMSAP2Q08AD1 1489 aa18.52■□□□□ 0.55
PRPF40B-212ENST00000551111 LTBP4Q8N2S1 1624 aa18.51■□□□□ 0.55
PRPF40B-212ENST00000551111 ZNF142P52746 1687 aaPredicted RBP18.5■□□□□ 0.55
PRPF40B-212ENST00000551111 NCKAP5LQ9HCH0 1330 aa18.49■□□□□ 0.55
PRPF40B-212ENST00000551111 RTEL1-TNFRSF6BF6WH68 1400 aa18.49■□□□□ 0.55
PRPF40B-212ENST00000551111 DHX29Q7Z478 1369 aaKnown RBP18.48■□□□□ 0.55
PRPF40B-212ENST00000551111 CEP170BQ9Y4F5 1589 aaPredicted RBP18.47■□□□□ 0.55
PRPF40B-212ENST00000551111 CCDC141Q6ZP82 1450 aa18.47■□□□□ 0.55
PRPF40B-212ENST00000551111 KANK4Q5T7N3 995 aaPredicted RBP18.46■□□□□ 0.55
PRPF40B-212ENST00000551111 VPS8Q8N3P4 1428 aa18.46■□□□□ 0.55
PRPF40B-212ENST00000551111 LRRC9Q6ZRR7 1453 aa18.46■□□□□ 0.54
PRPF40B-212ENST00000551111 KIF3BO15066 747 aa18.45■□□□□ 0.54
PRPF40B-212ENST00000551111 FBXO31Q5XUX0 539 aaPredicted RBP18.44■□□□□ 0.54
PRPF40B-212ENST00000551111 ARHGEF5Q12774 1597 aa18.43■□□□□ 0.54
PRPF40B-212ENST00000551111 CFAP65Q6ZU64 1925 aaKnown RBP18.43■□□□□ 0.54
PRPF40B-212ENST00000551111 DNMT1P26358 1616 aaKnown RBP18.42■□□□□ 0.54
PRPF40B-212ENST00000551111 PPP6R1Q9UPN7 881 aa18.41■□□□□ 0.54
PRPF40B-212ENST00000551111 ZNF335Q9H4Z2 1342 aaPredicted RBP18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms