RNA–Protein interactions for RNA: ENST00000550914.6

PTCH1-221, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-221ENST00000550914 YEATS2Q9ULM3 1422 aa21.21■□□□□ 0.99
PTCH1-221ENST00000550914 KIF14Q15058 1648 aa21.2■□□□□ 0.98
PTCH1-221ENST00000550914 SIGLEC1Q9BZZ2 1709 aa21.2■□□□□ 0.98
PTCH1-221ENST00000550914 EFCAB2Q5VUJ9 269 aa21.19■□□□□ 0.98
PTCH1-221ENST00000550914 EHMT2Q96KQ7 1210 aa21.19■□□□□ 0.98
PTCH1-221ENST00000550914 ATP1B4Q9UN42 357 aaPredicted RBP21.19■□□□□ 0.98
PTCH1-221ENST00000550914 TROQ12816 1431 aaPredicted RBP21.19■□□□□ 0.98
PTCH1-221ENST00000550914 LMTK3Q96Q04 1460 aa21.18■□□□□ 0.98
PTCH1-221ENST00000550914 LRRIQ1Q96JM4 1722 aa21.18■□□□□ 0.98
PTCH1-221ENST00000550914 CLIP1P30622 1438 aa21.16■□□□□ 0.98
PTCH1-221ENST00000550914 FER1L4A9Z1Z3 1794 aa21.15■□□□□ 0.98
PTCH1-221ENST00000550914 ATP10AO60312 1499 aa21.13■□□□□ 0.97
PTCH1-221ENST00000550914 ZNF518AQ6AHZ1 1483 aa21.13■□□□□ 0.97
PTCH1-221ENST00000550914 C9orf84Q5VXU9 1444 aa21.12■□□□□ 0.97
PTCH1-221ENST00000550914 KDM5CP41229 1560 aa21.11■□□□□ 0.97
PTCH1-221ENST00000550914 ARHGAP5Q13017 1502 aa21.11■□□□□ 0.97
PTCH1-221ENST00000550914 CCDC18Q5T9S5 1454 aa21.11■□□□□ 0.97
PTCH1-221ENST00000550914 CASKIN1Q8WXD9 1431 aa21.1■□□□□ 0.97
PTCH1-221ENST00000550914 ARHGEF12Q9NZN5 1544 aa21.09■□□□□ 0.97
PTCH1-221ENST00000550914 CDC42BPBQ9Y5S2 1711 aa21.09■□□□□ 0.97
PTCH1-221ENST00000550914 FBXO41Q8TF61 875 aa21.06■□□□□ 0.96
PTCH1-221ENST00000550914 PREX2Q70Z35 1606 aa21.06■□□□□ 0.96
PTCH1-221ENST00000550914 MLECQ14165 292 aa21.04■□□□□ 0.96
PTCH1-221ENST00000550914 REREQ9P2R6 1566 aa21.04■□□□□ 0.96
PTCH1-221ENST00000550914 FYCO1Q9BQS8 1478 aa21.02■□□□□ 0.96
PTCH1-221ENST00000550914 AFAP1Q8N556 730 aa21.02■□□□□ 0.96
PTCH1-221ENST00000550914 DIP2CQ9Y2E4 1556 aa21.02■□□□□ 0.95
PTCH1-221ENST00000550914 MLH3Q9UHC1 1453 aa21.01■□□□□ 0.95
PTCH1-221ENST00000550914 SETD1BQ9UPS6 1966 aaKnown RBP21.01■□□□□ 0.95
PTCH1-221ENST00000550914 ABCC1P33527 1531 aa21■□□□□ 0.95
PTCH1-221ENST00000550914 PREX1Q8TCU6 1659 aa20.99■□□□□ 0.95
PTCH1-221ENST00000550914 CDC42BPAQ5VT25 1732 aa20.99■□□□□ 0.95
PTCH1-221ENST00000550914 ITSN2Q9NZM3 1697 aa20.99■□□□□ 0.95
PTCH1-221ENST00000550914 HSPA2P54652 639 aa20.98■□□□□ 0.95
PTCH1-221ENST00000550914 PLPPR3Q6T4P5 718 aa20.98■□□□□ 0.95
PTCH1-221ENST00000550914 ABCA6Q8N139 1617 aa20.97■□□□□ 0.95
PTCH1-221ENST00000550914 AGLP35573 1532 aa20.95■□□□□ 0.94
PTCH1-221ENST00000550914 TRAPPC8Q9Y2L5 1435 aa20.95■□□□□ 0.94
PTCH1-221ENST00000550914 MYT1LQ9UL68 1186 aa20.94■□□□□ 0.94
PTCH1-221ENST00000550914 KIDINS220Q9ULH0 1771 aa20.92■□□□□ 0.94
PTCH1-221ENST00000550914 CEBPAP49715 358 aaPredicted RBP20.88■□□□□ 0.93
PTCH1-221ENST00000550914 C3P01024 1663 aa20.88■□□□□ 0.93
PTCH1-221ENST00000550914 SAMD9LQ8IVG5 1584 aa20.87■□□□□ 0.93
PTCH1-221ENST00000550914 GPATCH8Q9UKJ3 1502 aaKnown RBP20.87■□□□□ 0.93
PTCH1-221ENST00000550914 UHRF1BP1Q6BDS2 1440 aa20.87■□□□□ 0.93
PTCH1-221ENST00000550914 STRCQ7RTU9 1775 aa20.85■□□□□ 0.93
PTCH1-221ENST00000550914 CNTLNQ9NXG0 1405 aa20.84■□□□□ 0.93
PTCH1-221ENST00000550914 SYCP2Q9BX26 1530 aa20.83■□□□□ 0.93
PTCH1-221ENST00000550914 PLEKHH2Q8IVE3 1493 aa20.83■□□□□ 0.93
PTCH1-221ENST00000550914 ESF1Q9H501 851 aaKnown RBP20.83■□□□□ 0.93
PTCH1-221ENST00000550914 KIAA1107Q9UPP5 1409 aa20.83■□□□□ 0.93
PTCH1-221ENST00000550914 DMRT2Q9Y5R5 561 aa20.82■□□□□ 0.92
PTCH1-221ENST00000550914 CERKQ8TCT0 537 aa20.81■□□□□ 0.92
PTCH1-221ENST00000550914 MROH2AA6NES4 1674 aa20.8■□□□□ 0.92
PTCH1-221ENST00000550914 ZNF777Q9ULD5 760 aaPredicted RBP20.8■□□□□ 0.92
PTCH1-221ENST00000550914 SPAG9O60271 1321 aaKnown RBP20.79■□□□□ 0.92
PTCH1-221ENST00000550914 CCNB3Q8WWL7 1395 aa20.79■□□□□ 0.92
PTCH1-221ENST00000550914 INO80Q9ULG1 1556 aaPredicted RBP20.78■□□□□ 0.92
PTCH1-221ENST00000550914 MTUS2Q5JR59 1369 aa20.78■□□□□ 0.92
PTCH1-221ENST00000550914 CFDP1Q9UEE9 299 aaPredicted RBP20.78■□□□□ 0.92
PTCH1-221ENST00000550914 ATP7AQ04656 1500 aa20.78■□□□□ 0.92
PTCH1-221ENST00000550914 HNRNPMP52272 730 aaKnown RBP eCLIP20.76■□□□□ 0.91
PTCH1-221ENST00000550914 PLXNC1O60486 1568 aa20.76■□□□□ 0.91
PTCH1-221ENST00000550914 SUPT6HQ7KZ85 1726 aaKnown RBP20.75■□□□□ 0.91
PTCH1-221ENST00000550914 NPATQ14207 1427 aa20.74■□□□□ 0.91
PTCH1-221ENST00000550914 EHBP1L1Q8N3D4 1523 aa20.73■□□□□ 0.91
PTCH1-221ENST00000550914 PTPRTO14522 1441 aa20.73■□□□□ 0.91
PTCH1-221ENST00000550914 TIAM1Q13009 1591 aa20.72■□□□□ 0.91
PTCH1-221ENST00000550914 ADGBQ8N7X0 1667 aa20.71■□□□□ 0.91
PTCH1-221ENST00000550914 A2MP01023 1474 aa20.71■□□□□ 0.91
PTCH1-221ENST00000550914 ZMYM3Q14202 1370 aa20.7■□□□□ 0.9
PTCH1-221ENST00000550914 CEP162Q5TB80 1403 aa20.7■□□□□ 0.9
PTCH1-221ENST00000550914 CLTCQ00610 1675 aaKnown RBP20.67■□□□□ 0.9
PTCH1-221ENST00000550914 NCOA1Q15788 1441 aa20.67■□□□□ 0.9
PTCH1-221ENST00000550914 MBD5Q9P267 1494 aa20.67■□□□□ 0.9
PTCH1-221ENST00000550914 PPP6R1Q9UPN7 881 aa20.66■□□□□ 0.9
PTCH1-221ENST00000550914 RTEL1-TNFRSF6BF6WH68 1400 aa20.65■□□□□ 0.9
PTCH1-221ENST00000550914 ZNF142P52746 1687 aaPredicted RBP20.64■□□□□ 0.89
PTCH1-221ENST00000550914 ZNF644Q9H582 1327 aaPredicted RBP20.62■□□□□ 0.89
PTCH1-221ENST00000550914 CAMSAP1Q5T5Y3 1602 aa20.62■□□□□ 0.89
PTCH1-221ENST00000550914 MYO3AQ8NEV4 1616 aa20.61■□□□□ 0.89
PTCH1-221ENST00000550914 PTPRKQ15262 1439 aa20.61■□□□□ 0.89
PTCH1-221ENST00000550914 IQSEC2Q5JU85 1478 aa20.59■□□□□ 0.89
PTCH1-221ENST00000550914 GGT6Q6P531 493 aa20.59■□□□□ 0.89
PTCH1-221ENST00000550914 LTBP4Q8N2S1 1624 aa20.59■□□□□ 0.89
PTCH1-221ENST00000550914 RSPH4AQ5TD94 716 aa20.58■□□□□ 0.89
PTCH1-221ENST00000550914 DHX29Q7Z478 1369 aaKnown RBP20.58■□□□□ 0.88
PTCH1-221ENST00000550914 PLA2R1Q13018 1463 aa20.57■□□□□ 0.88
PTCH1-221ENST00000550914 NCOA2Q15596 1464 aa20.57■□□□□ 0.88
PTCH1-221ENST00000550914 CCDC141Q6ZP82 1450 aa20.57■□□□□ 0.88
PTCH1-221ENST00000550914 CEP170BQ9Y4F5 1589 aaPredicted RBP20.57■□□□□ 0.88
PTCH1-221ENST00000550914 FAM135AQ9P2D6 1515 aa20.57■□□□□ 0.88
PTCH1-221ENST00000550914 CAMSAP2Q08AD1 1489 aa20.56■□□□□ 0.88
PTCH1-221ENST00000550914 PKD2Q13563 968 aa20.53■□□□□ 0.88
PTCH1-221ENST00000550914 ARHGEF5Q12774 1597 aa20.52■□□□□ 0.88
PTCH1-221ENST00000550914 TCOF1Q13428 1488 aaKnown RBP20.52■□□□□ 0.88
PTCH1-221ENST00000550914 A2ML1A8K2U0 1454 aa20.5■□□□□ 0.87
PTCH1-221ENST00000550914 KDM5DQ9BY66 1539 aa20.49■□□□□ 0.87
PTCH1-221ENST00000550914 VPS8Q8N3P4 1428 aa20.49■□□□□ 0.87
PTCH1-221ENST00000550914 NCKAP5LQ9HCH0 1330 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms