RNA–Protein interactions for RNA: ENST00000550457.1

CCNT1-203, Transcript of cyclin T1, humanhuman

TSL 3

Gene CCNT1, Length 351 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNT1-203ENST00000550457 HOXB1P14653 301 aaPredicted RBP9□□□□□ -0.97
CCNT1-203ENST00000550457 SPNS2Q8IVW8 549 aa9□□□□□ -0.97
CCNT1-203ENST00000550457 DOK7Q18PE1 504 aa8.99□□□□□ -0.97
CCNT1-203ENST00000550457 KRTAP3-3Q9BYR6 98 aa8.99□□□□□ -0.97
CCNT1-203ENST00000550457 KRTAP3-2Q9BYR7 98 aa8.99□□□□□ -0.97
CCNT1-203ENST00000550457 ZNF710Q8N1W2 664 aa8.98□□□□□ -0.97
CCNT1-203ENST00000550457 MMRN1Q13201 1228 aa8.96□□□□□ -0.98
CCNT1-203ENST00000550457 RIMBP2O15034 1052 aa8.92□□□□□ -0.98
CCNT1-203ENST00000550457 GPR153Q6NV75 609 aa8.92□□□□□ -0.98
CCNT1-203ENST00000550457 ERBB3P21860 1342 aa8.91□□□□□ -0.98
CCNT1-203ENST00000550457 ZSWIM6Q9HCJ5 1215 aa8.9□□□□□ -0.98
CCNT1-203ENST00000550457 KIF3CO14782 793 aa8.89□□□□□ -0.99
CCNT1-203ENST00000550457 C2orf72A6NCS6 295 aa8.88□□□□□ -0.99
CCNT1-203ENST00000550457 PPP1R37O75864 691 aa8.88□□□□□ -0.99
CCNT1-203ENST00000550457 VARS2Q5ST30 1063 aaKnown RBP8.88□□□□□ -0.99
CCNT1-203ENST00000550457 ARSIQ5FYB1 569 aa8.87□□□□□ -0.99
CCNT1-203ENST00000550457 KHSRPQ92945 711 aaKnown RBP eCLIP8.87□□□□□ -0.993e-8■■□□□ 11.9
CCNT1-203ENST00000550457 HS6ST3Q8IZP7 471 aa8.82□□□□□ -1
CCNT1-203ENST00000550457 ZNF687Q8N1G0 1237 aa8.8□□□□□ -1
CCNT1-203ENST00000550457 ZNF316A6NFI3 1004 aaPredicted RBP8.78□□□□□ -1
CCNT1-203ENST00000550457 TMC2Q8TDI7 906 aa8.78□□□□□ -1
CCNT1-203ENST00000550457 CHGAP10645 457 aaKnown RBP8.77□□□□□ -1.01
CCNT1-203ENST00000550457 SLC34A2O95436 690 aa8.76□□□□□ -1.01
CCNT1-203ENST00000550457 NUDT7P0C024 238 aa8.76□□□□□ -1.01
CCNT1-203ENST00000550457 NKX1-1Q15270 411 aaPredicted RBP8.76□□□□□ -1.01
CCNT1-203ENST00000550457 PCDHGA4Q9Y5G9 962 aa8.75□□□□□ -1.01
CCNT1-203ENST00000550457 LHX6Q9UPM6 363 aa8.72□□□□□ -1.01
CCNT1-203ENST00000550457 DNAJC5Q9H3Z4 198 aa8.71□□□□□ -1.02
CCNT1-203ENST00000550457 KDM4FA0A1W2PPD8 638 aa8.69□□□□□ -1.02
CCNT1-203ENST00000550457 FOXK1P85037 733 aa8.69□□□□□ -1.02
CCNT1-203ENST00000550457 POTEEQ6S8J3 1075 aa8.69□□□□□ -1.02
CCNT1-203ENST00000550457 GPHNQ9NQX3 736 aaPredicted RBP8.69□□□□□ -1.02
CCNT1-203ENST00000550457 DSG2Q14126 1118 aa8.68□□□□□ -1.02
CCNT1-203ENST00000550457 ANKRD13DQ6ZTN6 518 aa8.68□□□□□ -1.02
CCNT1-203ENST00000550457 PLPP6Q8IY26 295 aa8.68□□□□□ -1.02
CCNT1-203ENST00000550457 RNF166Q96A37 237 aaPredicted RBP8.68□□□□□ -1.02
CCNT1-203ENST00000550457 MYT1LQ9UL68 1186 aa8.68□□□□□ -1.02
CCNT1-203ENST00000550457 LSM11P83369 360 aaKnown RBP eCLIP8.67□□□□□ -1.02
CCNT1-203ENST00000550457 PTCD2Q8WV60 388 aaKnown RBP8.67□□□□□ -1.02
CCNT1-203ENST00000550457 AXIN2Q9Y2T1 843 aa8.66□□□□□ -1.02
CCNT1-203ENST00000550457 PBX2P40425 430 aa8.63□□□□□ -1.03
CCNT1-203ENST00000550457 CRISPLD2Q9H0B8 497 aa8.61□□□□□ -1.03
CCNT1-203ENST00000550457 GTPBP6O43824 516 aaPredicted RBP8.6□□□□□ -1.03
CCNT1-203ENST00000550457 PTGER2P43116 358 aa8.6□□□□□ -1.03
CCNT1-203ENST00000550457 RYDENQ9NUL5 291 aaKnown RBP8.59□□□□□ -1.03
CCNT1-203ENST00000550457 NCKAP5LQ9HCH0 1330 aa8.58□□□□□ -1.04
CCNT1-203ENST00000550457 OXER1Q8TDS5 423 aa8.58□□□□□ -1.04
CCNT1-203ENST00000550457 PSDA5PKW4 1024 aaPredicted RBP8.57□□□□□ -1.04
CCNT1-203ENST00000550457 ARHGAP33O14559 1287 aa8.56□□□□□ -1.04
CCNT1-203ENST00000550457 UPF1Q92900 1129 aaKnown RBP eCLIP8.56□□□□□ -1.04
CCNT1-203ENST00000550457 TBC1D12O60347 775 aa8.55□□□□□ -1.04
CCNT1-203ENST00000550457 PSEN2P49810 448 aa8.55□□□□□ -1.04
CCNT1-203ENST00000550457 PPP1R15BQ5SWA1 713 aa8.55□□□□□ -1.04
CCNT1-203ENST00000550457 DMRTA1Q5VZB9 504 aa8.55□□□□□ -1.04
CCNT1-203ENST00000550457 ADGRD1Q6QNK2 874 aa8.54□□□□□ -1.04
CCNT1-203ENST00000550457 PPP4R3BQ5MIZ7 849 aa8.52□□□□□ -1.05
CCNT1-203ENST00000550457 DCAF8L2P0C7V8 631 aa8.51□□□□□ -1.05
CCNT1-203ENST00000550457 PDE4AP27815 886 aa8.51□□□□□ -1.05
CCNT1-203ENST00000550457 TK2O00142 265 aa8.49□□□□□ -1.05
CCNT1-203ENST00000550457 HRO43593 1189 aa8.49□□□□□ -1.05
CCNT1-203ENST00000550457 LARP6Q9BRS8 491 aaKnown RBP8.49□□□□□ -1.05
CCNT1-203ENST00000550457 CADPS2Q86UW7 1296 aa8.48□□□□□ -1.05
CCNT1-203ENST00000550457 KCNK17Q96T54 332 aa8.48□□□□□ -1.05
CCNT1-203ENST00000550457 MFSD10Q14728 455 aa8.47□□□□□ -1.05
CCNT1-203ENST00000550457 ZNF454Q8N9F8 522 aa8.47□□□□□ -1.05
CCNT1-203ENST00000550457 DDX27Q96GQ7 796 aaKnown RBP8.46□□□□□ -1.06
CCNT1-203ENST00000550457 FOSBP53539 338 aa8.45□□□□□ -1.06
CCNT1-203ENST00000550457 ANO8Q9HCE9 1232 aaPredicted RBP8.45□□□□□ -1.06
CCNT1-203ENST00000550457 EVI5O60447 810 aa8.44□□□□□ -1.06
CCNT1-203ENST00000550457 EMILIN3Q9NT22 766 aa8.44□□□□□ -1.06
CCNT1-203ENST00000550457 BCL2L12Q9HB09 334 aa8.43□□□□□ -1.06
CCNT1-203ENST00000550457 VPS9D1Q9Y2B5 631 aa8.43□□□□□ -1.06
CCNT1-203ENST00000550457 HCSTQ9UBK5 93 aa8.41□□□□□ -1.06
CCNT1-203ENST00000550457 JPH4Q96JJ6 628 aa8.4□□□□□ -1.06
CCNT1-203ENST00000550457 ADAM33Q9BZ11 813 aa8.4□□□□□ -1.06
CCNT1-203ENST00000550457 MAP3K9P80192 1104 aa8.39□□□□□ -1.07
CCNT1-203ENST00000550457 KCNH8Q96L42 1107 aa8.39□□□□□ -1.07
CCNT1-203ENST00000550457 KCTD12Q96CX2 325 aaKnown RBP8.38□□□□□ -1.07
CCNT1-203ENST00000550457 SLC4A5Q9BY07 1137 aa8.38□□□□□ -1.07
CCNT1-203ENST00000550457 PTPREP23469 700 aa8.37□□□□□ -1.07
CCNT1-203ENST00000550457 ZDHHC16Q969W1 377 aa8.37□□□□□ -1.07
CCNT1-203ENST00000550457 ZBED2Q9BTP6 218 aa8.37□□□□□ -1.07
CCNT1-203ENST00000550457 BHMG1C9JSJ3 638 aaPredicted RBP8.36□□□□□ -1.07
CCNT1-203ENST00000550457 PLA2G2EQ9NZK7 142 aa8.36□□□□□ -1.07
CCNT1-203ENST00000550457 PCDHGA10Q9Y5H3 936 aa8.35□□□□□ -1.07
CCNT1-203ENST00000550457 CAMK2BQ13554 666 aa8.34□□□□□ -1.07
CCNT1-203ENST00000550457 STAC3Q96MF2 364 aa8.34□□□□□ -1.07
CCNT1-203ENST00000550457 BBXQ8WY36 941 aaPredicted RBP8.33□□□□□ -1.08
CCNT1-203ENST00000550457 COL9A1P20849 921 aa8.31□□□□□ -1.08
CCNT1-203ENST00000550457 DPYSL4O14531 572 aa8.3□□□□□ -1.08
CCNT1-203ENST00000550457 PTPN5P54829 565 aa8.29□□□□□ -1.08
CCNT1-203ENST00000550457 PPP1R3GB7ZBB8 358 aa8.28□□□□□ -1.08
CCNT1-203ENST00000550457 PHF14O94880 888 aa8.28□□□□□ -1.08
CCNT1-203ENST00000550457 PROX2Q3B8N5 592 aa8.28□□□□□ -1.08
CCNT1-203ENST00000550457 TYW1BQ6NUM6 668 aa8.28□□□□□ -1.08
CCNT1-203ENST00000550457 THSD4Q6ZMP0 1018 aa8.28□□□□□ -1.08
CCNT1-203ENST00000550457 MRPL50Q8N5N7 158 aaKnown RBP8.28□□□□□ -1.08
CCNT1-203ENST00000550457 FBXW7Q969H0 707 aa8.27□□□□□ -1.09
CCNT1-203ENST00000550457 WNT2BQ93097 391 aa8.26□□□□□ -1.09
CCNT1-203ENST00000550457 NBPF3Q9H094 633 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms