RNA–Protein interactions for RNA: ENST00000550173.1

SLC38A1-208, Transcript of solute carrier family 38 member 1, human

TSL 5

Gene SLC38A1, Length 891 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SLC38A1-208	ENST00000550173	ZFYVE16	Q7Z3T8	1539 aa		32.42	■■■□□ 2.78
SLC38A1-208	ENST00000550173	YEATS2	Q9ULM3	1422 aa		32.41	■■■□□ 2.78
SLC38A1-208	ENST00000550173	MAGI2	Q86UL8	1455 aa		32.41	■■■□□ 2.78
SLC38A1-208	ENST00000550173	MADD	Q8WXG6	1647 aa		32.4	■■■□□ 2.78
SLC38A1-208	ENST00000550173	POGZ	Q7Z3K3	1410 aa		32.4	■■■□□ 2.78
SLC38A1-208	ENST00000550173	CASKIN1	Q8WXD9	1431 aa		32.39	■■■□□ 2.78
SLC38A1-208	ENST00000550173	PCF11	O94913	1555 aa	Known RBP	32.38	■■■□□ 2.77
SLC38A1-208	ENST00000550173	CCDC18	Q5T9S5	1454 aa		32.35	■■■□□ 2.77
SLC38A1-208	ENST00000550173	ARHGAP5	Q13017	1502 aa		32.34	■■■□□ 2.77
SLC38A1-208	ENST00000550173	RIMS1	Q86UR5	1692 aa	Known RBP	32.31	■■■□□ 2.76
SLC38A1-208	ENST00000550173	SIGLEC1	Q9BZZ2	1709 aa		32.29	■■■□□ 2.76
SLC38A1-208	ENST00000550173	MLEC	Q14165	292 aa		32.26	■■■□□ 2.75
SLC38A1-208	ENST00000550173	FYCO1	Q9BQS8	1478 aa		32.26	■■■□□ 2.75
SLC38A1-208	ENST00000550173	ZNF518A	Q6AHZ1	1483 aa		32.25	■■■□□ 2.75
SLC38A1-208	ENST00000550173	ATP10A	O60312	1499 aa		32.24	■■■□□ 2.75
SLC38A1-208	ENST00000550173	CDC42BPB	Q9Y5S2	1711 aa		32.24	■■■□□ 2.75
SLC38A1-208	ENST00000550173	AFAP1	Q8N556	730 aa		32.23	■■■□□ 2.75
SLC38A1-208	ENST00000550173	ILDR1	Q86SU0	546 aa	Predicted RBP	32.22	■■■□□ 2.75
SLC38A1-208	ENST00000550173	MYT1L	Q9UL68	1186 aa		32.21	■■■□□ 2.75
SLC38A1-208	ENST00000550173	C9orf84	Q5VXU9	1444 aa		32.2	■■■□□ 2.75
SLC38A1-208	ENST00000550173	PLPPR3	Q6T4P5	718 aa		32.2	■■■□□ 2.75
SLC38A1-208	ENST00000550173	PREX2	Q70Z35	1606 aa		32.19	■■■□□ 2.74
SLC38A1-208	ENST00000550173	KDM5C	P41229	1560 aa		32.17	■■■□□ 2.74
SLC38A1-208	ENST00000550173	FER1L4	A9Z1Z3	1794 aa		32.14	■■■□□ 2.74
SLC38A1-208	ENST00000550173	LMTK3	Q96Q04	1460 aa		32.12	■■■□□ 2.73
SLC38A1-208	ENST00000550173	CDC42BPA	Q5VT25	1732 aa		32.12	■■■□□ 2.73
SLC38A1-208	ENST00000550173	ABCC1	P33527	1531 aa		32.1	■■■□□ 2.73
SLC38A1-208	ENST00000550173	ARHGEF12	Q9NZN5	1544 aa		32.09	■■■□□ 2.73
SLC38A1-208	ENST00000550173	TRAPPC8	Q9Y2L5	1435 aa		32.09	■■■□□ 2.73
SLC38A1-208	ENST00000550173	ITSN2	Q9NZM3	1697 aa		32.07	■■■□□ 2.72
SLC38A1-208	ENST00000550173	DIP2C	Q9Y2E4	1556 aa		32.07	■■■□□ 2.72
SLC38A1-208	ENST00000550173	MLH3	Q9UHC1	1453 aa		32.06	■■■□□ 2.72
SLC38A1-208	ENST00000550173	ZNF777	Q9ULD5	760 aa	Predicted RBP	32.05	■■■□□ 2.72
SLC38A1-208	ENST00000550173	ABCA6	Q8N139	1617 aa		32.02	■■■□□ 2.72
SLC38A1-208	ENST00000550173	GPATCH8	Q9UKJ3	1502 aa	Known RBP	32	■■■□□ 2.71
SLC38A1-208	ENST00000550173	HSPA2	P54652	639 aa		32	■■■□□ 2.71
SLC38A1-208	ENST00000550173	RERE	Q9P2R6	1566 aa		31.99	■■■□□ 2.71
SLC38A1-208	ENST00000550173	MTUS2	Q5JR59	1369 aa		31.99	■■■□□ 2.71
SLC38A1-208	ENST00000550173	SAMD9L	Q8IVG5	1584 aa		31.97	■■■□□ 2.71
SLC38A1-208	ENST00000550173	CCNB3	Q8WWL7	1395 aa		31.95	■■■□□ 2.71
SLC38A1-208	ENST00000550173	CEP162	Q5TB80	1403 aa		31.95	■■■□□ 2.71
SLC38A1-208	ENST00000550173	CEBPA	P49715	358 aa	Predicted RBP	31.95	■■■□□ 2.71
SLC38A1-208	ENST00000550173	KIDINS220	Q9ULH0	1771 aa		31.94	■■■□□ 2.7
SLC38A1-208	ENST00000550173	CFDP1	Q9UEE9	299 aa	Predicted RBP	31.94	■■■□□ 2.7
SLC38A1-208	ENST00000550173	SYCP2	Q9BX26	1530 aa		31.93	■■■□□ 2.7
SLC38A1-208	ENST00000550173	HNRNPM	P52272	730 aa	Known RBP eCLIP	31.92	■■■□□ 2.7	6e-7	■■■■□ 23.4
SLC38A1-208	ENST00000550173	AGL	P35573	1532 aa		31.9	■■■□□ 2.7
SLC38A1-208	ENST00000550173	SPAG9	O60271	1321 aa	Known RBP	31.88	■■■□□ 2.69
SLC38A1-208	ENST00000550173	PLEKHH2	Q8IVE3	1493 aa		31.87	■■■□□ 2.69
SLC38A1-208	ENST00000550173	ESF1	Q9H501	851 aa	Known RBP	31.87	■■■□□ 2.69
SLC38A1-208	ENST00000550173	KIAA1107	Q9UPP5	1409 aa		31.85	■■■□□ 2.69
SLC38A1-208	ENST00000550173	PREX1	Q8TCU6	1659 aa		31.85	■■■□□ 2.69
SLC38A1-208	ENST00000550173	EHBP1L1	Q8N3D4	1523 aa		31.84	■■■□□ 2.69
SLC38A1-208	ENST00000550173	FBXO41	Q8TF61	875 aa		31.8	■■■□□ 2.68
SLC38A1-208	ENST00000550173	TIAM1	Q13009	1591 aa		31.8	■■■□□ 2.68
SLC38A1-208	ENST00000550173	SETD1B	Q9UPS6	1966 aa	Known RBP	31.79	■■■□□ 2.68
SLC38A1-208	ENST00000550173	ATP7A	Q04656	1500 aa		31.78	■■■□□ 2.68
SLC38A1-208	ENST00000550173	C3	P01024	1663 aa		31.77	■■■□□ 2.68
SLC38A1-208	ENST00000550173	ZNF644	Q9H582	1327 aa	Predicted RBP	31.75	■■■□□ 2.67
SLC38A1-208	ENST00000550173	UHRF1BP1	Q6BDS2	1440 aa		31.75	■■■□□ 2.67
SLC38A1-208	ENST00000550173	LOC105371045	A0A1W2PR82	267 aa		31.74	■■■□□ 2.67
SLC38A1-208	ENST00000550173	CNTLN	Q9NXG0	1405 aa		31.74	■■■□□ 2.67
SLC38A1-208	ENST00000550173	INO80	Q9ULG1	1556 aa	Predicted RBP	31.73	■■■□□ 2.67
SLC38A1-208	ENST00000550173	SUPT6H	Q7KZ85	1726 aa	Known RBP	31.73	■■■□□ 2.67
SLC38A1-208	ENST00000550173	A2M	P01023	1474 aa		31.69	■■■□□ 2.66
SLC38A1-208	ENST00000550173	NCOA2	Q15596	1464 aa		31.65	■■■□□ 2.66
SLC38A1-208	ENST00000550173	MBD5	Q9P267	1494 aa		31.65	■■■□□ 2.66
SLC38A1-208	ENST00000550173	PLXNC1	O60486	1568 aa		31.64	■■■□□ 2.66
SLC38A1-208	ENST00000550173	MROH2A	A6NES4	1674 aa		31.62	■■■□□ 2.65
SLC38A1-208	ENST00000550173	VPS8	Q8N3P4	1428 aa		31.62	■■■□□ 2.65
SLC38A1-208	ENST00000550173	ADGB	Q8N7X0	1667 aa		31.61	■■■□□ 2.65
SLC38A1-208	ENST00000550173	GGT6	Q6P531	493 aa		31.61	■■■□□ 2.65
SLC38A1-208	ENST00000550173	ZMYM3	Q14202	1370 aa		31.6	■■■□□ 2.65
SLC38A1-208	ENST00000550173	DMRT2	Q9Y5R5	561 aa		31.6	■■■□□ 2.65
SLC38A1-208	ENST00000550173	STRC	Q7RTU9	1775 aa		31.6	■■■□□ 2.65
SLC38A1-208	ENST00000550173	RTEL1-TNFRSF6B	F6WH68	1400 aa		31.58	■■■□□ 2.65
SLC38A1-208	ENST00000550173	CAMSAP2	Q08AD1	1489 aa		31.57	■■■□□ 2.64
SLC38A1-208	ENST00000550173	CLTC	Q00610	1675 aa	Known RBP	31.57	■■■□□ 2.64
SLC38A1-208	ENST00000550173	CERK	Q8TCT0	537 aa		31.56	■■■□□ 2.64
SLC38A1-208	ENST00000550173	NPAT	Q14207	1427 aa		31.55	■■■□□ 2.64
SLC38A1-208	ENST00000550173	CCDC141	Q6ZP82	1450 aa		31.53	■■■□□ 2.64
SLC38A1-208	ENST00000550173	RSPH4A	Q5TD94	716 aa		31.52	■■■□□ 2.64
SLC38A1-208	ENST00000550173	LRRC9	Q6ZRR7	1453 aa		31.52	■■■□□ 2.64
SLC38A1-208	ENST00000550173	DHX29	Q7Z478	1369 aa	Known RBP	31.51	■■■□□ 2.63
SLC38A1-208	ENST00000550173	PPP6R1	Q9UPN7	881 aa		31.5	■■■□□ 2.63
SLC38A1-208	ENST00000550173	PTPRT	O14522	1441 aa		31.45	■■■□□ 2.63
SLC38A1-208	ENST00000550173	PTPRK	Q15262	1439 aa		31.43	■■■□□ 2.62
SLC38A1-208	ENST00000550173	KIF3B	O15066	747 aa		31.43	■■■□□ 2.62
SLC38A1-208	ENST00000550173	TSPY4	P0CV99	314 aa		31.43	■■■□□ 2.62
SLC38A1-208	ENST00000550173	TSPY10	P0CW01	314 aa		31.43	■■■□□ 2.62
SLC38A1-208	ENST00000550173	KANK4	Q5T7N3	995 aa	Predicted RBP	31.43	■■■□□ 2.62
SLC38A1-208	ENST00000550173	ARHGEF5	Q12774	1597 aa		31.43	■■■□□ 2.62
SLC38A1-208	ENST00000550173	NCOA1	Q15788	1441 aa		31.42	■■■□□ 2.62
SLC38A1-208	ENST00000550173	MAP3K1	Q13233	1512 aa		31.42	■■■□□ 2.62
SLC38A1-208	ENST00000550173	CAMSAP1	Q5T5Y3	1602 aa		31.4	■■■□□ 2.62
SLC38A1-208	ENST00000550173	MYO3A	Q8NEV4	1616 aa		31.37	■■■□□ 2.61
SLC38A1-208	ENST00000550173	ZNF142	P52746	1687 aa	Predicted RBP	31.34	■■■□□ 2.61
SLC38A1-208	ENST00000550173	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	31.32	■■■□□ 2.6
SLC38A1-208	ENST00000550173	MYOM3	Q5VTT5	1437 aa		31.32	■■■□□ 2.6
SLC38A1-208	ENST00000550173	NCKAP5L	Q9HCH0	1330 aa		31.31	■■■□□ 2.6

Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms