RNA–Protein interactions for RNA: ENST00000548650.1

CHMP1A-205, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-205ENST00000548650 CASKIN1Q8WXD9 1431 aa28.55■■■□□ 2.16
CHMP1A-205ENST00000548650 CDK11AQ9UQ88 783 aaPredicted RBP28.54■■■□□ 2.16
CHMP1A-205ENST00000548650 CCDC18Q5T9S5 1454 aa28.53■■■□□ 2.16
CHMP1A-205ENST00000548650 MAGI2Q86UL8 1455 aa28.53■■■□□ 2.16
CHMP1A-205ENST00000548650 CLIP1P30622 1438 aa28.53■■■□□ 2.16
CHMP1A-205ENST00000548650 YEATS2Q9ULM3 1422 aa28.53■■■□□ 2.16
CHMP1A-205ENST00000548650 SCAPERQ9BY12 1400 aa28.52■■■□□ 2.16
CHMP1A-205ENST00000548650 RIMS1Q86UR5 1692 aaKnown RBP28.5■■■□□ 2.15
CHMP1A-205ENST00000548650 FYCO1Q9BQS8 1478 aa28.49■■■□□ 2.15
CHMP1A-205ENST00000548650 CDC42BPBQ9Y5S2 1711 aa28.49■■■□□ 2.15
CHMP1A-205ENST00000548650 ARHGAP5Q13017 1502 aa28.48■■■□□ 2.15
CHMP1A-205ENST00000548650 PREX2Q70Z35 1606 aa28.48■■■□□ 2.15
CHMP1A-205ENST00000548650 ARID4BQ4LE39 1312 aaPredicted RBP28.47■■■□□ 2.15
CHMP1A-205ENST00000548650 KDM5CP41229 1560 aa28.44■■■□□ 2.14
CHMP1A-205ENST00000548650 EFCAB2Q5VUJ9 269 aa28.43■■■□□ 2.14
CHMP1A-205ENST00000548650 ZNF518AQ6AHZ1 1483 aa28.41■■■□□ 2.14
CHMP1A-205ENST00000548650 CDC42BPAQ5VT25 1732 aa28.4■■■□□ 2.14
CHMP1A-205ENST00000548650 FER1L4A9Z1Z3 1794 aa28.39■■■□□ 2.13
CHMP1A-205ENST00000548650 ABCC1P33527 1531 aa28.38■■■□□ 2.13
CHMP1A-205ENST00000548650 ITSN2Q9NZM3 1697 aa28.36■■■□□ 2.13
CHMP1A-205ENST00000548650 C9orf84Q5VXU9 1444 aa28.35■■■□□ 2.13
CHMP1A-205ENST00000548650 ATP10AO60312 1499 aa28.35■■■□□ 2.13
CHMP1A-205ENST00000548650 DIP2CQ9Y2E4 1556 aa28.33■■■□□ 2.12
CHMP1A-205ENST00000548650 LMTK3Q96Q04 1460 aa28.32■■■□□ 2.12
CHMP1A-205ENST00000548650 ARHGEF12Q9NZN5 1544 aa28.31■■■□□ 2.12
CHMP1A-205ENST00000548650 ABCA6Q8N139 1617 aa28.3■■■□□ 2.12
CHMP1A-205ENST00000548650 REREQ9P2R6 1566 aa28.28■■■□□ 2.12
CHMP1A-205ENST00000548650 AFAP1Q8N556 730 aa28.25■■■□□ 2.11
CHMP1A-205ENST00000548650 MLH3Q9UHC1 1453 aa28.25■■■□□ 2.11
CHMP1A-205ENST00000548650 SAMD9LQ8IVG5 1584 aa28.24■■■□□ 2.11
CHMP1A-205ENST00000548650 TRAPPC8Q9Y2L5 1435 aa28.24■■■□□ 2.11
CHMP1A-205ENST00000548650 MLECQ14165 292 aa28.21■■■□□ 2.11
CHMP1A-205ENST00000548650 KIDINS220Q9ULH0 1771 aa28.21■■■□□ 2.11
CHMP1A-205ENST00000548650 GPATCH8Q9UKJ3 1502 aaKnown RBP28.2■■■□□ 2.1
CHMP1A-205ENST00000548650 SYCP2Q9BX26 1530 aa28.18■■■□□ 2.1
CHMP1A-205ENST00000548650 CEP162Q5TB80 1403 aa28.18■■■□□ 2.1
CHMP1A-205ENST00000548650 ILDR1Q86SU0 546 aaPredicted RBP28.17■■■□□ 2.1
CHMP1A-205ENST00000548650 AGLP35573 1532 aa28.14■■■□□ 2.1
CHMP1A-205ENST00000548650 EHBP1L1Q8N3D4 1523 aa28.13■■■□□ 2.09
CHMP1A-205ENST00000548650 PREX1Q8TCU6 1659 aa28.12■■■□□ 2.09
CHMP1A-205ENST00000548650 TIAM1Q13009 1591 aa28.11■■■□□ 2.09
CHMP1A-205ENST00000548650 PLPPR3Q6T4P5 718 aa28.1■■■□□ 2.09
CHMP1A-205ENST00000548650 MTUS2Q5JR59 1369 aa28.1■■■□□ 2.09
CHMP1A-205ENST00000548650 INO80Q9ULG1 1556 aaPredicted RBP28.09■■■□□ 2.09
CHMP1A-205ENST00000548650 MYT1LQ9UL68 1186 aa28.09■■■□□ 2.09
CHMP1A-205ENST00000548650 CCNB3Q8WWL7 1395 aa28.06■■■□□ 2.08
CHMP1A-205ENST00000548650 PLEKHH2Q8IVE3 1493 aa28.06■■■□□ 2.08
CHMP1A-205ENST00000548650 C3P01024 1663 aa28.05■■■□□ 2.08
CHMP1A-205ENST00000548650 KIAA1107Q9UPP5 1409 aa28.05■■■□□ 2.08
CHMP1A-205ENST00000548650 ATP7AQ04656 1500 aa28.04■■■□□ 2.08
CHMP1A-205ENST00000548650 ZNF777Q9ULD5 760 aaPredicted RBP28.04■■■□□ 2.08
CHMP1A-205ENST00000548650 HSPA2P54652 639 aa28.03■■■□□ 2.08
CHMP1A-205ENST00000548650 PLXNC1O60486 1568 aa28.01■■■□□ 2.07
CHMP1A-205ENST00000548650 CFDP1Q9UEE9 299 aaPredicted RBP28■■■□□ 2.07
CHMP1A-205ENST00000548650 CEBPAP49715 358 aaPredicted RBP27.98■■■□□ 2.07
CHMP1A-205ENST00000548650 SUPT6HQ7KZ85 1726 aaKnown RBP27.98■■■□□ 2.07
CHMP1A-205ENST00000548650 SPAG9O60271 1321 aaKnown RBP27.96■■■□□ 2.07
CHMP1A-205ENST00000548650 HNRNPMP52272 730 aaKnown RBP eCLIP27.96■■■□□ 2.07
CHMP1A-205ENST00000548650 MROH2AA6NES4 1674 aa27.94■■■□□ 2.06
CHMP1A-205ENST00000548650 SETD1BQ9UPS6 1966 aaKnown RBP27.94■■■□□ 2.06
CHMP1A-205ENST00000548650 ADGBQ8N7X0 1667 aa27.93■■■□□ 2.06
CHMP1A-205ENST00000548650 CNTLNQ9NXG0 1405 aa27.92■■■□□ 2.06
CHMP1A-205ENST00000548650 NCOA2Q15596 1464 aa27.91■■■□□ 2.06
CHMP1A-205ENST00000548650 MBD5Q9P267 1494 aa27.91■■■□□ 2.06
CHMP1A-205ENST00000548650 UHRF1BP1Q6BDS2 1440 aa27.91■■■□□ 2.06
CHMP1A-205ENST00000548650 A2MP01023 1474 aa27.89■■■□□ 2.06
CHMP1A-205ENST00000548650 STRCQ7RTU9 1775 aa27.88■■■□□ 2.05
CHMP1A-205ENST00000548650 VPS8Q8N3P4 1428 aa27.88■■■□□ 2.05
CHMP1A-205ENST00000548650 ZNF644Q9H582 1327 aaPredicted RBP27.88■■■□□ 2.05
CHMP1A-205ENST00000548650 CLTCQ00610 1675 aaKnown RBP27.85■■■□□ 2.05
CHMP1A-205ENST00000548650 CAMSAP2Q08AD1 1489 aa27.84■■■□□ 2.05
CHMP1A-205ENST00000548650 FBXO41Q8TF61 875 aa27.82■■■□□ 2.04
CHMP1A-205ENST00000548650 ESF1Q9H501 851 aaKnown RBP27.82■■■□□ 2.04
CHMP1A-205ENST00000548650 LOC105371045A0A1W2PR82 267 aa27.8■■■□□ 2.04
CHMP1A-205ENST00000548650 RTEL1-TNFRSF6BF6WH68 1400 aa27.8■■■□□ 2.04
CHMP1A-205ENST00000548650 CCDC141Q6ZP82 1450 aa27.8■■■□□ 2.04
CHMP1A-205ENST00000548650 LRRC9Q6ZRR7 1453 aa27.79■■■□□ 2.04
CHMP1A-205ENST00000548650 NPATQ14207 1427 aa27.78■■■□□ 2.04
CHMP1A-205ENST00000548650 ARHGEF5Q12774 1597 aa27.76■■■□□ 2.03
CHMP1A-205ENST00000548650 MAP3K1Q13233 1512 aa27.75■■■□□ 2.03
CHMP1A-205ENST00000548650 MYO3AQ8NEV4 1616 aa27.74■■■□□ 2.03
CHMP1A-205ENST00000548650 ZNF142P52746 1687 aaPredicted RBP27.74■■■□□ 2.03
CHMP1A-205ENST00000548650 ZMYM3Q14202 1370 aa27.73■■■□□ 2.03
CHMP1A-205ENST00000548650 PTPRKQ15262 1439 aa27.67■■■□□ 2.02
CHMP1A-205ENST00000548650 NCOA1Q15788 1441 aa27.67■■■□□ 2.02
CHMP1A-205ENST00000548650 DHX29Q7Z478 1369 aaKnown RBP27.67■■■□□ 2.02
CHMP1A-205ENST00000548650 GGT6Q6P531 493 aa27.65■■■□□ 2.02
CHMP1A-205ENST00000548650 FAM135AQ9P2D6 1515 aa27.65■■■□□ 2.02
CHMP1A-205ENST00000548650 PTPRTO14522 1441 aa27.65■■■□□ 2.02
CHMP1A-205ENST00000548650 CEP170BQ9Y4F5 1589 aaPredicted RBP27.65■■■□□ 2.02
CHMP1A-205ENST00000548650 CAMSAP1Q5T5Y3 1602 aa27.64■■■□□ 2.02
CHMP1A-205ENST00000548650 MAST1Q9Y2H9 1570 aa27.64■■■□□ 2.01
CHMP1A-205ENST00000548650 CERKQ8TCT0 537 aa27.62■■■□□ 2.01
CHMP1A-205ENST00000548650 DMRT2Q9Y5R5 561 aa27.62■■■□□ 2.01
CHMP1A-205ENST00000548650 KDM5DQ9BY66 1539 aa27.62■■■□□ 2.01
CHMP1A-205ENST00000548650 RSPH4AQ5TD94 716 aa27.61■■■□□ 2.01
CHMP1A-205ENST00000548650 PPP6R1Q9UPN7 881 aa27.61■■■□□ 2.01
CHMP1A-205ENST00000548650 MYOM3Q5VTT5 1437 aa27.6■■■□□ 2.01
CHMP1A-205ENST00000548650 KANK4Q5T7N3 995 aaPredicted RBP27.6■■■□□ 2.01
CHMP1A-205ENST00000548650 MIA2Q96PC5 1412 aa27.58■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 272.7 ms