RNA–Protein interactions for RNA: ENST00000547654.5

SCAF11-210, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 416 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-210ENST00000547654 ECM2O94769 699 aaPredicted RBP11.89□□□□□ -0.51
SCAF11-210ENST00000547654 NLRP6P59044 892 aa11.88□□□□□ -0.51
SCAF11-210ENST00000547654 HOXB1P14653 301 aaPredicted RBP11.87□□□□□ -0.51
SCAF11-210ENST00000547654 STK25O00506 426 aa11.86□□□□□ -0.51
SCAF11-210ENST00000547654 TMEM92Q6UXU6 159 aa11.85□□□□□ -0.51
SCAF11-210ENST00000547654 ERBB3P21860 1342 aa11.84□□□□□ -0.51
SCAF11-210ENST00000547654 FBXO22Q8NEZ5 403 aa11.8□□□□□ -0.52
SCAF11-210ENST00000547654 ZSWIM6Q9HCJ5 1215 aa11.8□□□□□ -0.52
SCAF11-210ENST00000547654 VARS2Q5ST30 1063 aaKnown RBP11.77□□□□□ -0.53
SCAF11-210ENST00000547654 MFRPQ9BY79 579 aa11.77□□□□□ -0.53
SCAF11-210ENST00000547654 MYT1LQ9UL68 1186 aa11.77□□□□□ -0.53
SCAF11-210ENST00000547654 RGL2O15211 777 aa11.75□□□□□ -0.53
SCAF11-210ENST00000547654 PKD2Q13563 968 aa11.75□□□□□ -0.53
SCAF11-210ENST00000547654 GPR153Q6NV75 609 aa11.7□□□□□ -0.54
SCAF11-210ENST00000547654 ARSIQ5FYB1 569 aa11.68□□□□□ -0.54
SCAF11-210ENST00000547654 C2orf72A6NCS6 295 aa11.65□□□□□ -0.54
SCAF11-210ENST00000547654 ZNF687Q8N1G0 1237 aa11.63□□□□□ -0.55
SCAF11-210ENST00000547654 TMC2Q8TDI7 906 aa11.63□□□□□ -0.55
SCAF11-210ENST00000547654 KIF3CO14782 793 aa11.62□□□□□ -0.55
SCAF11-210ENST00000547654 KHSRPQ92945 711 aaKnown RBP eCLIP11.61□□□□□ -0.554e-7■■■■□ 25
SCAF11-210ENST00000547654 ZNF316A6NFI3 1004 aaPredicted RBP11.59□□□□□ -0.55
SCAF11-210ENST00000547654 NUDT7P0C024 238 aa11.55□□□□□ -0.56
SCAF11-210ENST00000547654 PPP1R37O75864 691 aa11.54□□□□□ -0.56
SCAF11-210ENST00000547654 HS6ST3Q8IZP7 471 aa11.54□□□□□ -0.56
SCAF11-210ENST00000547654 PCDHGA4Q9Y5G9 962 aa11.53□□□□□ -0.56
SCAF11-210ENST00000547654 SLC34A2O95436 690 aa11.52□□□□□ -0.57
SCAF11-210ENST00000547654 PTGER2P43116 358 aa11.52□□□□□ -0.57
SCAF11-210ENST00000547654 ANKRD13DQ6ZTN6 518 aa11.52□□□□□ -0.57
SCAF11-210ENST00000547654 CHGAP10645 457 aaKnown RBP11.48□□□□□ -0.57
SCAF11-210ENST00000547654 LSM11P83369 360 aaKnown RBP eCLIP11.48□□□□□ -0.57
SCAF11-210ENST00000547654 LHX6Q9UPM6 363 aa11.48□□□□□ -0.57
SCAF11-210ENST00000547654 PBX2P40425 430 aa11.47□□□□□ -0.57
SCAF11-210ENST00000547654 PLA2G2EQ9NZK7 142 aa11.46□□□□□ -0.57
SCAF11-210ENST00000547654 PSDA5PKW4 1024 aaPredicted RBP11.41□□□□□ -0.58
SCAF11-210ENST00000547654 FOXK1P85037 733 aa11.4□□□□□ -0.58
SCAF11-210ENST00000547654 PLPP6Q8IY26 295 aa11.4□□□□□ -0.58
SCAF11-210ENST00000547654 GPHNQ9NQX3 736 aaPredicted RBP11.4□□□□□ -0.58
SCAF11-210ENST00000547654 AXIN2Q9Y2T1 843 aa11.4□□□□□ -0.58
SCAF11-210ENST00000547654 RYDENQ9NUL5 291 aaKnown RBP11.39□□□□□ -0.59
SCAF11-210ENST00000547654 PTCD2Q8WV60 388 aaKnown RBP11.38□□□□□ -0.59
SCAF11-210ENST00000547654 DSG2Q14126 1118 aa11.36□□□□□ -0.59
SCAF11-210ENST00000547654 TBC1D12O60347 775 aa11.34□□□□□ -0.59
SCAF11-210ENST00000547654 POTEEQ6S8J3 1075 aa11.34□□□□□ -0.59
SCAF11-210ENST00000547654 ARHGAP33O14559 1287 aa11.33□□□□□ -0.6
SCAF11-210ENST00000547654 NKX1-1Q15270 411 aaPredicted RBP11.33□□□□□ -0.6
SCAF11-210ENST00000547654 PPP4R3BQ5MIZ7 849 aa11.32□□□□□ -0.6
SCAF11-210ENST00000547654 DNAJC5Q9H3Z4 198 aa11.32□□□□□ -0.6
SCAF11-210ENST00000547654 KDM4FA0A1W2PPD8 638 aa11.3□□□□□ -0.6
SCAF11-210ENST00000547654 ADGRD1Q6QNK2 874 aa11.3□□□□□ -0.6
SCAF11-210ENST00000547654 UPF1Q92900 1129 aaKnown RBP eCLIP11.27□□□□□ -0.618e-6■□□□□ 8.3
SCAF11-210ENST00000547654 KCNH8Q96L42 1107 aa11.27□□□□□ -0.61
SCAF11-210ENST00000547654 RTN4Q9NQC3 1192 aaKnown RBP11.26□□□□□ -0.61
SCAF11-210ENST00000547654 PSEN2P49810 448 aa11.25□□□□□ -0.61
SCAF11-210ENST00000547654 DCAF8L2P0C7V8 631 aa11.24□□□□□ -0.61
SCAF11-210ENST00000547654 PPP1R15BQ5SWA1 713 aa11.24□□□□□ -0.61
SCAF11-210ENST00000547654 CRISPLD2Q9H0B8 497 aa11.24□□□□□ -0.61
SCAF11-210ENST00000547654 HCSTQ9UBK5 93 aa11.24□□□□□ -0.61
SCAF11-210ENST00000547654 TK2O00142 265 aa11.23□□□□□ -0.61
SCAF11-210ENST00000547654 OXER1Q8TDS5 423 aa11.23□□□□□ -0.61
SCAF11-210ENST00000547654 KCNK17Q96T54 332 aa11.23□□□□□ -0.61
SCAF11-210ENST00000547654 DMRTA1Q5VZB9 504 aa11.22□□□□□ -0.61
SCAF11-210ENST00000547654 STAC3Q96MF2 364 aa11.21□□□□□ -0.61
SCAF11-210ENST00000547654 ZNF454Q8N9F8 522 aa11.2□□□□□ -0.62
SCAF11-210ENST00000547654 PDE4AP27815 886 aa11.19□□□□□ -0.62
SCAF11-210ENST00000547654 NCKAP5LQ9HCH0 1330 aa11.17□□□□□ -0.62
SCAF11-210ENST00000547654 AMER1Q5JTC6 1135 aaPredicted RBP11.17□□□□□ -0.62
SCAF11-210ENST00000547654 HRO43593 1189 aa11.15□□□□□ -0.62
SCAF11-210ENST00000547654 GTPBP6O43824 516 aaPredicted RBP11.15□□□□□ -0.62
SCAF11-210ENST00000547654 DDX27Q96GQ7 796 aaKnown RBP11.14□□□□□ -0.63
SCAF11-210ENST00000547654 LARP6Q9BRS8 491 aaKnown RBP11.14□□□□□ -0.63
SCAF11-210ENST00000547654 KCTD12Q96CX2 325 aaKnown RBP11.13□□□□□ -0.63
SCAF11-210ENST00000547654 BCL2L12Q9HB09 334 aa11.12□□□□□ -0.63
SCAF11-210ENST00000547654 EVI5O60447 810 aa11.1□□□□□ -0.63
SCAF11-210ENST00000547654 FOSBP53539 338 aa11.1□□□□□ -0.63
SCAF11-210ENST00000547654 JPH4Q96JJ6 628 aa11.1□□□□□ -0.63
SCAF11-210ENST00000547654 IRX2Q9BZI1 471 aaPredicted RBP11.1□□□□□ -0.63
SCAF11-210ENST00000547654 VPS9D1Q9Y2B5 631 aa11.1□□□□□ -0.63
SCAF11-210ENST00000547654 PTPREP23469 700 aa11.09□□□□□ -0.63
SCAF11-210ENST00000547654 MAP3K9P80192 1104 aa11.07□□□□□ -0.64
SCAF11-210ENST00000547654 MFSD10Q14728 455 aa11.05□□□□□ -0.64
SCAF11-210ENST00000547654 ZDHHC16Q969W1 377 aa11.05□□□□□ -0.64
SCAF11-210ENST00000547654 SLC4A5Q9BY07 1137 aa11.04□□□□□ -0.64
SCAF11-210ENST00000547654 ANO8Q9HCE9 1232 aaPredicted RBP11.04□□□□□ -0.64
SCAF11-210ENST00000547654 GOLGA8CPA6NN73 597 aa11.02□□□□□ -0.65
SCAF11-210ENST00000547654 PTPN5P54829 565 aa11.01□□□□□ -0.65
SCAF11-210ENST00000547654 ZBED2Q9BTP6 218 aa11.01□□□□□ -0.65
SCAF11-210ENST00000547654 ADAM33Q9BZ11 813 aa11.01□□□□□ -0.65
SCAF11-210ENST00000547654 EMILIN3Q9NT22 766 aa11□□□□□ -0.65
SCAF11-210ENST00000547654 MRPL50Q8N5N7 158 aaKnown RBP10.99□□□□□ -0.65
SCAF11-210ENST00000547654 NBPF3Q9H094 633 aa10.99□□□□□ -0.65
SCAF11-210ENST00000547654 CADPS2Q86UW7 1296 aa10.98□□□□□ -0.65
SCAF11-210ENST00000547654 WNT2BQ93097 391 aa10.96□□□□□ -0.65
SCAF11-210ENST00000547654 PPP1R3GB7ZBB8 358 aa10.95□□□□□ -0.66
SCAF11-210ENST00000547654 BHMG1C9JSJ3 638 aaPredicted RBP10.95□□□□□ -0.66
SCAF11-210ENST00000547654 THSD4Q6ZMP0 1018 aa10.95□□□□□ -0.66
SCAF11-210ENST00000547654 FBXW7Q969H0 707 aa10.94□□□□□ -0.66
SCAF11-210ENST00000547654 PCDHGA10Q9Y5H3 936 aa10.94□□□□□ -0.66
SCAF11-210ENST00000547654 RGS20O76081 388 aa10.93□□□□□ -0.66
SCAF11-210ENST00000547654 TYW1BQ6NUM6 668 aa10.92□□□□□ -0.66
SCAF11-210ENST00000547654 PHF14O94880 888 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms