RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 TCOF1Q13428 1488 aaKnown RBP24.55■■□□□ 1.52
PRPF40A-212ENST00000545856 PTPN23Q9H3S7 1636 aa24.54■■□□□ 1.52
PRPF40A-212ENST00000545856 PLEKHH2Q8IVE3 1493 aa24.53■■□□□ 1.52
PRPF40A-212ENST00000545856 PPARGC1BQ86YN6 1023 aaKnown RBP24.53■■□□□ 1.52
PRPF40A-212ENST00000545856 CD109Q6YHK3 1445 aa24.52■■□□□ 1.52
PRPF40A-212ENST00000545856 ARHGAP5Q13017 1502 aa24.51■■□□□ 1.51
PRPF40A-212ENST00000545856 CFDP1Q9UEE9 299 aaPredicted RBP24.49■■□□□ 1.51
PRPF40A-212ENST00000545856 TEX14Q8IWB6 1497 aa24.49■■□□□ 1.51
PRPF40A-212ENST00000545856 NEO1Q92859 1461 aa24.48■■□□□ 1.51
PRPF40A-212ENST00000545856 EFCAB2Q5VUJ9 269 aa24.45■■□□□ 1.5
PRPF40A-212ENST00000545856 KIAA1107Q9UPP5 1409 aa24.45■■□□□ 1.5
PRPF40A-212ENST00000545856 FANCAO15360 1455 aa24.45■■□□□ 1.5
PRPF40A-212ENST00000545856 CAMSAP2Q08AD1 1489 aa24.45■■□□□ 1.5
PRPF40A-212ENST00000545856 FAM69CQ0P6D2 419 aa24.44■■□□□ 1.5
PRPF40A-212ENST00000545856 TRIM26Q12899 539 aaPredicted RBP24.44■■□□□ 1.5
PRPF40A-212ENST00000545856 SAMD9LQ8IVG5 1584 aa24.44■■□□□ 1.5
PRPF40A-212ENST00000545856 ARHGEF5Q12774 1597 aa24.43■■□□□ 1.5
PRPF40A-212ENST00000545856 PPRC1Q5VV67 1664 aaKnown RBP24.42■■□□□ 1.5
PRPF40A-212ENST00000545856 ABCC1P33527 1531 aa24.41■■□□□ 1.5
PRPF40A-212ENST00000545856 DNMT1P26358 1616 aaKnown RBP24.4■■□□□ 1.5
PRPF40A-212ENST00000545856 RSPH4AQ5TD94 716 aa24.39■■□□□ 1.49
PRPF40A-212ENST00000545856 CROCC2H7BZ55 1655 aa24.37■■□□□ 1.49
PRPF40A-212ENST00000545856 TSPOAP1O95153 1857 aa24.36■■□□□ 1.49
PRPF40A-212ENST00000545856 SHANK2Q9UPX8 1470 aa24.35■■□□□ 1.49
PRPF40A-212ENST00000545856 ADGRL1O94910 1474 aa24.34■■□□□ 1.49
PRPF40A-212ENST00000545856 AKNAQ7Z591 1439 aa24.34■■□□□ 1.49
PRPF40A-212ENST00000545856 SYCP2Q9BX26 1530 aa24.33■■□□□ 1.49
PRPF40A-212ENST00000545856 CCDC141Q6ZP82 1450 aa24.32■■□□□ 1.48
PRPF40A-212ENST00000545856 MBD5Q9P267 1494 aa24.32■■□□□ 1.48
PRPF40A-212ENST00000545856 MAST1Q9Y2H9 1570 aa24.3■■□□□ 1.48
PRPF40A-212ENST00000545856 FAM50AQ14320 339 aaKnown RBP24.29■■□□□ 1.48
PRPF40A-212ENST00000545856 ADGBQ8N7X0 1667 aa24.29■■□□□ 1.48
PRPF40A-212ENST00000545856 DAPK1P53355 1430 aa24.28■■□□□ 1.48
PRPF40A-212ENST00000545856 ZNF777Q9ULD5 760 aaPredicted RBP24.28■■□□□ 1.48
PRPF40A-212ENST00000545856 ZNF518AQ6AHZ1 1483 aa24.27■■□□□ 1.48
PRPF40A-212ENST00000545856 KDM5CP41229 1560 aa24.25■■□□□ 1.47
PRPF40A-212ENST00000545856 ZNF644Q9H582 1327 aaPredicted RBP24.24■■□□□ 1.47
PRPF40A-212ENST00000545856 POGZQ7Z3K3 1410 aa24.24■■□□□ 1.47
PRPF40A-212ENST00000545856 SCAPERQ9BY12 1400 aa24.24■■□□□ 1.47
PRPF40A-212ENST00000545856 RICTORQ6R327 1708 aa24.23■■□□□ 1.47
PRPF40A-212ENST00000545856 ARHGEF12Q9NZN5 1544 aa24.23■■□□□ 1.47
PRPF40A-212ENST00000545856 ABCC5O15440 1437 aa24.23■■□□□ 1.47
PRPF40A-212ENST00000545856 DENND4BO75064 1496 aaPredicted RBP24.23■■□□□ 1.47
PRPF40A-212ENST00000545856 ADGRL2O95490 1459 aa24.23■■□□□ 1.47
PRPF40A-212ENST00000545856 ROCK1Q13464 1354 aa24.22■■□□□ 1.47
PRPF40A-212ENST00000545856 TRHP20396 242 aaPredicted RBP24.21■■□□□ 1.47
PRPF40A-212ENST00000545856 RTEL1-TNFRSF6BF6WH68 1400 aa24.21■■□□□ 1.47
PRPF40A-212ENST00000545856 PLXNC1O60486 1568 aa24.2■■□□□ 1.46
PRPF40A-212ENST00000545856 ZMYM4Q5VZL5 1548 aa24.2■■□□□ 1.46
PRPF40A-212ENST00000545856 INO80Q9ULG1 1556 aaPredicted RBP24.19■■□□□ 1.46
PRPF40A-212ENST00000545856 TSPY4P0CV99 314 aa24.18■■□□□ 1.46
PRPF40A-212ENST00000545856 TSPY10P0CW01 314 aa24.18■■□□□ 1.46
PRPF40A-212ENST00000545856 C9orf84Q5VXU9 1444 aa24.18■■□□□ 1.46
PRPF40A-212ENST00000545856 HECW2Q9P2P5 1572 aa24.16■■□□□ 1.46
PRPF40A-212ENST00000545856 GCC2Q8IWJ2 1684 aa24.16■■□□□ 1.46
PRPF40A-212ENST00000545856 TRAPPC8Q9Y2L5 1435 aa24.16■■□□□ 1.46
PRPF40A-212ENST00000545856 MAGI2Q86UL8 1455 aa24.16■■□□□ 1.46
PRPF40A-212ENST00000545856 MLH3Q9UHC1 1453 aa24.16■■□□□ 1.46
PRPF40A-212ENST00000545856 ZFYVE16Q7Z3T8 1539 aa24.16■■□□□ 1.46
PRPF40A-212ENST00000545856 HNRNPMP52272 730 aaKnown RBP eCLIP24.15■■□□□ 1.462e-7■■■■■ 36.2
PRPF40A-212ENST00000545856 ATP7AQ04656 1500 aa24.13■■□□□ 1.45
PRPF40A-212ENST00000545856 FRMPD1Q5SYB0 1578 aa24.13■■□□□ 1.45
PRPF40A-212ENST00000545856 ACIN1Q9UKV3 1341 aaKnown RBP24.13■■□□□ 1.45
PRPF40A-212ENST00000545856 ANKRD30AQ9BXX3 1397 aa24.13■■□□□ 1.45
PRPF40A-212ENST00000545856 PTPRKQ15262 1439 aa24.13■■□□□ 1.45
PRPF40A-212ENST00000545856 HFM1A2PYH4 1435 aa24.12■■□□□ 1.45
PRPF40A-212ENST00000545856 KIDINS220Q9ULH0 1771 aa24.1■■□□□ 1.45
PRPF40A-212ENST00000545856 NCOA1Q15788 1441 aa24.09■■□□□ 1.45
PRPF40A-212ENST00000545856 SPAG9O60271 1321 aaKnown RBP24.09■■□□□ 1.45
PRPF40A-212ENST00000545856 KDM6BO15054 1643 aa24.09■■□□□ 1.45
PRPF40A-212ENST00000545856 PCGF6Q9BYE7 350 aa24.06■■□□□ 1.44
PRPF40A-212ENST00000545856 DUOX2Q9NRD8 1548 aa24.05■■□□□ 1.44
PRPF40A-212ENST00000545856 NAIPQ13075 1403 aa24.04■■□□□ 1.44
PRPF40A-212ENST00000545856 ITGAEP38570 1179 aa24.03■■□□□ 1.44
PRPF40A-212ENST00000545856 AFAP1Q8N556 730 aa24.03■■□□□ 1.44
PRPF40A-212ENST00000545856 REREQ9P2R6 1566 aa24.03■■□□□ 1.44
PRPF40A-212ENST00000545856 EIF2AK4Q9P2K8 1649 aaKnown RBP24.02■■□□□ 1.44
PRPF40A-212ENST00000545856 HRCP23327 699 aa24.02■■□□□ 1.44
PRPF40A-212ENST00000545856 KIF15Q9NS87 1388 aa24.01■■□□□ 1.43
PRPF40A-212ENST00000545856 ERBINQ96RT1 1412 aa24■■□□□ 1.43
PRPF40A-212ENST00000545856 SETD5Q9C0A6 1442 aa24■■□□□ 1.43
PRPF40A-212ENST00000545856 ARHGEF40Q8TER5 1519 aa24■■□□□ 1.43
PRPF40A-212ENST00000545856 COL17A1Q9UMD9 1497 aaPredicted RBP24■■□□□ 1.43
PRPF40A-212ENST00000545856 BCORL1Q5H9F3 1711 aa24■■□□□ 1.43
PRPF40A-212ENST00000545856 ABCA6Q8N139 1617 aa23.99■■□□□ 1.43
PRPF40A-212ENST00000545856 DIP2CQ9Y2E4 1556 aa23.98■■□□□ 1.43
PRPF40A-212ENST00000545856 RAPGEF3O95398 923 aa23.97■■□□□ 1.43
PRPF40A-212ENST00000545856 CHIC2Q9UKJ5 165 aa23.96■■□□□ 1.43
PRPF40A-212ENST00000545856 ANKRD50Q9ULJ7 1429 aa23.95■■□□□ 1.42
PRPF40A-212ENST00000545856 A2MP01023 1474 aa23.92■■□□□ 1.42
PRPF40A-212ENST00000545856 DHX29Q7Z478 1369 aaKnown RBP23.91■■□□□ 1.42
PRPF40A-212ENST00000545856 ATP10AO60312 1499 aa23.91■■□□□ 1.42
PRPF40A-212ENST00000545856 AGLP35573 1532 aa23.89■■□□□ 1.42
PRPF40A-212ENST00000545856 RRP7BPQ9NSQ0 103 aa23.89■■□□□ 1.41
PRPF40A-212ENST00000545856 RAB3GAP2Q9H2M9 1393 aa23.89■■□□□ 1.41
PRPF40A-212ENST00000545856 UNC13BO14795 1591 aa23.89■■□□□ 1.41
PRPF40A-212ENST00000545856 DEPDC5O75140 1603 aa23.89■■□□□ 1.41
PRPF40A-212ENST00000545856 MYT1LQ9UL68 1186 aa23.88■■□□□ 1.41
PRPF40A-212ENST00000545856 RNF17Q9BXT8 1623 aaKnown RBP23.87■■□□□ 1.41
PRPF40A-212ENST00000545856 YEATS2Q9ULM3 1422 aa23.86■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms