RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 TCOF1Q13428 1488 aaKnown RBP11.53□□□□□ -0.56
PDLIM5-221ENST00000542407 MIER1Q8N108 512 aa11.53□□□□□ -0.56
PDLIM5-221ENST00000542407 PTPN23Q9H3S7 1636 aa11.53□□□□□ -0.56
PDLIM5-221ENST00000542407 ZNF316A6NFI3 1004 aaPredicted RBP11.52□□□□□ -0.56
PDLIM5-221ENST00000542407 RAB3GAP2Q9H2M9 1393 aa11.51□□□□□ -0.57
PDLIM5-221ENST00000542407 PTPRKQ15262 1439 aa11.51□□□□□ -0.57
PDLIM5-221ENST00000542407 FAM50AQ14320 339 aaKnown RBP11.51□□□□□ -0.57
PDLIM5-221ENST00000542407 SETD5Q9C0A6 1442 aa11.5□□□□□ -0.57
PDLIM5-221ENST00000542407 ITGAEP38570 1179 aa11.5□□□□□ -0.57
PDLIM5-221ENST00000542407 ADCY10Q96PN6 1610 aa11.5□□□□□ -0.57
PDLIM5-221ENST00000542407 PRG4Q92954 1404 aaPredicted RBP11.5□□□□□ -0.57
PDLIM5-221ENST00000542407 CLASP1Q7Z460 1538 aa11.5□□□□□ -0.57
PDLIM5-221ENST00000542407 CLSPNQ9HAW4 1339 aa11.49□□□□□ -0.57
PDLIM5-221ENST00000542407 DNAJC5Q9H3Z4 198 aa11.48□□□□□ -0.57
PDLIM5-221ENST00000542407 MIA2Q96PC5 1412 aa11.48□□□□□ -0.57
PDLIM5-221ENST00000542407 MAPKBP1O60336 1514 aa11.47□□□□□ -0.57
PDLIM5-221ENST00000542407 ARID3CA6NKF2 412 aa11.47□□□□□ -0.57
PDLIM5-221ENST00000542407 TROQ12816 1431 aaPredicted RBP11.47□□□□□ -0.57
PDLIM5-221ENST00000542407 ERCC6L2Q5T890 1561 aa11.46□□□□□ -0.57
PDLIM5-221ENST00000542407 KIF14Q15058 1648 aa11.46□□□□□ -0.58
PDLIM5-221ENST00000542407 HFM1A2PYH4 1435 aa11.45□□□□□ -0.58
PDLIM5-221ENST00000542407 ATP10BO94823 1461 aa11.45□□□□□ -0.58
PDLIM5-221ENST00000542407 TSHZ2Q9NRE2 1034 aa11.43□□□□□ -0.58
PDLIM5-221ENST00000542407 PTPRGP23470 1445 aa11.42□□□□□ -0.58
PDLIM5-221ENST00000542407 NAIPQ13075 1403 aa11.42□□□□□ -0.58
PDLIM5-221ENST00000542407 TPRNQ4KMQ1 711 aa11.42□□□□□ -0.58
PDLIM5-221ENST00000542407 GCC2Q8IWJ2 1684 aa11.42□□□□□ -0.58
PDLIM5-221ENST00000542407 PDIA4P13667 645 aaKnown RBP11.42□□□□□ -0.58
PDLIM5-221ENST00000542407 PPP4R3CPQ6ZMV5 832 aa11.42□□□□□ -0.58
PDLIM5-221ENST00000542407 SUPT16HQ9Y5B9 1047 aaKnown RBP11.42□□□□□ -0.58
PDLIM5-221ENST00000542407 ITSN2Q9NZM3 1697 aa11.41□□□□□ -0.58
PDLIM5-221ENST00000542407 DNMT1P26358 1616 aaKnown RBP11.41□□□□□ -0.58
PDLIM5-221ENST00000542407 AKNAQ7Z591 1439 aa11.41□□□□□ -0.58
PDLIM5-221ENST00000542407 ABCC10Q5T3U5 1492 aa11.41□□□□□ -0.58
PDLIM5-221ENST00000542407 CDK11AQ9UQ88 783 aaPredicted RBP11.4□□□□□ -0.58
PDLIM5-221ENST00000542407 GPATCH8Q9UKJ3 1502 aaKnown RBP11.4□□□□□ -0.58
PDLIM5-221ENST00000542407 TULP1O00294 542 aaPredicted RBP11.4□□□□□ -0.59
PDLIM5-221ENST00000542407 FKBP8Q14318 412 aa11.39□□□□□ -0.59
PDLIM5-221ENST00000542407 UACAQ9BZF9 1416 aa11.39□□□□□ -0.59
PDLIM5-221ENST00000542407 SALL2Q9Y467 1007 aaPredicted RBP11.38□□□□□ -0.59
PDLIM5-221ENST00000542407 CDC42BPAQ5VT25 1732 aa11.38□□□□□ -0.59
PDLIM5-221ENST00000542407 ABCC2Q92887 1545 aa11.38□□□□□ -0.59
PDLIM5-221ENST00000542407 PLCB2Q00722 1185 aa11.38□□□□□ -0.59
PDLIM5-221ENST00000542407 DAPK1P53355 1430 aa11.38□□□□□ -0.59
PDLIM5-221ENST00000542407 CAMSAP2Q08AD1 1489 aa11.37□□□□□ -0.59
PDLIM5-221ENST00000542407 KDM6BO15054 1643 aa11.37□□□□□ -0.59
PDLIM5-221ENST00000542407 ABCC5O15440 1437 aa11.37□□□□□ -0.59
PDLIM5-221ENST00000542407 NEFLP07196 543 aa11.37□□□□□ -0.59
PDLIM5-221ENST00000542407 PDE4CQ08493 712 aa11.37□□□□□ -0.59
PDLIM5-221ENST00000542407 CROCC2H7BZ55 1655 aa11.36□□□□□ -0.59
PDLIM5-221ENST00000542407 ZNF644Q9H582 1327 aaPredicted RBP11.35□□□□□ -0.59
PDLIM5-221ENST00000542407 CCDC136Q96JN2 1154 aa11.35□□□□□ -0.59
PDLIM5-221ENST00000542407 ROCK1Q13464 1354 aa11.34□□□□□ -0.59
PDLIM5-221ENST00000542407 UHRF1BP1LA0JNW5 1464 aa11.34□□□□□ -0.59
PDLIM5-221ENST00000542407 PLEKHD1A6NEE1 506 aa11.32□□□□□ -0.6
PDLIM5-221ENST00000542407 DENND4BO75064 1496 aaPredicted RBP11.32□□□□□ -0.6
PDLIM5-221ENST00000542407 ADGBQ8N7X0 1667 aa11.32□□□□□ -0.6
PDLIM5-221ENST00000542407 PREX2Q70Z35 1606 aa11.32□□□□□ -0.6
PDLIM5-221ENST00000542407 HAP1P54257 671 aaPredicted RBP11.31□□□□□ -0.6
PDLIM5-221ENST00000542407 ZCCHC11Q5TAX3 1644 aaKnown RBP11.31□□□□□ -0.6
PDLIM5-221ENST00000542407 ADGRL2O95490 1459 aa11.31□□□□□ -0.6
PDLIM5-221ENST00000542407 CDC42BPBQ9Y5S2 1711 aa11.31□□□□□ -0.6
PDLIM5-221ENST00000542407 KDM5BQ9UGL1 1544 aa11.3□□□□□ -0.6
PDLIM5-221ENST00000542407 TTC37Q6PGP7 1564 aa11.3□□□□□ -0.6
PDLIM5-221ENST00000542407 CHIC2Q9UKJ5 165 aa11.3□□□□□ -0.6
PDLIM5-221ENST00000542407 BCANQ96GW7 911 aa11.3□□□□□ -0.6
PDLIM5-221ENST00000542407 RRP7BPQ9NSQ0 103 aa11.3□□□□□ -0.6
PDLIM5-221ENST00000542407 CFDP1Q9UEE9 299 aaPredicted RBP11.3□□□□□ -0.6
PDLIM5-221ENST00000542407 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.29□□□□□ -0.6
PDLIM5-221ENST00000542407 SAMD9LQ8IVG5 1584 aa11.28□□□□□ -0.6
PDLIM5-221ENST00000542407 SHANK2Q9UPX8 1470 aa11.28□□□□□ -0.6
PDLIM5-221ENST00000542407 ARHGEF5Q12774 1597 aa11.28□□□□□ -0.6
PDLIM5-221ENST00000542407 NCOA1Q15788 1441 aa11.27□□□□□ -0.61
PDLIM5-221ENST00000542407 SIN3AQ96ST3 1273 aa11.26□□□□□ -0.61
PDLIM5-221ENST00000542407 MBD5Q9P267 1494 aa11.26□□□□□ -0.61
PDLIM5-221ENST00000542407 MYO5CQ9NQX4 1742 aa11.24□□□□□ -0.61
PDLIM5-221ENST00000542407 ERICH6BQ5W0A0 696 aa11.23□□□□□ -0.61
PDLIM5-221ENST00000542407 HOMEZQ8IX15 550 aa11.22□□□□□ -0.61
PDLIM5-221ENST00000542407 ZNF777Q9ULD5 760 aaPredicted RBP11.22□□□□□ -0.61
PDLIM5-221ENST00000542407 C9orf84Q5VXU9 1444 aa11.22□□□□□ -0.61
PDLIM5-221ENST00000542407 SYCP2Q9BX26 1530 aa11.2□□□□□ -0.62
PDLIM5-221ENST00000542407 PZPP20742 1482 aa11.2□□□□□ -0.62
PDLIM5-221ENST00000542407 MAST1Q9Y2H9 1570 aa11.2□□□□□ -0.62
PDLIM5-221ENST00000542407 CCDC141Q6ZP82 1450 aa11.2□□□□□ -0.62
PDLIM5-221ENST00000542407 ARHGAP5Q13017 1502 aa11.2□□□□□ -0.62
PDLIM5-221ENST00000542407 ANKRD30AQ9BXX3 1397 aa11.19□□□□□ -0.62
PDLIM5-221ENST00000542407 FGD1P98174 961 aa11.19□□□□□ -0.62
PDLIM5-221ENST00000542407 BCL11BQ9C0K0 894 aaPredicted RBP11.19□□□□□ -0.62
PDLIM5-221ENST00000542407 PLCH2O75038 1416 aa11.19□□□□□ -0.62
PDLIM5-221ENST00000542407 MPHOSPH9Q99550 1183 aa11.18□□□□□ -0.62
PDLIM5-221ENST00000542407 KIAA1107Q9UPP5 1409 aa11.18□□□□□ -0.62
PDLIM5-221ENST00000542407 OSCARQ8IYS5 282 aa11.18□□□□□ -0.62
PDLIM5-221ENST00000542407 WDR7Q9Y4E6 1490 aa11.18□□□□□ -0.62
PDLIM5-221ENST00000542407 ARAP3Q8WWN8 1544 aa11.18□□□□□ -0.62
PDLIM5-221ENST00000542407 ARHGEF12Q9NZN5 1544 aa11.18□□□□□ -0.62
PDLIM5-221ENST00000542407 KDM5DQ9BY66 1539 aa11.17□□□□□ -0.62
PDLIM5-221ENST00000542407 HNRNPMP52272 730 aaKnown RBP eCLIP11.17□□□□□ -0.625e-6■■■□□ 18.5
PDLIM5-221ENST00000542407 ANKRD50Q9ULJ7 1429 aa11.17□□□□□ -0.62
PDLIM5-221ENST00000542407 ABCC1P33527 1531 aa11.16□□□□□ -0.62
PDLIM5-221ENST00000542407 PPP1R15AO75807 674 aaPredicted RBP11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms