RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 TMEM121BQ9BXQ6 578 aaPredicted RBP8.21□□□□□ -1.1
USP28-210ENST00000542033 PLCB2Q00722 1185 aa8.2□□□□□ -1.1
USP28-210ENST00000542033 CFAP44Q96MT7 982 aa8.2□□□□□ -1.1
USP28-210ENST00000542033 PPP1R37O75864 691 aa8.19□□□□□ -1.1
USP28-210ENST00000542033 SLAIN1Q8ND83 568 aa8.16□□□□□ -1.1
USP28-210ENST00000542033 SLC24A1O60721 1099 aa8.12□□□□□ -1.11
USP28-210ENST00000542033 TMC2Q8TDI7 906 aa8.12□□□□□ -1.11
USP28-210ENST00000542033 HAP1P54257 671 aaPredicted RBP8.11□□□□□ -1.11
USP28-210ENST00000542033 SNPHO15079 494 aa8.09□□□□□ -1.11
USP28-210ENST00000542033 PDE4AP27815 886 aa8.08□□□□□ -1.12
USP28-210ENST00000542033 C2orf72A6NCS6 295 aa8.06□□□□□ -1.12
USP28-210ENST00000542033 KIF3CO14782 793 aa8.06□□□□□ -1.12
USP28-210ENST00000542033 TMEM92Q6UXU6 159 aa8.06□□□□□ -1.12
USP28-210ENST00000542033 GPHNQ9NQX3 736 aaPredicted RBP8.06□□□□□ -1.12
USP28-210ENST00000542033 CDAN1Q8IWY9 1227 aa8.05□□□□□ -1.12
USP28-210ENST00000542033 CRISPLD2Q9H0B8 497 aa8.04□□□□□ -1.12
USP28-210ENST00000542033 DOK7Q18PE1 504 aa8.03□□□□□ -1.12
USP28-210ENST00000542033 RIMBP2O15034 1052 aa8.02□□□□□ -1.13
USP28-210ENST00000542033 FOXK1P85037 733 aa8.02□□□□□ -1.13
USP28-210ENST00000542033 NCKAP5LQ9HCH0 1330 aa8.02□□□□□ -1.13
USP28-210ENST00000542033 CADPS2Q86UW7 1296 aa8.01□□□□□ -1.13
USP28-210ENST00000542033 DDX27Q96GQ7 796 aaKnown RBP8.01□□□□□ -1.13
USP28-210ENST00000542033 LARP6Q9BRS8 491 aaKnown RBP8.01□□□□□ -1.13
USP28-210ENST00000542033 TSHZ2Q9NRE2 1034 aa8.01□□□□□ -1.13
USP28-210ENST00000542033 PPP1R15BQ5SWA1 713 aa8□□□□□ -1.13
USP28-210ENST00000542033 ST18O60284 1047 aa7.99□□□□□ -1.13
USP28-210ENST00000542033 DSG2Q14126 1118 aa7.99□□□□□ -1.13
USP28-210ENST00000542033 MFSD10Q14728 455 aa7.99□□□□□ -1.13
USP28-210ENST00000542033 PLPP6Q8IY26 295 aa7.99□□□□□ -1.13
USP28-210ENST00000542033 ZNF710Q8N1W2 664 aa7.99□□□□□ -1.13
USP28-210ENST00000542033 WDR70Q9NW82 654 aa7.99□□□□□ -1.13
USP28-210ENST00000542033 ZSWIM6Q9HCJ5 1215 aa7.97□□□□□ -1.13
USP28-210ENST00000542033 VSIG10Q8N0Z9 540 aa7.96□□□□□ -1.14
USP28-210ENST00000542033 SLC34A2O95436 690 aa7.95□□□□□ -1.14
USP28-210ENST00000542033 HOXB3P14651 431 aaPredicted RBP7.95□□□□□ -1.14
USP28-210ENST00000542033 TBC1D12O60347 775 aa7.93□□□□□ -1.14
USP28-210ENST00000542033 MMRN1Q13201 1228 aa7.9□□□□□ -1.14
USP28-210ENST00000542033 PTCD2Q8WV60 388 aaKnown RBP7.9□□□□□ -1.14
USP28-210ENST00000542033 ZNF316A6NFI3 1004 aaPredicted RBP7.89□□□□□ -1.15
USP28-210ENST00000542033 HOXB1P14653 301 aaPredicted RBP7.89□□□□□ -1.15
USP28-210ENST00000542033 E2F4Q16254 413 aa7.89□□□□□ -1.15
USP28-210ENST00000542033 KDM2AQ9Y2K7 1162 aa7.89□□□□□ -1.15
USP28-210ENST00000542033 PCDHGA4Q9Y5G9 962 aa7.89□□□□□ -1.15
USP28-210ENST00000542033 CAMK2BQ13554 666 aa7.88□□□□□ -1.15
USP28-210ENST00000542033 OXER1Q8TDS5 423 aa7.88□□□□□ -1.15
USP28-210ENST00000542033 ARSIQ5FYB1 569 aa7.87□□□□□ -1.15
USP28-210ENST00000542033 GPR153Q6NV75 609 aa7.87□□□□□ -1.15
USP28-210ENST00000542033 SPNS2Q8IVW8 549 aa7.87□□□□□ -1.15
USP28-210ENST00000542033 UPF1Q92900 1129 aaKnown RBP eCLIP7.87□□□□□ -1.15
USP28-210ENST00000542033 EMP3P54852 163 aa7.86□□□□□ -1.15
USP28-210ENST00000542033 MAP3K9P80192 1104 aa7.86□□□□□ -1.15
USP28-210ENST00000542033 P3H3Q8IVL6 736 aa7.86□□□□□ -1.15
USP28-210ENST00000542033 EMILIN3Q9NT22 766 aa7.84□□□□□ -1.15
USP28-210ENST00000542033 NUDT7P0C024 238 aa7.83□□□□□ -1.16
USP28-210ENST00000542033 MARVELD3Q96A59 401 aa7.83□□□□□ -1.16
USP28-210ENST00000542033 ERBB3P21860 1342 aa7.81□□□□□ -1.16
USP28-210ENST00000542033 PSDA5PKW4 1024 aaPredicted RBP7.81□□□□□ -1.16
USP28-210ENST00000542033 DPYSL4O14531 572 aa7.81□□□□□ -1.16
USP28-210ENST00000542033 KHSRPQ92945 711 aaKnown RBP eCLIP7.81□□□□□ -1.16
USP28-210ENST00000542033 ARIH1Q9Y4X5 557 aaPredicted RBP7.81□□□□□ -1.16
USP28-210ENST00000542033 EVI5O60447 810 aa7.8□□□□□ -1.16
USP28-210ENST00000542033 ARHGEF1Q92888 912 aaKnown RBP7.8□□□□□ -1.16
USP28-210ENST00000542033 FAM205CA6NFA0 338 aa7.79□□□□□ -1.16
USP28-210ENST00000542033 SPDYE16A6NNV3 312 aaPredicted RBP7.79□□□□□ -1.16
USP28-210ENST00000542033 KCNV2Q8TDN2 545 aa7.78□□□□□ -1.16
USP28-210ENST00000542033 PDIA6Q15084 440 aa7.77□□□□□ -1.17
USP28-210ENST00000542033 HS3ST6Q96QI5 342 aa7.77□□□□□ -1.17
USP28-210ENST00000542033 LHX6Q9UPM6 363 aa7.77□□□□□ -1.17
USP28-210ENST00000542033 KDM4FA0A1W2PPD8 638 aa7.76□□□□□ -1.17
USP28-210ENST00000542033 VARS2Q5ST30 1063 aaKnown RBP7.76□□□□□ -1.17
USP28-210ENST00000542033 ANO8Q9HCE9 1232 aaPredicted RBP7.76□□□□□ -1.17
USP28-210ENST00000542033 PPP4R3BQ5MIZ7 849 aa7.75□□□□□ -1.17
USP28-210ENST00000542033 JPH4Q96JJ6 628 aa7.74□□□□□ -1.17
USP28-210ENST00000542033 PTGER2P43116 358 aa7.72□□□□□ -1.17
USP28-210ENST00000542033 ZNF454Q8N9F8 522 aa7.72□□□□□ -1.17
USP28-210ENST00000542033 PHF14O94880 888 aa7.71□□□□□ -1.18
USP28-210ENST00000542033 FOSBP53539 338 aa7.71□□□□□ -1.18
USP28-210ENST00000542033 ZNF687Q8N1G0 1237 aa7.71□□□□□ -1.18
USP28-210ENST00000542033 PBX2P40425 430 aa7.7□□□□□ -1.18
USP28-210ENST00000542033 NBR1Q14596 966 aa7.7□□□□□ -1.18
USP28-210ENST00000542033 FBXW7Q969H0 707 aa7.7□□□□□ -1.18
USP28-210ENST00000542033 KCNH8Q96L42 1107 aa7.7□□□□□ -1.18
USP28-210ENST00000542033 EPAS1Q99814 870 aa7.7□□□□□ -1.18
USP28-210ENST00000542033 TYW1BQ6NUM6 668 aa7.69□□□□□ -1.18
USP28-210ENST00000542033 ZDHHC16Q969W1 377 aa7.69□□□□□ -1.18
USP28-210ENST00000542033 BCANQ96GW7 911 aa7.69□□□□□ -1.18
USP28-210ENST00000542033 POTEB3A0JP26 581 aa7.68□□□□□ -1.18
USP28-210ENST00000542033 POTEBQ6S5H4 581 aa7.68□□□□□ -1.18
USP28-210ENST00000542033 DDX12PQ92771 950 aa7.68□□□□□ -1.18
USP28-210ENST00000542033 KRTAP3-3Q9BYR6 98 aa7.67□□□□□ -1.18
USP28-210ENST00000542033 KRTAP3-2Q9BYR7 98 aa7.67□□□□□ -1.18
USP28-210ENST00000542033 BCL2L12Q9HB09 334 aa7.66□□□□□ -1.18
USP28-210ENST00000542033 PCDHGA10Q9Y5H3 936 aa7.66□□□□□ -1.18
USP28-210ENST00000542033 GRXCR2A6NFK2 248 aa7.65□□□□□ -1.18
USP28-210ENST00000542033 PTPREP23469 700 aa7.65□□□□□ -1.18
USP28-210ENST00000542033 SMYD5Q6GMV2 418 aa7.65□□□□□ -1.18
USP28-210ENST00000542033 ARHGAP33O14559 1287 aa7.64□□□□□ -1.19
USP28-210ENST00000542033 TULP1O00294 542 aaPredicted RBP7.63□□□□□ -1.19
USP28-210ENST00000542033 SEMA3EO15041 775 aa7.62□□□□□ -1.19
USP28-210ENST00000542033 EN1Q05925 392 aaPredicted RBP7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms