RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 POGZQ7Z3K3 1410 aa25.77■■□□□ 1.72
CLSTN3-213ENST00000541953 MYO5CQ9NQX4 1742 aa25.76■■□□□ 1.71
CLSTN3-213ENST00000541953 FMN1Q68DA7 1419 aa25.75■■□□□ 1.71
CLSTN3-213ENST00000541953 SCAPERQ9BY12 1400 aa25.75■■□□□ 1.71
CLSTN3-213ENST00000541953 ATP1B4Q9UN42 357 aaPredicted RBP25.74■■□□□ 1.71
CLSTN3-213ENST00000541953 MAGI2Q86UL8 1455 aa25.7■■□□□ 1.7
CLSTN3-213ENST00000541953 FER1L4A9Z1Z3 1794 aa25.69■■□□□ 1.7
CLSTN3-213ENST00000541953 PLPPR3Q6T4P5 718 aa25.69■■□□□ 1.7
CLSTN3-213ENST00000541953 TROQ12816 1431 aaPredicted RBP25.66■■□□□ 1.7
CLSTN3-213ENST00000541953 MLECQ14165 292 aa25.66■■□□□ 1.7
CLSTN3-213ENST00000541953 HSPA2P54652 639 aa25.64■■□□□ 1.7
CLSTN3-213ENST00000541953 CDC42BPBQ9Y5S2 1711 aa25.63■■□□□ 1.69
CLSTN3-213ENST00000541953 ARHGAP5Q13017 1502 aa25.62■■□□□ 1.69
CLSTN3-213ENST00000541953 ARHGEF12Q9NZN5 1544 aa25.62■■□□□ 1.69
CLSTN3-213ENST00000541953 KDM5CP41229 1560 aa25.61■■□□□ 1.69
CLSTN3-213ENST00000541953 ATP10AO60312 1499 aa25.6■■□□□ 1.69
CLSTN3-213ENST00000541953 EFCAB2Q5VUJ9 269 aa25.6■■□□□ 1.69
CLSTN3-213ENST00000541953 C9orf84Q5VXU9 1444 aa25.6■■□□□ 1.69
CLSTN3-213ENST00000541953 DIP2CQ9Y2E4 1556 aa25.56■■□□□ 1.68
CLSTN3-213ENST00000541953 ZNF518AQ6AHZ1 1483 aa25.56■■□□□ 1.68
CLSTN3-213ENST00000541953 AFAP1Q8N556 730 aa25.56■■□□□ 1.68
CLSTN3-213ENST00000541953 FBXO41Q8TF61 875 aa25.56■■□□□ 1.68
CLSTN3-213ENST00000541953 PREX2Q70Z35 1606 aa25.55■■□□□ 1.68
CLSTN3-213ENST00000541953 CDK11AQ9UQ88 783 aaPredicted RBP25.55■■□□□ 1.68
CLSTN3-213ENST00000541953 ABCA6Q8N139 1617 aa25.55■■□□□ 1.68
CLSTN3-213ENST00000541953 CLIP1P30622 1438 aa25.54■■□□□ 1.68
CLSTN3-213ENST00000541953 CASKIN1Q8WXD9 1431 aa25.53■■□□□ 1.68
CLSTN3-213ENST00000541953 ABCC1P33527 1531 aa25.52■■□□□ 1.68
CLSTN3-213ENST00000541953 ITSN2Q9NZM3 1697 aa25.5■■□□□ 1.67
CLSTN3-213ENST00000541953 CDC42BPAQ5VT25 1732 aa25.49■■□□□ 1.67
CLSTN3-213ENST00000541953 TRAPPC8Q9Y2L5 1435 aa25.49■■□□□ 1.67
CLSTN3-213ENST00000541953 CEBPAP49715 358 aaPredicted RBP25.49■■□□□ 1.67
CLSTN3-213ENST00000541953 PREX1Q8TCU6 1659 aa25.48■■□□□ 1.67
CLSTN3-213ENST00000541953 CCDC18Q5T9S5 1454 aa25.47■■□□□ 1.67
CLSTN3-213ENST00000541953 REREQ9P2R6 1566 aa25.45■■□□□ 1.66
CLSTN3-213ENST00000541953 MLH3Q9UHC1 1453 aa25.43■■□□□ 1.66
CLSTN3-213ENST00000541953 KIDINS220Q9ULH0 1771 aa25.43■■□□□ 1.66
CLSTN3-213ENST00000541953 FYCO1Q9BQS8 1478 aa25.41■■□□□ 1.66
CLSTN3-213ENST00000541953 SAMD9LQ8IVG5 1584 aa25.39■■□□□ 1.66
CLSTN3-213ENST00000541953 C3P01024 1663 aa25.39■■□□□ 1.66
CLSTN3-213ENST00000541953 STRCQ7RTU9 1775 aa25.39■■□□□ 1.66
CLSTN3-213ENST00000541953 MYT1LQ9UL68 1186 aa25.37■■□□□ 1.65
CLSTN3-213ENST00000541953 AGLP35573 1532 aa25.35■■□□□ 1.65
CLSTN3-213ENST00000541953 SYCP2Q9BX26 1530 aa25.34■■□□□ 1.65
CLSTN3-213ENST00000541953 GPATCH8Q9UKJ3 1502 aaKnown RBP25.32■■□□□ 1.64
CLSTN3-213ENST00000541953 UHRF1BP1Q6BDS2 1440 aa25.29■■□□□ 1.64
CLSTN3-213ENST00000541953 CERKQ8TCT0 537 aa25.28■■□□□ 1.64
CLSTN3-213ENST00000541953 ZNF777Q9ULD5 760 aaPredicted RBP25.27■■□□□ 1.64
CLSTN3-213ENST00000541953 SETD1BQ9UPS6 1966 aaKnown RBP25.25■■□□□ 1.63
CLSTN3-213ENST00000541953 INO80Q9ULG1 1556 aaPredicted RBP25.24■■□□□ 1.63
CLSTN3-213ENST00000541953 SUPT6HQ7KZ85 1726 aaKnown RBP25.23■■□□□ 1.63
CLSTN3-213ENST00000541953 HNRNPMP52272 730 aaKnown RBP eCLIP25.23■■□□□ 1.63
CLSTN3-213ENST00000541953 ATP7AQ04656 1500 aa25.22■■□□□ 1.63
CLSTN3-213ENST00000541953 PLXNC1O60486 1568 aa25.21■■□□□ 1.63
CLSTN3-213ENST00000541953 TIAM1Q13009 1591 aa25.18■■□□□ 1.62
CLSTN3-213ENST00000541953 SPAG9O60271 1321 aaKnown RBP25.17■■□□□ 1.62
CLSTN3-213ENST00000541953 MROH2AA6NES4 1674 aa25.17■■□□□ 1.62
CLSTN3-213ENST00000541953 CLTCQ00610 1675 aaKnown RBP25.16■■□□□ 1.62
CLSTN3-213ENST00000541953 CNTLNQ9NXG0 1405 aa25.15■■□□□ 1.62
CLSTN3-213ENST00000541953 KIAA1107Q9UPP5 1409 aa25.15■■□□□ 1.62
CLSTN3-213ENST00000541953 CCNB3Q8WWL7 1395 aa25.14■■□□□ 1.61
CLSTN3-213ENST00000541953 ZNF644Q9H582 1327 aaPredicted RBP25.13■■□□□ 1.61
CLSTN3-213ENST00000541953 CFDP1Q9UEE9 299 aaPredicted RBP25.13■■□□□ 1.61
CLSTN3-213ENST00000541953 ESF1Q9H501 851 aaKnown RBP25.12■■□□□ 1.61
CLSTN3-213ENST00000541953 MTUS2Q5JR59 1369 aa25.12■■□□□ 1.61
CLSTN3-213ENST00000541953 NCOA1Q15788 1441 aa25.12■■□□□ 1.61
CLSTN3-213ENST00000541953 A2MP01023 1474 aa25.11■■□□□ 1.61
CLSTN3-213ENST00000541953 PTPRTO14522 1441 aa25.11■■□□□ 1.61
CLSTN3-213ENST00000541953 PLEKHH2Q8IVE3 1493 aa25.1■■□□□ 1.61
CLSTN3-213ENST00000541953 EHBP1L1Q8N3D4 1523 aa25.1■■□□□ 1.61
CLSTN3-213ENST00000541953 ZMYM3Q14202 1370 aa25.09■■□□□ 1.61
CLSTN3-213ENST00000541953 LTBP4Q8N2S1 1624 aa25.09■■□□□ 1.61
CLSTN3-213ENST00000541953 MBD5Q9P267 1494 aa25.09■■□□□ 1.61
CLSTN3-213ENST00000541953 CAMSAP1Q5T5Y3 1602 aa25.08■■□□□ 1.61
CLSTN3-213ENST00000541953 MYO3AQ8NEV4 1616 aa25.08■■□□□ 1.6
CLSTN3-213ENST00000541953 NPATQ14207 1427 aa25.07■■□□□ 1.6
CLSTN3-213ENST00000541953 DMRT2Q9Y5R5 561 aa25.06■■□□□ 1.6
CLSTN3-213ENST00000541953 ADGBQ8N7X0 1667 aa25.06■■□□□ 1.6
CLSTN3-213ENST00000541953 CEP162Q5TB80 1403 aa25.05■■□□□ 1.6
CLSTN3-213ENST00000541953 ZNF142P52746 1687 aaPredicted RBP25.04■■□□□ 1.6
CLSTN3-213ENST00000541953 PTPRKQ15262 1439 aa25.03■■□□□ 1.6
CLSTN3-213ENST00000541953 CEP170BQ9Y4F5 1589 aaPredicted RBP25■■□□□ 1.59
CLSTN3-213ENST00000541953 GGT6Q6P531 493 aa24.99■■□□□ 1.59
CLSTN3-213ENST00000541953 NCKAP5LQ9HCH0 1330 aa24.97■■□□□ 1.59
CLSTN3-213ENST00000541953 NCOA2Q15596 1464 aa24.96■■□□□ 1.59
CLSTN3-213ENST00000541953 CAMSAP2Q08AD1 1489 aa24.95■■□□□ 1.58
CLSTN3-213ENST00000541953 RTEL1-TNFRSF6BF6WH68 1400 aa24.92■■□□□ 1.58
CLSTN3-213ENST00000541953 TCOF1Q13428 1488 aaKnown RBP24.91■■□□□ 1.58
CLSTN3-213ENST00000541953 CCDC141Q6ZP82 1450 aa24.91■■□□□ 1.58
CLSTN3-213ENST00000541953 PLA2R1Q13018 1463 aa24.9■■□□□ 1.58
CLSTN3-213ENST00000541953 DHX29Q7Z478 1369 aaKnown RBP24.9■■□□□ 1.58
CLSTN3-213ENST00000541953 ZNF335Q9H4Z2 1342 aaPredicted RBP24.89■■□□□ 1.58
CLSTN3-213ENST00000541953 DNMT1P26358 1616 aaKnown RBP24.88■■□□□ 1.57
CLSTN3-213ENST00000541953 IQSEC2Q5JU85 1478 aa24.86■■□□□ 1.57
CLSTN3-213ENST00000541953 A2ML1A8K2U0 1454 aa24.84■■□□□ 1.57
CLSTN3-213ENST00000541953 ILDR2Q71H61 639 aa24.84■■□□□ 1.57
CLSTN3-213ENST00000541953 ARHGEF5Q12774 1597 aa24.84■■□□□ 1.57
CLSTN3-213ENST00000541953 KDM5DQ9BY66 1539 aa24.83■■□□□ 1.57
CLSTN3-213ENST00000541953 FBXO31Q5XUX0 539 aaPredicted RBP24.83■■□□□ 1.57
CLSTN3-213ENST00000541953 DISP3Q9P2K9 1392 aa24.82■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms