RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 AKNAQ7Z591 1439 aa29.29■■■□□ 2.28
VPS33A-205ENST00000541169 CDC42BPAQ5VT25 1732 aa29.29■■■□□ 2.28
VPS33A-205ENST00000541169 ITSN2Q9NZM3 1697 aa29.28■■■□□ 2.28
VPS33A-205ENST00000541169 GPATCH8Q9UKJ3 1502 aaKnown RBP29.28■■■□□ 2.28
VPS33A-205ENST00000541169 NCOA2Q15596 1464 aa29.28■■■□□ 2.28
VPS33A-205ENST00000541169 CDC42BPBQ9Y5S2 1711 aa29.28■■■□□ 2.28
VPS33A-205ENST00000541169 KANK4Q5T7N3 995 aaPredicted RBP29.25■■■□□ 2.27
VPS33A-205ENST00000541169 CFDP1Q9UEE9 299 aaPredicted RBP29.23■■■□□ 2.27
VPS33A-205ENST00000541169 ADGRL1O94910 1474 aa29.22■■■□□ 2.27
VPS33A-205ENST00000541169 DENND4BO75064 1496 aaPredicted RBP29.2■■■□□ 2.26
VPS33A-205ENST00000541169 PLEKHH2Q8IVE3 1493 aa29.19■■■□□ 2.26
VPS33A-205ENST00000541169 COL17A1Q9UMD9 1497 aaPredicted RBP29.19■■■□□ 2.26
VPS33A-205ENST00000541169 SCAPERQ9BY12 1400 aa29.15■■■□□ 2.26
VPS33A-205ENST00000541169 KIAA1107Q9UPP5 1409 aa29.13■■■□□ 2.25
VPS33A-205ENST00000541169 MIA2Q96PC5 1412 aa29.12■■■□□ 2.25
VPS33A-205ENST00000541169 ABCC1P33527 1531 aa29.12■■■□□ 2.25
VPS33A-205ENST00000541169 MYOM3Q5VTT5 1437 aa29.11■■■□□ 2.25
VPS33A-205ENST00000541169 POGZQ7Z3K3 1410 aa29.11■■■□□ 2.25
VPS33A-205ENST00000541169 ZNF518AQ6AHZ1 1483 aa29.1■■■□□ 2.25
VPS33A-205ENST00000541169 RICTORQ6R327 1708 aa29.1■■■□□ 2.25
VPS33A-205ENST00000541169 SAMD9LQ8IVG5 1584 aa29.09■■■□□ 2.25
VPS33A-205ENST00000541169 ZNF777Q9ULD5 760 aaPredicted RBP29.08■■■□□ 2.25
VPS33A-205ENST00000541169 RAPGEF3O95398 923 aa29.07■■■□□ 2.24
VPS33A-205ENST00000541169 MAGI2Q86UL8 1455 aa29.07■■■□□ 2.24
VPS33A-205ENST00000541169 ZMYM4Q5VZL5 1548 aa29.06■■■□□ 2.24
VPS33A-205ENST00000541169 RSPH4AQ5TD94 716 aa29.05■■■□□ 2.24
VPS33A-205ENST00000541169 FRMPD1Q5SYB0 1578 aa29.05■■■□□ 2.24
VPS33A-205ENST00000541169 KDM5CP41229 1560 aa29.01■■■□□ 2.23
VPS33A-205ENST00000541169 SYCP2Q9BX26 1530 aa28.99■■■□□ 2.23
VPS33A-205ENST00000541169 CAMSAP2Q08AD1 1489 aa28.98■■■□□ 2.23
VPS33A-205ENST00000541169 ARHGEF12Q9NZN5 1544 aa28.98■■■□□ 2.23
VPS33A-205ENST00000541169 FGD6Q6ZV73 1430 aa28.95■■■□□ 2.23
VPS33A-205ENST00000541169 AFAP1Q8N556 730 aa28.95■■■□□ 2.22
VPS33A-205ENST00000541169 MLH3Q9UHC1 1453 aa28.95■■■□□ 2.22
VPS33A-205ENST00000541169 HNRNPMP52272 730 aaKnown RBP eCLIP28.94■■■□□ 2.22
VPS33A-205ENST00000541169 TRAPPC8Q9Y2L5 1435 aa28.94■■■□□ 2.22
VPS33A-205ENST00000541169 ZNF644Q9H582 1327 aaPredicted RBP28.94■■■□□ 2.22
VPS33A-205ENST00000541169 MBD5Q9P267 1494 aa28.93■■■□□ 2.22
VPS33A-205ENST00000541169 ZFYVE16Q7Z3T8 1539 aa28.93■■■□□ 2.22
VPS33A-205ENST00000541169 ARHGEF5Q12774 1597 aa28.92■■■□□ 2.22
VPS33A-205ENST00000541169 HECW2Q9P2P5 1572 aa28.92■■■□□ 2.22
VPS33A-205ENST00000541169 ARHGEF40Q8TER5 1519 aa28.91■■■□□ 2.22
VPS33A-205ENST00000541169 PTPN23Q9H3S7 1636 aa28.91■■■□□ 2.22
VPS33A-205ENST00000541169 TCOF1Q13428 1488 aaKnown RBP28.9■■■□□ 2.22
VPS33A-205ENST00000541169 CCDC141Q6ZP82 1450 aa28.89■■■□□ 2.22
VPS33A-205ENST00000541169 SPAG9O60271 1321 aaKnown RBP28.88■■■□□ 2.21
VPS33A-205ENST00000541169 RTEL1-TNFRSF6BF6WH68 1400 aa28.86■■■□□ 2.21
VPS33A-205ENST00000541169 TSPY4P0CV99 314 aa28.85■■■□□ 2.21
VPS33A-205ENST00000541169 TSPY10P0CW01 314 aa28.85■■■□□ 2.21
VPS33A-205ENST00000541169 MYT1LQ9UL68 1186 aa28.85■■■□□ 2.21
VPS33A-205ENST00000541169 ATP10AO60312 1499 aa28.83■■■□□ 2.21
VPS33A-205ENST00000541169 INO80Q9ULG1 1556 aaPredicted RBP28.81■■■□□ 2.2
VPS33A-205ENST00000541169 ATP7AQ04656 1500 aa28.81■■■□□ 2.2
VPS33A-205ENST00000541169 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.8■■■□□ 2.2
VPS33A-205ENST00000541169 KIDINS220Q9ULH0 1771 aa28.8■■■□□ 2.2
VPS33A-205ENST00000541169 YEATS2Q9ULM3 1422 aa28.79■■■□□ 2.2
VPS33A-205ENST00000541169 REREQ9P2R6 1566 aa28.79■■■□□ 2.2
VPS33A-205ENST00000541169 C9orf84Q5VXU9 1444 aa28.78■■■□□ 2.2
VPS33A-205ENST00000541169 PPARGC1BQ86YN6 1023 aaKnown RBP28.78■■■□□ 2.2
VPS33A-205ENST00000541169 MAST1Q9Y2H9 1570 aa28.76■■■□□ 2.19
VPS33A-205ENST00000541169 DNMT1P26358 1616 aaKnown RBP28.76■■■□□ 2.19
VPS33A-205ENST00000541169 DIP2CQ9Y2E4 1556 aa28.75■■■□□ 2.19
VPS33A-205ENST00000541169 SHANK2Q9UPX8 1470 aa28.75■■■□□ 2.19
VPS33A-205ENST00000541169 ABCA6Q8N139 1617 aa28.73■■■□□ 2.19
VPS33A-205ENST00000541169 FAM50AQ14320 339 aaKnown RBP28.73■■■□□ 2.19
VPS33A-205ENST00000541169 ADGBQ8N7X0 1667 aa28.72■■■□□ 2.19
VPS33A-205ENST00000541169 DAPK1P53355 1430 aa28.71■■■□□ 2.19
VPS33A-205ENST00000541169 CROCC2H7BZ55 1655 aa28.7■■■□□ 2.19
VPS33A-205ENST00000541169 RRBP1Q9P2E9 1410 aaKnown RBP28.7■■■□□ 2.19
VPS33A-205ENST00000541169 ABCC5O15440 1437 aa28.69■■■□□ 2.18
VPS33A-205ENST00000541169 AGLP35573 1532 aa28.68■■■□□ 2.18
VPS33A-205ENST00000541169 ARID4BQ4LE39 1312 aaPredicted RBP28.68■■■□□ 2.18
VPS33A-205ENST00000541169 PLXNC1O60486 1568 aa28.66■■■□□ 2.18
VPS33A-205ENST00000541169 A2MP01023 1474 aa28.65■■■□□ 2.18
VPS33A-205ENST00000541169 DHX29Q7Z478 1369 aaKnown RBP28.61■■■□□ 2.17
VPS33A-205ENST00000541169 ANKRD30AQ9BXX3 1397 aa28.61■■■□□ 2.17
VPS33A-205ENST00000541169 BCORL1Q5H9F3 1711 aa28.59■■■□□ 2.17
VPS33A-205ENST00000541169 ADGRL2O95490 1459 aa28.57■■■□□ 2.16
VPS33A-205ENST00000541169 DUOX2Q9NRD8 1548 aa28.55■■■□□ 2.16
VPS33A-205ENST00000541169 ROCK1Q13464 1354 aa28.53■■■□□ 2.16
VPS33A-205ENST00000541169 SIGLEC1Q9BZZ2 1709 aa28.53■■■□□ 2.16
VPS33A-205ENST00000541169 PPP6R1Q9UPN7 881 aa28.53■■■□□ 2.16
VPS33A-205ENST00000541169 NCOA1Q15788 1441 aa28.52■■■□□ 2.16
VPS33A-205ENST00000541169 ADAMTSL3P82987 1691 aa28.52■■■□□ 2.16
VPS33A-205ENST00000541169 KIF15Q9NS87 1388 aa28.51■■■□□ 2.16
VPS33A-205ENST00000541169 EIF2AK4Q9P2K8 1649 aaKnown RBP28.51■■■□□ 2.15
VPS33A-205ENST00000541169 KDM4FA0A1W2PPD8 638 aa28.49■■■□□ 2.15
VPS33A-205ENST00000541169 ERBINQ96RT1 1412 aa28.49■■■□□ 2.15
VPS33A-205ENST00000541169 CHIC2Q9UKJ5 165 aa28.48■■■□□ 2.15
VPS33A-205ENST00000541169 RRP7BPQ9NSQ0 103 aa28.46■■■□□ 2.15
VPS33A-205ENST00000541169 FAM135AQ9P2D6 1515 aa28.45■■■□□ 2.15
VPS33A-205ENST00000541169 ESF1Q9H501 851 aaKnown RBP28.44■■■□□ 2.14
VPS33A-205ENST00000541169 KIF3BO15066 747 aa28.43■■■□□ 2.14
VPS33A-205ENST00000541169 PTPRKQ15262 1439 aa28.43■■■□□ 2.14
VPS33A-205ENST00000541169 CNTLNQ9NXG0 1405 aa28.43■■■□□ 2.14
VPS33A-205ENST00000541169 MLECQ14165 292 aa28.42■■■□□ 2.14
VPS33A-205ENST00000541169 FER1L4A9Z1Z3 1794 aa28.42■■■□□ 2.14
VPS33A-205ENST00000541169 MADDQ8WXG6 1647 aa28.4■■■□□ 2.14
VPS33A-205ENST00000541169 ITGAEP38570 1179 aa28.4■■■□□ 2.14
VPS33A-205ENST00000541169 RNF17Q9BXT8 1623 aaKnown RBP28.38■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms