RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 NEO1Q92859 1461 aa27.17■■□□□ 1.94
CLSTN3-210ENST00000540931 TTC37Q6PGP7 1564 aa27.17■■□□□ 1.94
CLSTN3-210ENST00000540931 KANK4Q5T7N3 995 aaPredicted RBP27.14■■□□□ 1.94
CLSTN3-210ENST00000540931 NCOA2Q15596 1464 aa27.13■■□□□ 1.93
CLSTN3-210ENST00000540931 HECW2Q9P2P5 1572 aa27.13■■□□□ 1.93
CLSTN3-210ENST00000540931 FANCAO15360 1455 aa27.1■■□□□ 1.93
CLSTN3-210ENST00000540931 ITSN2Q9NZM3 1697 aa27.1■■□□□ 1.93
CLSTN3-210ENST00000540931 PREX2Q70Z35 1606 aa27.08■■□□□ 1.93
CLSTN3-210ENST00000540931 ARHGAP5Q13017 1502 aa27.08■■□□□ 1.93
CLSTN3-210ENST00000540931 GPATCH8Q9UKJ3 1502 aaKnown RBP27.08■■□□□ 1.93
CLSTN3-210ENST00000540931 CFDP1Q9UEE9 299 aaPredicted RBP27.08■■□□□ 1.93
CLSTN3-210ENST00000540931 AKNAQ7Z591 1439 aa27.04■■□□□ 1.92
CLSTN3-210ENST00000540931 PLEKHH2Q8IVE3 1493 aa27.04■■□□□ 1.92
CLSTN3-210ENST00000540931 CDC42BPAQ5VT25 1732 aa27.04■■□□□ 1.92
CLSTN3-210ENST00000540931 MIA2Q96PC5 1412 aa27.03■■□□□ 1.92
CLSTN3-210ENST00000540931 MYOM3Q5VTT5 1437 aa27.01■■□□□ 1.91
CLSTN3-210ENST00000540931 CDC42BPBQ9Y5S2 1711 aa27.01■■□□□ 1.91
CLSTN3-210ENST00000540931 RSPH4AQ5TD94 716 aa26.97■■□□□ 1.91
CLSTN3-210ENST00000540931 KIAA1107Q9UPP5 1409 aa26.97■■□□□ 1.91
CLSTN3-210ENST00000540931 DENND4BO75064 1496 aaPredicted RBP26.94■■□□□ 1.9
CLSTN3-210ENST00000540931 SCAPERQ9BY12 1400 aa26.92■■□□□ 1.9
CLSTN3-210ENST00000540931 ZNF777Q9ULD5 760 aaPredicted RBP26.92■■□□□ 1.9
CLSTN3-210ENST00000540931 ZNF518AQ6AHZ1 1483 aa26.88■■□□□ 1.89
CLSTN3-210ENST00000540931 ABCC1P33527 1531 aa26.88■■□□□ 1.89
CLSTN3-210ENST00000540931 FGD6Q6ZV73 1430 aa26.87■■□□□ 1.89
CLSTN3-210ENST00000540931 SAMD9LQ8IVG5 1584 aa26.85■■□□□ 1.89
CLSTN3-210ENST00000540931 POGZQ7Z3K3 1410 aa26.84■■□□□ 1.89
CLSTN3-210ENST00000540931 MAGI2Q86UL8 1455 aa26.83■■□□□ 1.89
CLSTN3-210ENST00000540931 CAMSAP2Q08AD1 1489 aa26.82■■□□□ 1.88
CLSTN3-210ENST00000540931 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.8■■□□□ 1.88
CLSTN3-210ENST00000540931 TCOF1Q13428 1488 aaKnown RBP26.8■■□□□ 1.88
CLSTN3-210ENST00000540931 RAPGEF3O95398 923 aa26.79■■□□□ 1.88
CLSTN3-210ENST00000540931 PTPN23Q9H3S7 1636 aa26.79■■□□□ 1.88
CLSTN3-210ENST00000540931 SYCP2Q9BX26 1530 aa26.78■■□□□ 1.88
CLSTN3-210ENST00000540931 RICTORQ6R327 1708 aa26.77■■□□□ 1.88
CLSTN3-210ENST00000540931 ARHGEF5Q12774 1597 aa26.77■■□□□ 1.88
CLSTN3-210ENST00000540931 ZMYM4Q5VZL5 1548 aa26.77■■□□□ 1.88
CLSTN3-210ENST00000540931 TSPY4P0CV99 314 aa26.77■■□□□ 1.88
CLSTN3-210ENST00000540931 TSPY10P0CW01 314 aa26.77■■□□□ 1.88
CLSTN3-210ENST00000540931 HNRNPMP52272 730 aaKnown RBP eCLIP26.77■■□□□ 1.88
CLSTN3-210ENST00000540931 PPARGC1BQ86YN6 1023 aaKnown RBP26.77■■□□□ 1.88
CLSTN3-210ENST00000540931 ADAMTSL3P82987 1691 aa26.76■■□□□ 1.87
CLSTN3-210ENST00000540931 PTPRMP28827 1452 aa26.76■■□□□ 1.87
CLSTN3-210ENST00000540931 MBD5Q9P267 1494 aa26.75■■□□□ 1.87
CLSTN3-210ENST00000540931 ZNF644Q9H582 1327 aaPredicted RBP26.75■■□□□ 1.87
CLSTN3-210ENST00000540931 KDM5CP41229 1560 aa26.75■■□□□ 1.87
CLSTN3-210ENST00000540931 CCDC141Q6ZP82 1450 aa26.74■■□□□ 1.87
CLSTN3-210ENST00000540931 ARHGEF12Q9NZN5 1544 aa26.73■■□□□ 1.87
CLSTN3-210ENST00000540931 MLH3Q9UHC1 1453 aa26.73■■□□□ 1.87
CLSTN3-210ENST00000540931 AFAP1Q8N556 730 aa26.72■■□□□ 1.87
CLSTN3-210ENST00000540931 TRAPPC8Q9Y2L5 1435 aa26.72■■□□□ 1.87
CLSTN3-210ENST00000540931 SPAG9O60271 1321 aaKnown RBP26.71■■□□□ 1.87
CLSTN3-210ENST00000540931 RTEL1-TNFRSF6BF6WH68 1400 aa26.71■■□□□ 1.87
CLSTN3-210ENST00000540931 RRBP1Q9P2E9 1410 aaKnown RBP26.71■■□□□ 1.87
CLSTN3-210ENST00000540931 FAM50AQ14320 339 aaKnown RBP26.7■■□□□ 1.86
CLSTN3-210ENST00000540931 FRMPD1Q5SYB0 1578 aa26.7■■□□□ 1.86
CLSTN3-210ENST00000540931 FBXO41Q8TF61 875 aa26.69■■□□□ 1.86
CLSTN3-210ENST00000540931 MYT1LQ9UL68 1186 aa26.69■■□□□ 1.86
CLSTN3-210ENST00000540931 SHANK2Q9UPX8 1470 aa26.65■■□□□ 1.86
CLSTN3-210ENST00000540931 BCORL1Q5H9F3 1711 aa26.65■■□□□ 1.86
CLSTN3-210ENST00000540931 ZFYVE16Q7Z3T8 1539 aa26.65■■□□□ 1.86
CLSTN3-210ENST00000540931 DNMT1P26358 1616 aaKnown RBP26.63■■□□□ 1.85
CLSTN3-210ENST00000540931 ARID4BQ4LE39 1312 aaPredicted RBP26.62■■□□□ 1.85
CLSTN3-210ENST00000540931 DAPK1P53355 1430 aa26.61■■□□□ 1.85
CLSTN3-210ENST00000540931 MAST1Q9Y2H9 1570 aa26.61■■□□□ 1.85
CLSTN3-210ENST00000540931 ATP7AQ04656 1500 aa26.6■■□□□ 1.85
CLSTN3-210ENST00000540931 ARHGEF40Q8TER5 1519 aa26.6■■□□□ 1.85
CLSTN3-210ENST00000540931 MADDQ8WXG6 1647 aa26.59■■□□□ 1.85
CLSTN3-210ENST00000540931 ATP10AO60312 1499 aa26.59■■□□□ 1.85
CLSTN3-210ENST00000540931 ABCC5O15440 1437 aa26.58■■□□□ 1.85
CLSTN3-210ENST00000540931 INO80Q9ULG1 1556 aaPredicted RBP26.58■■□□□ 1.85
CLSTN3-210ENST00000540931 C9orf84Q5VXU9 1444 aa26.57■■□□□ 1.84
CLSTN3-210ENST00000540931 LMTK3Q96Q04 1460 aa26.55■■□□□ 1.84
CLSTN3-210ENST00000540931 KIDINS220Q9ULH0 1771 aa26.55■■□□□ 1.84
CLSTN3-210ENST00000540931 ANKRD30AQ9BXX3 1397 aa26.55■■□□□ 1.84
CLSTN3-210ENST00000540931 REREQ9P2R6 1566 aa26.54■■□□□ 1.84
CLSTN3-210ENST00000540931 CROCC2H7BZ55 1655 aa26.54■■□□□ 1.84
CLSTN3-210ENST00000540931 ADGBQ8N7X0 1667 aa26.51■■□□□ 1.83
CLSTN3-210ENST00000540931 YEATS2Q9ULM3 1422 aa26.51■■□□□ 1.83
CLSTN3-210ENST00000540931 PLXNC1O60486 1568 aa26.5■■□□□ 1.83
CLSTN3-210ENST00000540931 ROCK1Q13464 1354 aa26.5■■□□□ 1.83
CLSTN3-210ENST00000540931 DIP2CQ9Y2E4 1556 aa26.5■■□□□ 1.83
CLSTN3-210ENST00000540931 ADGRL2O95490 1459 aa26.49■■□□□ 1.83
CLSTN3-210ENST00000540931 A2MP01023 1474 aa26.47■■□□□ 1.83
CLSTN3-210ENST00000540931 RIMS1Q86UR5 1692 aaKnown RBP26.47■■□□□ 1.83
CLSTN3-210ENST00000540931 ABCA6Q8N139 1617 aa26.47■■□□□ 1.83
CLSTN3-210ENST00000540931 DHX29Q7Z478 1369 aaKnown RBP26.46■■□□□ 1.83
CLSTN3-210ENST00000540931 AGLP35573 1532 aa26.45■■□□□ 1.83
CLSTN3-210ENST00000540931 NCOA1Q15788 1441 aa26.45■■□□□ 1.82
CLSTN3-210ENST00000540931 DUOX2Q9NRD8 1548 aa26.44■■□□□ 1.82
CLSTN3-210ENST00000540931 KIF15Q9NS87 1388 aa26.42■■□□□ 1.82
CLSTN3-210ENST00000540931 CHIC2Q9UKJ5 165 aa26.41■■□□□ 1.82
CLSTN3-210ENST00000540931 PPP6R1Q9UPN7 881 aa26.41■■□□□ 1.82
CLSTN3-210ENST00000540931 ITGAEP38570 1179 aa26.4■■□□□ 1.82
CLSTN3-210ENST00000540931 HSPA2P54652 639 aa26.4■■□□□ 1.82
CLSTN3-210ENST00000540931 ACIN1Q9UKV3 1341 aaKnown RBP26.39■■□□□ 1.82
CLSTN3-210ENST00000540931 SIGLEC1Q9BZZ2 1709 aa26.39■■□□□ 1.82
CLSTN3-210ENST00000540931 ERBINQ96RT1 1412 aa26.39■■□□□ 1.81
CLSTN3-210ENST00000540931 RRP7BPQ9NSQ0 103 aa26.37■■□□□ 1.81
CLSTN3-210ENST00000540931 PLPPR3Q6T4P5 718 aa26.35■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms