RNA–Protein interactions for RNA: ENST00000540846.6

SMAD3-204, Transcript of SMAD family member 3, humanhuman

TSL 1 (best) BASIC

Gene SMAD3, Length 1,567 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-204ENST00000540846 MIA2Q96PC5 1412 aa19.02■□□□□ 0.64
SMAD3-204ENST00000540846 PTPN23Q9H3S7 1636 aa19.02■□□□□ 0.63
SMAD3-204ENST00000540846 PLCH2O75038 1416 aa19.01■□□□□ 0.63
SMAD3-204ENST00000540846 TCOF1Q13428 1488 aaKnown RBP19.01■□□□□ 0.63
SMAD3-204ENST00000540846 PPRC1Q5VV67 1664 aaKnown RBP18.99■□□□□ 0.63
SMAD3-204ENST00000540846 SAMD9LQ8IVG5 1584 aa18.98■□□□□ 0.63
SMAD3-204ENST00000540846 ARHGAP5Q13017 1502 aa18.96■□□□□ 0.63
SMAD3-204ENST00000540846 CAMSAP2Q08AD1 1489 aa18.95■□□□□ 0.62
SMAD3-204ENST00000540846 CD109Q6YHK3 1445 aa18.95■□□□□ 0.62
SMAD3-204ENST00000540846 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.95■□□□□ 0.62
SMAD3-204ENST00000540846 CFDP1Q9UEE9 299 aaPredicted RBP18.92■□□□□ 0.62
SMAD3-204ENST00000540846 ZNF644Q9H582 1327 aaPredicted RBP18.91■□□□□ 0.62
SMAD3-204ENST00000540846 CFAP74Q9C0B2 1584 aa18.91■□□□□ 0.62
SMAD3-204ENST00000540846 FAM69CQ0P6D2 419 aa18.91■□□□□ 0.62
SMAD3-204ENST00000540846 ABCC1P33527 1531 aa18.91■□□□□ 0.62
SMAD3-204ENST00000540846 TSPOAP1O95153 1857 aa18.91■□□□□ 0.62
SMAD3-204ENST00000540846 FANCAO15360 1455 aa18.91■□□□□ 0.62
SMAD3-204ENST00000540846 DNMT1P26358 1616 aaKnown RBP18.9■□□□□ 0.62
SMAD3-204ENST00000540846 CROCC2H7BZ55 1655 aa18.89■□□□□ 0.61
SMAD3-204ENST00000540846 SYCP2Q9BX26 1530 aa18.88■□□□□ 0.61
SMAD3-204ENST00000540846 ARHGEF12Q9NZN5 1544 aa18.88■□□□□ 0.61
SMAD3-204ENST00000540846 ARHGEF5Q12774 1597 aa18.87■□□□□ 0.61
SMAD3-204ENST00000540846 MBD5Q9P267 1494 aa18.87■□□□□ 0.61
SMAD3-204ENST00000540846 NEO1Q92859 1461 aa18.86■□□□□ 0.61
SMAD3-204ENST00000540846 KIAA1107Q9UPP5 1409 aa18.85■□□□□ 0.61
SMAD3-204ENST00000540846 PLEKHH2Q8IVE3 1493 aa18.85■□□□□ 0.61
SMAD3-204ENST00000540846 EFCAB2Q5VUJ9 269 aa18.85■□□□□ 0.61
SMAD3-204ENST00000540846 FAM50AQ14320 339 aaKnown RBP18.84■□□□□ 0.61
SMAD3-204ENST00000540846 PTPRKQ15262 1439 aa18.83■□□□□ 0.61
SMAD3-204ENST00000540846 AKNAQ7Z591 1439 aa18.83■□□□□ 0.61
SMAD3-204ENST00000540846 ZEB1P37275 1124 aaPredicted RBP18.82■□□□□ 0.6
SMAD3-204ENST00000540846 ZNF777Q9ULD5 760 aaPredicted RBP18.82■□□□□ 0.6
SMAD3-204ENST00000540846 ABCC5O15440 1437 aa18.82■□□□□ 0.6
SMAD3-204ENST00000540846 DAPK1P53355 1430 aa18.82■□□□□ 0.6
SMAD3-204ENST00000540846 ADGRL1O94910 1474 aa18.82■□□□□ 0.6
SMAD3-204ENST00000540846 TEX14Q8IWB6 1497 aa18.81■□□□□ 0.6
SMAD3-204ENST00000540846 CCDC141Q6ZP82 1450 aa18.79■□□□□ 0.6
SMAD3-204ENST00000540846 RICTORQ6R327 1708 aa18.79■□□□□ 0.6
SMAD3-204ENST00000540846 SHANK2Q9UPX8 1470 aa18.78■□□□□ 0.6
SMAD3-204ENST00000540846 TRAPPC8Q9Y2L5 1435 aa18.78■□□□□ 0.6
SMAD3-204ENST00000540846 MAST1Q9Y2H9 1570 aa18.78■□□□□ 0.6
SMAD3-204ENST00000540846 ADGBQ8N7X0 1667 aa18.77■□□□□ 0.6
SMAD3-204ENST00000540846 FRMPD1Q5SYB0 1578 aa18.77■□□□□ 0.6
SMAD3-204ENST00000540846 SCAPERQ9BY12 1400 aa18.77■□□□□ 0.59
SMAD3-204ENST00000540846 HNRNPMP52272 730 aaKnown RBP eCLIP18.76■□□□□ 0.592e-6■■■□□ 18
SMAD3-204ENST00000540846 KDM5CP41229 1560 aa18.76■□□□□ 0.59
SMAD3-204ENST00000540846 POGZQ7Z3K3 1410 aa18.75■□□□□ 0.59
SMAD3-204ENST00000540846 INO80Q9ULG1 1556 aaPredicted RBP18.74■□□□□ 0.59
SMAD3-204ENST00000540846 ADGRL2O95490 1459 aa18.73■□□□□ 0.59
SMAD3-204ENST00000540846 ZFYVE16Q7Z3T8 1539 aa18.72■□□□□ 0.59
SMAD3-204ENST00000540846 ZNF518AQ6AHZ1 1483 aa18.72■□□□□ 0.59
SMAD3-204ENST00000540846 TRHP20396 242 aaPredicted RBP18.72■□□□□ 0.59
SMAD3-204ENST00000540846 COL17A1Q9UMD9 1497 aaPredicted RBP18.71■□□□□ 0.59
SMAD3-204ENST00000540846 C9orf84Q5VXU9 1444 aa18.71■□□□□ 0.59
SMAD3-204ENST00000540846 ITGAEP38570 1179 aa18.71■□□□□ 0.59
SMAD3-204ENST00000540846 GCC2Q8IWJ2 1684 aa18.71■□□□□ 0.59
SMAD3-204ENST00000540846 DENND4BO75064 1496 aaPredicted RBP18.7■□□□□ 0.58
SMAD3-204ENST00000540846 PLXNC1O60486 1568 aa18.7■□□□□ 0.58
SMAD3-204ENST00000540846 RSPH4AQ5TD94 716 aa18.7■□□□□ 0.58
SMAD3-204ENST00000540846 CCER1Q8TC90 406 aaPredicted RBP18.7■□□□□ 0.58
SMAD3-204ENST00000540846 KIDINS220Q9ULH0 1771 aa18.69■□□□□ 0.58
SMAD3-204ENST00000540846 ZMYM4Q5VZL5 1548 aa18.69■□□□□ 0.58
SMAD3-204ENST00000540846 ROCK1Q13464 1354 aa18.68■□□□□ 0.58
SMAD3-204ENST00000540846 HECW2Q9P2P5 1572 aa18.68■□□□□ 0.58
SMAD3-204ENST00000540846 AFAP1Q8N556 730 aa18.68■□□□□ 0.58
SMAD3-204ENST00000540846 ATP7AQ04656 1500 aa18.67■□□□□ 0.58
SMAD3-204ENST00000540846 HFM1A2PYH4 1435 aa18.67■□□□□ 0.58
SMAD3-204ENST00000540846 NCOA1Q15788 1441 aa18.67■□□□□ 0.58
SMAD3-204ENST00000540846 RTEL1-TNFRSF6BF6WH68 1400 aa18.66■□□□□ 0.58
SMAD3-204ENST00000540846 NAIPQ13075 1403 aa18.65■□□□□ 0.58
SMAD3-204ENST00000540846 MLH3Q9UHC1 1453 aa18.65■□□□□ 0.58
SMAD3-204ENST00000540846 CHIC2Q9UKJ5 165 aa18.64■□□□□ 0.57
SMAD3-204ENST00000540846 KDM6BO15054 1643 aa18.63■□□□□ 0.57
SMAD3-204ENST00000540846 ABCA6Q8N139 1617 aa18.63■□□□□ 0.57
SMAD3-204ENST00000540846 RAPGEF3O95398 923 aa18.63■□□□□ 0.57
SMAD3-204ENST00000540846 TSPY4P0CV99 314 aa18.61■□□□□ 0.57
SMAD3-204ENST00000540846 TSPY10P0CW01 314 aa18.61■□□□□ 0.57
SMAD3-204ENST00000540846 SPAG9O60271 1321 aaKnown RBP18.61■□□□□ 0.57
SMAD3-204ENST00000540846 ANKRD30AQ9BXX3 1397 aa18.61■□□□□ 0.57
SMAD3-204ENST00000540846 DIP2CQ9Y2E4 1556 aa18.6■□□□□ 0.57
SMAD3-204ENST00000540846 SETD5Q9C0A6 1442 aa18.58■□□□□ 0.56
SMAD3-204ENST00000540846 KIF15Q9NS87 1388 aa18.58■□□□□ 0.56
SMAD3-204ENST00000540846 RRP7BPQ9NSQ0 103 aa18.58■□□□□ 0.56
SMAD3-204ENST00000540846 MAGI2Q86UL8 1455 aa18.57■□□□□ 0.56
SMAD3-204ENST00000540846 DUOX2Q9NRD8 1548 aa18.57■□□□□ 0.56
SMAD3-204ENST00000540846 YEATS2Q9ULM3 1422 aa18.56■□□□□ 0.56
SMAD3-204ENST00000540846 ARHGEF40Q8TER5 1519 aa18.56■□□□□ 0.56
SMAD3-204ENST00000540846 RAB3GAP2Q9H2M9 1393 aa18.55■□□□□ 0.56
SMAD3-204ENST00000540846 BCORL1Q5H9F3 1711 aa18.52■□□□□ 0.56
SMAD3-204ENST00000540846 EIF2AK4Q9P2K8 1649 aaKnown RBP18.52■□□□□ 0.56
SMAD3-204ENST00000540846 ANKRD50Q9ULJ7 1429 aa18.52■□□□□ 0.56
SMAD3-204ENST00000540846 REREQ9P2R6 1566 aa18.52■□□□□ 0.56
SMAD3-204ENST00000540846 SIGLEC1Q9BZZ2 1709 aa18.52■□□□□ 0.56
SMAD3-204ENST00000540846 ERBINQ96RT1 1412 aa18.51■□□□□ 0.55
SMAD3-204ENST00000540846 DEPDC5O75140 1603 aa18.5■□□□□ 0.55
SMAD3-204ENST00000540846 DHX57Q6P158 1386 aaKnown RBP18.5■□□□□ 0.55
SMAD3-204ENST00000540846 A2MP01023 1474 aa18.49■□□□□ 0.55
SMAD3-204ENST00000540846 UNC13BO14795 1591 aa18.49■□□□□ 0.55
SMAD3-204ENST00000540846 DHX29Q7Z478 1369 aaKnown RBP18.48■□□□□ 0.55
SMAD3-204ENST00000540846 CLSPNQ9HAW4 1339 aa18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms