RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 ZNF592Q92610 1267 aa10.96□□□□□ -0.65
YBX3-208ENST00000540447 MFAP1P55081 439 aaKnown RBP10.96□□□□□ -0.66
YBX3-208ENST00000540447 CHMP4BQ9H444 224 aaKnown RBP10.95□□□□□ -0.66
YBX3-208ENST00000540447 DIAPH3Q9NSV4 1193 aa10.95□□□□□ -0.66
YBX3-208ENST00000540447 TPM4P67936 248 aa10.95□□□□□ -0.66
YBX3-208ENST00000540447 TAF7LQ5H9L4 462 aa10.95□□□□□ -0.66
YBX3-208ENST00000540447 FOXD4L1Q9NU39 408 aa10.94□□□□□ -0.66
YBX3-208ENST00000540447 FAM161AQ3B820 660 aa10.94□□□□□ -0.66
YBX3-208ENST00000540447 EEA1Q15075 1411 aa10.94□□□□□ -0.66
YBX3-208ENST00000540447 PDCL3Q9H2J4 239 aa10.94□□□□□ -0.66
YBX3-208ENST00000540447 NUDCQ9Y266 331 aa10.94□□□□□ -0.66
YBX3-208ENST00000540447 GNL2Q13823 731 aaKnown RBP10.93□□□□□ -0.66
YBX3-208ENST00000540447 KIAA1211Q6ZU35 1233 aa10.92□□□□□ -0.66
YBX3-208ENST00000540447 CCAR2Q8N163 923 aaKnown RBP10.92□□□□□ -0.66
YBX3-208ENST00000540447 KDM2AQ9Y2K7 1162 aa10.92□□□□□ -0.66
YBX3-208ENST00000540447 FGD1P98174 961 aa10.92□□□□□ -0.66
YBX3-208ENST00000540447 PRDM10Q9NQV6 1147 aa10.92□□□□□ -0.66
YBX3-208ENST00000540447 ARGLU1Q9NWB6 273 aaPredicted RBP10.92□□□□□ -0.66
YBX3-208ENST00000540447 TSPYL1Q9H0U9 437 aa10.91□□□□□ -0.66
YBX3-208ENST00000540447 P3H3Q8IVL6 736 aa10.91□□□□□ -0.66
YBX3-208ENST00000540447 PAK3O75914 559 aaPredicted RBP10.91□□□□□ -0.66
YBX3-208ENST00000540447 DEF6Q9H4E7 631 aa10.91□□□□□ -0.66
YBX3-208ENST00000540447 ZHX1Q9UKY1 873 aaPredicted RBP10.91□□□□□ -0.66
YBX3-208ENST00000540447 CCDC39Q9UFE4 941 aa10.91□□□□□ -0.66
YBX3-208ENST00000540447 HMGN5P82970 282 aaKnown RBP10.9□□□□□ -0.66
YBX3-208ENST00000540447 UQCRHLA0A096LP55 91 aa10.9□□□□□ -0.66
YBX3-208ENST00000540447 UQCRHP07919 91 aa10.9□□□□□ -0.66
YBX3-208ENST00000540447 HSP90AB3PQ58FF7 597 aa10.9□□□□□ -0.66
YBX3-208ENST00000540447 KCNJ4P48050 445 aa10.9□□□□□ -0.66
YBX3-208ENST00000540447 H0YHG0 523 aa10.89□□□□□ -0.67
YBX3-208ENST00000540447 NASPP49321 788 aaPredicted RBP10.89□□□□□ -0.67
YBX3-208ENST00000540447 IRX3P78415 501 aaPredicted RBP10.89□□□□□ -0.67
YBX3-208ENST00000540447 NEUROD2Q15784 382 aa10.89□□□□□ -0.67
YBX3-208ENST00000540447 KIF16BQ96L93 1317 aa10.89□□□□□ -0.67
YBX3-208ENST00000540447 RWDD1Q9H446 243 aaPredicted RBP10.88□□□□□ -0.67
YBX3-208ENST00000540447 CHMP5Q9NZZ3 219 aa10.88□□□□□ -0.67
YBX3-208ENST00000540447 TAOK2Q9UL54 1235 aa10.88□□□□□ -0.67
YBX3-208ENST00000540447 CGNQ9P2M7 1197 aaKnown RBP10.87□□□□□ -0.67
YBX3-208ENST00000540447 NAP1L2Q9ULW6 460 aaPredicted RBP10.87□□□□□ -0.67
YBX3-208ENST00000540447 SIN3AQ96ST3 1273 aa10.87□□□□□ -0.67
YBX3-208ENST00000540447 CHIC2Q9UKJ5 165 aa10.87□□□□□ -0.67
YBX3-208ENST00000540447 TPM3P06753 285 aa10.86□□□□□ -0.67
YBX3-208ENST00000540447 CCDC173Q0VFZ6 552 aa10.86□□□□□ -0.67
YBX3-208ENST00000540447 LEKR1Q6ZMV7 388 aa10.86□□□□□ -0.67
YBX3-208ENST00000540447 PMFBP1Q8TBY8 1022 aa10.86□□□□□ -0.67
YBX3-208ENST00000540447 PAXIP1Q6ZW49 1069 aaPredicted RBP10.86□□□□□ -0.67
YBX3-208ENST00000540447 KNSTRNQ9Y448 316 aa10.86□□□□□ -0.67
YBX3-208ENST00000540447 E9PSI1 815 aa10.85□□□□□ -0.67
YBX3-208ENST00000540447 CHMP4AQ9BY43 222 aa10.85□□□□□ -0.67
YBX3-208ENST00000540447 ESPNB1AK53 854 aa10.85□□□□□ -0.67
YBX3-208ENST00000540447 CFAP53Q96M91 514 aa10.85□□□□□ -0.67
YBX3-208ENST00000540447 KCNH8Q96L42 1107 aa10.85□□□□□ -0.67
YBX3-208ENST00000540447 ZNF777Q9ULD5 760 aaPredicted RBP10.85□□□□□ -0.67
YBX3-208ENST00000540447 ACBD3Q9H3P7 528 aa10.85□□□□□ -0.67
YBX3-208ENST00000540447 FRAT2O75474 233 aaPredicted RBP10.84□□□□□ -0.67
YBX3-208ENST00000540447 HSP90B2PQ58FF3 399 aa10.84□□□□□ -0.67
YBX3-208ENST00000540447 CC2D1BQ5T0F9 858 aaKnown RBP10.84□□□□□ -0.67
YBX3-208ENST00000540447 MSH5O43196 834 aa10.84□□□□□ -0.67
YBX3-208ENST00000540447 CENPQQ7L2Z9 268 aaPredicted RBP10.84□□□□□ -0.67
YBX3-208ENST00000540447 RRP12Q5JTH9 1297 aaKnown RBP10.84□□□□□ -0.67
YBX3-208ENST00000540447 STK11IPQ8N1F8 1099 aa10.84□□□□□ -0.67
YBX3-208ENST00000540447 U2SURPO15042 1029 aaKnown RBP10.84□□□□□ -0.67
YBX3-208ENST00000540447 CCDC191Q8NCU4 936 aa10.84□□□□□ -0.67
YBX3-208ENST00000540447 ERICH4A6NGS2 130 aa10.83□□□□□ -0.68
YBX3-208ENST00000540447 USP8P40818 1118 aa10.83□□□□□ -0.68
YBX3-208ENST00000540447 FOXD4L5Q5VV16 416 aaPredicted RBP10.83□□□□□ -0.68
YBX3-208ENST00000540447 GPATCH11Q8N954 259 aa10.83□□□□□ -0.68
YBX3-208ENST00000540447 FOXD4L4Q8WXT5 416 aaPredicted RBP10.83□□□□□ -0.68
YBX3-208ENST00000540447 IFT57Q9NWB7 429 aa10.83□□□□□ -0.68
YBX3-208ENST00000540447 GOLGA6L19H0YKK7 550 aa10.83□□□□□ -0.68
YBX3-208ENST00000540447 TULP1O00294 542 aaPredicted RBP10.82□□□□□ -0.68
YBX3-208ENST00000540447 AK7Q96M32 723 aa10.82□□□□□ -0.68
YBX3-208ENST00000540447 MNS1Q8NEH6 495 aa10.82□□□□□ -0.68
YBX3-208ENST00000540447 TRAK2O60296 914 aa10.82□□□□□ -0.68
YBX3-208ENST00000540447 CCDC70Q6NSX1 233 aa10.82□□□□□ -0.68
YBX3-208ENST00000540447 CBX1P83916 185 aa10.82□□□□□ -0.68
YBX3-208ENST00000540447 PLCD3Q8N3E9 789 aa10.82□□□□□ -0.68
YBX3-208ENST00000540447 HOMER1Q86YM7 354 aa10.81□□□□□ -0.68
YBX3-208ENST00000540447 CALCOCO1Q9P1Z2 691 aa10.81□□□□□ -0.68
YBX3-208ENST00000540447 ST18O60284 1047 aa10.81□□□□□ -0.68
YBX3-208ENST00000540447 CEP162Q5TB80 1403 aa10.81□□□□□ -0.68
YBX3-208ENST00000540447 BCL11BQ9C0K0 894 aaPredicted RBP10.81□□□□□ -0.68
YBX3-208ENST00000540447 GIMAP7Q8NHV1 300 aa10.8□□□□□ -0.68
YBX3-208ENST00000540447 PLCD4Q9BRC7 762 aa10.8□□□□□ -0.68
YBX3-208ENST00000540447 EXOC6Q8TAG9 804 aa10.79□□□□□ -0.68
YBX3-208ENST00000540447 MAPK8IP3Q9UPT6 1336 aa10.79□□□□□ -0.68
YBX3-208ENST00000540447 DNAJC2Q99543 621 aaKnown RBP10.79□□□□□ -0.68
YBX3-208ENST00000540447 ARID3CA6NKF2 412 aa10.79□□□□□ -0.68
YBX3-208ENST00000540447 BECN2A8MW95 431 aa10.79□□□□□ -0.68
YBX3-208ENST00000540447 KIF3AQ9Y496 699 aa10.79□□□□□ -0.68
YBX3-208ENST00000540447 PDCL2Q8N4E4 241 aa10.78□□□□□ -0.68
YBX3-208ENST00000540447 GRPEL1Q9HAV7 217 aa10.78□□□□□ -0.68
YBX3-208ENST00000540447 CARD11Q9BXL7 1154 aa10.77□□□□□ -0.68
YBX3-208ENST00000540447 ISY1Q9ULR0 285 aaKnown RBP10.77□□□□□ -0.68
YBX3-208ENST00000540447 NEFHP12036 1026 aa10.77□□□□□ -0.69
YBX3-208ENST00000540447 CLIP1P30622 1438 aa10.76□□□□□ -0.69
YBX3-208ENST00000540447 TPD52L1Q16890 204 aaPredicted RBP10.76□□□□□ -0.69
YBX3-208ENST00000540447 RUFY1Q96T51 708 aa10.76□□□□□ -0.69
YBX3-208ENST00000540447 TNNT1P13805 278 aa10.76□□□□□ -0.69
YBX3-208ENST00000540447 RBM25P49756 843 aaKnown RBP10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms