RNA–Protein interactions for RNA: ENST00000540183.1

SEMA4D-222, Transcript of semaphorin 4D, humanhuman

TSL 3

Gene SEMA4D, Length 176 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-222ENST00000540183 FMN1Q68DA7 1419 aa23.63■■□□□ 1.37
SEMA4D-222ENST00000540183 PCF11O94913 1555 aaKnown RBP23.62■■□□□ 1.37
SEMA4D-222ENST00000540183 SCAPERQ9BY12 1400 aa23.61■■□□□ 1.37
SEMA4D-222ENST00000540183 FER1L4A9Z1Z3 1794 aa23.61■■□□□ 1.37
SEMA4D-222ENST00000540183 LMTK3Q96Q04 1460 aa23.61■■□□□ 1.37
SEMA4D-222ENST00000540183 POGZQ7Z3K3 1410 aa23.6■■□□□ 1.37
SEMA4D-222ENST00000540183 PLPPR3Q6T4P5 718 aa23.6■■□□□ 1.37
SEMA4D-222ENST00000540183 MAGI2Q86UL8 1455 aa23.56■■□□□ 1.36
SEMA4D-222ENST00000540183 MLECQ14165 292 aa23.55■■□□□ 1.36
SEMA4D-222ENST00000540183 CDC42BPBQ9Y5S2 1711 aa23.54■■□□□ 1.36
SEMA4D-222ENST00000540183 TROQ12816 1431 aaPredicted RBP23.52■■□□□ 1.36
SEMA4D-222ENST00000540183 ARHGAP5Q13017 1502 aa23.51■■□□□ 1.35
SEMA4D-222ENST00000540183 EFCAB2Q5VUJ9 269 aa23.51■■□□□ 1.35
SEMA4D-222ENST00000540183 HSPA2P54652 639 aa23.49■■□□□ 1.35
SEMA4D-222ENST00000540183 CDK11AQ9UQ88 783 aaPredicted RBP23.49■■□□□ 1.35
SEMA4D-222ENST00000540183 ATP10AO60312 1499 aa23.49■■□□□ 1.35
SEMA4D-222ENST00000540183 KDM5CP41229 1560 aa23.46■■□□□ 1.35
SEMA4D-222ENST00000540183 C9orf84Q5VXU9 1444 aa23.46■■□□□ 1.35
SEMA4D-222ENST00000540183 ARHGEF12Q9NZN5 1544 aa23.46■■□□□ 1.35
SEMA4D-222ENST00000540183 PREX2Q70Z35 1606 aa23.45■■□□□ 1.34
SEMA4D-222ENST00000540183 CLIP1P30622 1438 aa23.45■■□□□ 1.34
SEMA4D-222ENST00000540183 AFAP1Q8N556 730 aa23.44■■□□□ 1.34
SEMA4D-222ENST00000540183 ZNF518AQ6AHZ1 1483 aa23.43■■□□□ 1.34
SEMA4D-222ENST00000540183 DIP2CQ9Y2E4 1556 aa23.43■■□□□ 1.34
SEMA4D-222ENST00000540183 CDC42BPAQ5VT25 1732 aa23.42■■□□□ 1.34
SEMA4D-222ENST00000540183 ABCA6Q8N139 1617 aa23.42■■□□□ 1.34
SEMA4D-222ENST00000540183 FBXO41Q8TF61 875 aa23.42■■□□□ 1.34
SEMA4D-222ENST00000540183 ITSN2Q9NZM3 1697 aa23.41■■□□□ 1.34
SEMA4D-222ENST00000540183 CASKIN1Q8WXD9 1431 aa23.41■■□□□ 1.34
SEMA4D-222ENST00000540183 PREX1Q8TCU6 1659 aa23.39■■□□□ 1.34
SEMA4D-222ENST00000540183 ABCC1P33527 1531 aa23.38■■□□□ 1.33
SEMA4D-222ENST00000540183 CCDC18Q5T9S5 1454 aa23.37■■□□□ 1.33
SEMA4D-222ENST00000540183 CEBPAP49715 358 aaPredicted RBP23.37■■□□□ 1.33
SEMA4D-222ENST00000540183 MYT1LQ9UL68 1186 aa23.36■■□□□ 1.33
SEMA4D-222ENST00000540183 TRAPPC8Q9Y2L5 1435 aa23.35■■□□□ 1.33
SEMA4D-222ENST00000540183 KIDINS220Q9ULH0 1771 aa23.33■■□□□ 1.33
SEMA4D-222ENST00000540183 REREQ9P2R6 1566 aa23.32■■□□□ 1.32
SEMA4D-222ENST00000540183 C3P01024 1663 aa23.32■■□□□ 1.32
SEMA4D-222ENST00000540183 FYCO1Q9BQS8 1478 aa23.31■■□□□ 1.32
SEMA4D-222ENST00000540183 MLH3Q9UHC1 1453 aa23.31■■□□□ 1.32
SEMA4D-222ENST00000540183 STRCQ7RTU9 1775 aa23.3■■□□□ 1.32
SEMA4D-222ENST00000540183 SAMD9LQ8IVG5 1584 aa23.28■■□□□ 1.32
SEMA4D-222ENST00000540183 SETD1BQ9UPS6 1966 aaKnown RBP23.28■■□□□ 1.32
SEMA4D-222ENST00000540183 AGLP35573 1532 aa23.23■■□□□ 1.31
SEMA4D-222ENST00000540183 SYCP2Q9BX26 1530 aa23.23■■□□□ 1.31
SEMA4D-222ENST00000540183 ZNF777Q9ULD5 760 aaPredicted RBP23.23■■□□□ 1.31
SEMA4D-222ENST00000540183 SUPT6HQ7KZ85 1726 aaKnown RBP23.22■■□□□ 1.31
SEMA4D-222ENST00000540183 GPATCH8Q9UKJ3 1502 aaKnown RBP23.21■■□□□ 1.31
SEMA4D-222ENST00000540183 UHRF1BP1Q6BDS2 1440 aa23.18■■□□□ 1.3
SEMA4D-222ENST00000540183 CERKQ8TCT0 537 aa23.18■■□□□ 1.3
SEMA4D-222ENST00000540183 HNRNPMP52272 730 aaKnown RBP eCLIP23.16■■□□□ 1.3
SEMA4D-222ENST00000540183 INO80Q9ULG1 1556 aaPredicted RBP23.13■■□□□ 1.29
SEMA4D-222ENST00000540183 ATP7AQ04656 1500 aa23.13■■□□□ 1.29
SEMA4D-222ENST00000540183 MROH2AA6NES4 1674 aa23.12■■□□□ 1.29
SEMA4D-222ENST00000540183 CLTCQ00610 1675 aaKnown RBP23.12■■□□□ 1.29
SEMA4D-222ENST00000540183 ESF1Q9H501 851 aaKnown RBP23.11■■□□□ 1.29
SEMA4D-222ENST00000540183 SPAG9O60271 1321 aaKnown RBP23.1■■□□□ 1.29
SEMA4D-222ENST00000540183 TIAM1Q13009 1591 aa23.1■■□□□ 1.29
SEMA4D-222ENST00000540183 CCNB3Q8WWL7 1395 aa23.09■■□□□ 1.29
SEMA4D-222ENST00000540183 CFDP1Q9UEE9 299 aaPredicted RBP23.08■■□□□ 1.29
SEMA4D-222ENST00000540183 PLXNC1O60486 1568 aa23.08■■□□□ 1.29
SEMA4D-222ENST00000540183 MTUS2Q5JR59 1369 aa23.07■■□□□ 1.28
SEMA4D-222ENST00000540183 CNTLNQ9NXG0 1405 aa23.07■■□□□ 1.28
SEMA4D-222ENST00000540183 KIAA1107Q9UPP5 1409 aa23.06■■□□□ 1.28
SEMA4D-222ENST00000540183 ZNF644Q9H582 1327 aaPredicted RBP23.05■■□□□ 1.28
SEMA4D-222ENST00000540183 PLEKHH2Q8IVE3 1493 aa23.05■■□□□ 1.28
SEMA4D-222ENST00000540183 ADGBQ8N7X0 1667 aa23.04■■□□□ 1.28
SEMA4D-222ENST00000540183 A2MP01023 1474 aa23.03■■□□□ 1.28
SEMA4D-222ENST00000540183 EHBP1L1Q8N3D4 1523 aa23.03■■□□□ 1.28
SEMA4D-222ENST00000540183 DMRT2Q9Y5R5 561 aa23.02■■□□□ 1.28
SEMA4D-222ENST00000540183 ZMYM3Q14202 1370 aa23.01■■□□□ 1.27
SEMA4D-222ENST00000540183 CAMSAP1Q5T5Y3 1602 aa23■■□□□ 1.27
SEMA4D-222ENST00000540183 PTPRTO14522 1441 aa23■■□□□ 1.27
SEMA4D-222ENST00000540183 MYO3AQ8NEV4 1616 aa23■■□□□ 1.27
SEMA4D-222ENST00000540183 NCOA1Q15788 1441 aa22.99■■□□□ 1.27
SEMA4D-222ENST00000540183 CEP162Q5TB80 1403 aa22.99■■□□□ 1.27
SEMA4D-222ENST00000540183 NPATQ14207 1427 aa22.98■■□□□ 1.27
SEMA4D-222ENST00000540183 MBD5Q9P267 1494 aa22.97■■□□□ 1.27
SEMA4D-222ENST00000540183 LTBP4Q8N2S1 1624 aa22.97■■□□□ 1.27
SEMA4D-222ENST00000540183 ZNF142P52746 1687 aaPredicted RBP22.97■■□□□ 1.27
SEMA4D-222ENST00000540183 GGT6Q6P531 493 aa22.96■■□□□ 1.27
SEMA4D-222ENST00000540183 PTPRKQ15262 1439 aa22.92■■□□□ 1.26
SEMA4D-222ENST00000540183 NCKAP5LQ9HCH0 1330 aa22.91■■□□□ 1.26
SEMA4D-222ENST00000540183 CEP170BQ9Y4F5 1589 aaPredicted RBP22.91■■□□□ 1.26
SEMA4D-222ENST00000540183 NCOA2Q15596 1464 aa22.9■■□□□ 1.26
SEMA4D-222ENST00000540183 CAMSAP2Q08AD1 1489 aa22.88■■□□□ 1.25
SEMA4D-222ENST00000540183 RTEL1-TNFRSF6BF6WH68 1400 aa22.86■■□□□ 1.25
SEMA4D-222ENST00000540183 CCDC141Q6ZP82 1450 aa22.85■■□□□ 1.25
SEMA4D-222ENST00000540183 DHX29Q7Z478 1369 aaKnown RBP22.84■■□□□ 1.25
SEMA4D-222ENST00000540183 DNMT1P26358 1616 aaKnown RBP22.82■■□□□ 1.24
SEMA4D-222ENST00000540183 ZNF335Q9H4Z2 1342 aaPredicted RBP22.82■■□□□ 1.24
SEMA4D-222ENST00000540183 PLA2R1Q13018 1463 aa22.81■■□□□ 1.24
SEMA4D-222ENST00000540183 TCOF1Q13428 1488 aaKnown RBP22.81■■□□□ 1.24
SEMA4D-222ENST00000540183 KIF3BO15066 747 aa22.79■■□□□ 1.24
SEMA4D-222ENST00000540183 POLR1AO95602 1720 aaPredicted RBP22.79■■□□□ 1.24
SEMA4D-222ENST00000540183 IQSEC2Q5JU85 1478 aa22.79■■□□□ 1.24
SEMA4D-222ENST00000540183 LOC105371045A0A1W2PR82 267 aa22.78■■□□□ 1.24
SEMA4D-222ENST00000540183 ARHGEF5Q12774 1597 aa22.78■■□□□ 1.24
SEMA4D-222ENST00000540183 PPP6R1Q9UPN7 881 aa22.78■■□□□ 1.24
SEMA4D-222ENST00000540183 A2ML1A8K2U0 1454 aa22.78■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms