RNA–Protein interactions for RNA: ENST00000540017.6

SNRPA1-203, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 1 (best)

Gene SNRPA1, Length 506 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-203ENST00000540017 PREX2Q70Z35 1606 aa29.05■■■□□ 2.24
SNRPA1-203ENST00000540017 CDC42BPAQ5VT25 1732 aa29.05■■■□□ 2.24
SNRPA1-203ENST00000540017 SCAPERQ9BY12 1400 aa29.04■■■□□ 2.24
SNRPA1-203ENST00000540017 TIAM1Q13009 1591 aa29.04■■■□□ 2.24
SNRPA1-203ENST00000540017 EHBP1L1Q8N3D4 1523 aa29.03■■■□□ 2.24
SNRPA1-203ENST00000540017 GPATCH8Q9UKJ3 1502 aaKnown RBP29■■■□□ 2.23
SNRPA1-203ENST00000540017 KDM4FA0A1W2PPD8 638 aa28.98■■■□□ 2.23
SNRPA1-203ENST00000540017 POGZQ7Z3K3 1410 aa28.97■■■□□ 2.23
SNRPA1-203ENST00000540017 CCNB3Q8WWL7 1395 aa28.95■■■□□ 2.22
SNRPA1-203ENST00000540017 ZMYM4Q5VZL5 1548 aa28.94■■■□□ 2.22
SNRPA1-203ENST00000540017 MAP3K1Q13233 1512 aa28.93■■■□□ 2.22
SNRPA1-203ENST00000540017 ARHGEF12Q9NZN5 1544 aa28.93■■■□□ 2.22
SNRPA1-203ENST00000540017 LRRC9Q6ZRR7 1453 aa28.92■■■□□ 2.22
SNRPA1-203ENST00000540017 KANK4Q5T7N3 995 aaPredicted RBP28.92■■■□□ 2.22
SNRPA1-203ENST00000540017 ABCC1P33527 1531 aa28.91■■■□□ 2.22
SNRPA1-203ENST00000540017 ZNF777Q9ULD5 760 aaPredicted RBP28.9■■■□□ 2.22
SNRPA1-203ENST00000540017 NCOA2Q15596 1464 aa28.9■■■□□ 2.22
SNRPA1-203ENST00000540017 SAMD9LQ8IVG5 1584 aa28.89■■■□□ 2.22
SNRPA1-203ENST00000540017 AFAP1Q8N556 730 aa28.89■■■□□ 2.22
SNRPA1-203ENST00000540017 YEATS2Q9ULM3 1422 aa28.88■■■□□ 2.21
SNRPA1-203ENST00000540017 AEBP2Q6ZN18 517 aaPredicted RBP28.88■■■□□ 2.21
SNRPA1-203ENST00000540017 CFDP1Q9UEE9 299 aaPredicted RBP28.88■■■□□ 2.21
SNRPA1-203ENST00000540017 SUPT6HQ7KZ85 1726 aaKnown RBP28.88■■■□□ 2.21
SNRPA1-203ENST00000540017 ARHGEF40Q8TER5 1519 aa28.88■■■□□ 2.21
SNRPA1-203ENST00000540017 TRAPPC8Q9Y2L5 1435 aa28.86■■■□□ 2.21
SNRPA1-203ENST00000540017 ZNF518AQ6AHZ1 1483 aa28.86■■■□□ 2.21
SNRPA1-203ENST00000540017 ITSN2Q9NZM3 1697 aa28.85■■■□□ 2.21
SNRPA1-203ENST00000540017 MAGI2Q86UL8 1455 aa28.85■■■□□ 2.21
SNRPA1-203ENST00000540017 ZFYVE16Q7Z3T8 1539 aa28.84■■■□□ 2.21
SNRPA1-203ENST00000540017 KDM5CP41229 1560 aa28.84■■■□□ 2.21
SNRPA1-203ENST00000540017 ZNF644Q9H582 1327 aaPredicted RBP28.81■■■□□ 2.2
SNRPA1-203ENST00000540017 SYCP2Q9BX26 1530 aa28.8■■■□□ 2.2
SNRPA1-203ENST00000540017 HNRNPMP52272 730 aaKnown RBP eCLIP28.8■■■□□ 2.2
SNRPA1-203ENST00000540017 APLP2Q06481 763 aa28.77■■■□□ 2.2
SNRPA1-203ENST00000540017 SIGLEC1Q9BZZ2 1709 aa28.77■■■□□ 2.2
SNRPA1-203ENST00000540017 KIAA1107Q9UPP5 1409 aa28.76■■■□□ 2.19
SNRPA1-203ENST00000540017 HECW2Q9P2P5 1572 aa28.75■■■□□ 2.19
SNRPA1-203ENST00000540017 PLEKHH2Q8IVE3 1493 aa28.74■■■□□ 2.19
SNRPA1-203ENST00000540017 MLH3Q9UHC1 1453 aa28.73■■■□□ 2.19
SNRPA1-203ENST00000540017 ATP10AO60312 1499 aa28.72■■■□□ 2.19
SNRPA1-203ENST00000540017 ARID4BQ4LE39 1312 aaPredicted RBP28.72■■■□□ 2.19
SNRPA1-203ENST00000540017 MYT1LQ9UL68 1186 aa28.7■■■□□ 2.18
SNRPA1-203ENST00000540017 MBD5Q9P267 1494 aa28.69■■■□□ 2.18
SNRPA1-203ENST00000540017 DIP2CQ9Y2E4 1556 aa28.69■■■□□ 2.18
SNRPA1-203ENST00000540017 KIDINS220Q9ULH0 1771 aa28.68■■■□□ 2.18
SNRPA1-203ENST00000540017 BCORL1Q5H9F3 1711 aa28.68■■■□□ 2.18
SNRPA1-203ENST00000540017 ABCA6Q8N139 1617 aa28.68■■■□□ 2.18
SNRPA1-203ENST00000540017 C9orf84Q5VXU9 1444 aa28.67■■■□□ 2.18
SNRPA1-203ENST00000540017 ADAMTSL3P82987 1691 aa28.67■■■□□ 2.18
SNRPA1-203ENST00000540017 CAMSAP2Q08AD1 1489 aa28.66■■■□□ 2.18
SNRPA1-203ENST00000540017 MYOM3Q5VTT5 1437 aa28.64■■■□□ 2.18
SNRPA1-203ENST00000540017 SPAG9O60271 1321 aaKnown RBP28.64■■■□□ 2.17
SNRPA1-203ENST00000540017 INO80Q9ULG1 1556 aaPredicted RBP28.59■■■□□ 2.17
SNRPA1-203ENST00000540017 ATP7AQ04656 1500 aa28.59■■■□□ 2.17
SNRPA1-203ENST00000540017 MIA2Q96PC5 1412 aa28.58■■■□□ 2.17
SNRPA1-203ENST00000540017 REREQ9P2R6 1566 aa28.58■■■□□ 2.17
SNRPA1-203ENST00000540017 MADDQ8WXG6 1647 aa28.58■■■□□ 2.17
SNRPA1-203ENST00000540017 MLECQ14165 292 aa28.57■■■□□ 2.16
SNRPA1-203ENST00000540017 CCDC141Q6ZP82 1450 aa28.54■■■□□ 2.16
SNRPA1-203ENST00000540017 ARHGEF5Q12774 1597 aa28.52■■■□□ 2.16
SNRPA1-203ENST00000540017 PTPRMP28827 1452 aa28.51■■■□□ 2.15
SNRPA1-203ENST00000540017 RSPH4AQ5TD94 716 aa28.5■■■□□ 2.15
SNRPA1-203ENST00000540017 AGLP35573 1532 aa28.49■■■□□ 2.15
SNRPA1-203ENST00000540017 RTEL1-TNFRSF6BF6WH68 1400 aa28.49■■■□□ 2.15
SNRPA1-203ENST00000540017 RIMS1Q86UR5 1692 aaKnown RBP28.48■■■□□ 2.15
SNRPA1-203ENST00000540017 FGD6Q6ZV73 1430 aa28.47■■■□□ 2.15
SNRPA1-203ENST00000540017 PTPN23Q9H3S7 1636 aa28.47■■■□□ 2.15
SNRPA1-203ENST00000540017 A2MP01023 1474 aa28.45■■■□□ 2.14
SNRPA1-203ENST00000540017 PPARGC1BQ86YN6 1023 aaKnown RBP28.44■■■□□ 2.14
SNRPA1-203ENST00000540017 PLXNC1O60486 1568 aa28.44■■■□□ 2.14
SNRPA1-203ENST00000540017 FER1L4A9Z1Z3 1794 aa28.43■■■□□ 2.14
SNRPA1-203ENST00000540017 ADGBQ8N7X0 1667 aa28.42■■■□□ 2.14
SNRPA1-203ENST00000540017 TCOF1Q13428 1488 aaKnown RBP28.41■■■□□ 2.14
SNRPA1-203ENST00000540017 TSPY4P0CV99 314 aa28.41■■■□□ 2.14
SNRPA1-203ENST00000540017 TSPY10P0CW01 314 aa28.41■■■□□ 2.14
SNRPA1-203ENST00000540017 MAST1Q9Y2H9 1570 aa28.37■■■□□ 2.13
SNRPA1-203ENST00000540017 DHX29Q7Z478 1369 aaKnown RBP28.37■■■□□ 2.13
SNRPA1-203ENST00000540017 ABCC5O15440 1437 aa28.36■■■□□ 2.13
SNRPA1-203ENST00000540017 PLPPR3Q6T4P5 718 aa28.34■■■□□ 2.13
SNRPA1-203ENST00000540017 DAPK1P53355 1430 aa28.32■■■□□ 2.12
SNRPA1-203ENST00000540017 DNMT1P26358 1616 aaKnown RBP28.31■■■□□ 2.12
SNRPA1-203ENST00000540017 CROCC2H7BZ55 1655 aa28.3■■■□□ 2.12
SNRPA1-203ENST00000540017 CEBPAP49715 358 aaPredicted RBP28.3■■■□□ 2.12
SNRPA1-203ENST00000540017 FAM50AQ14320 339 aaKnown RBP28.28■■■□□ 2.12
SNRPA1-203ENST00000540017 GGT6Q6P531 493 aa28.28■■■□□ 2.12
SNRPA1-203ENST00000540017 SHANK2Q9UPX8 1470 aa28.27■■■□□ 2.12
SNRPA1-203ENST00000540017 KIF3BO15066 747 aa28.25■■■□□ 2.11
SNRPA1-203ENST00000540017 ESF1Q9H501 851 aaKnown RBP28.23■■■□□ 2.11
SNRPA1-203ENST00000540017 CHIC2Q9UKJ5 165 aa28.21■■■□□ 2.11
SNRPA1-203ENST00000540017 C3P01024 1663 aa28.21■■■□□ 2.11
SNRPA1-203ENST00000540017 CNTLNQ9NXG0 1405 aa28.2■■■□□ 2.11
SNRPA1-203ENST00000540017 RRP7BPQ9NSQ0 103 aa28.19■■■□□ 2.1
SNRPA1-203ENST00000540017 KIF15Q9NS87 1388 aa28.18■■■□□ 2.1
SNRPA1-203ENST00000540017 CLTCQ00610 1675 aaKnown RBP28.18■■■□□ 2.1
SNRPA1-203ENST00000540017 DUOX2Q9NRD8 1548 aa28.17■■■□□ 2.1
SNRPA1-203ENST00000540017 LMTK3Q96Q04 1460 aa28.16■■■□□ 2.1
SNRPA1-203ENST00000540017 PPP6R1Q9UPN7 881 aa28.16■■■□□ 2.1
SNRPA1-203ENST00000540017 MROH2AA6NES4 1674 aa28.16■■■□□ 2.1
SNRPA1-203ENST00000540017 ZMYM3Q14202 1370 aa28.15■■■□□ 2.1
SNRPA1-203ENST00000540017 PTPRKQ15262 1439 aa28.14■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms