RNA–Protein interactions for RNA: ENST00000539662.1

HMGA2-209, Transcript of high mobility group AT-hook 2, humanhuman

TSL 3

Gene HMGA2, Length 485 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-209ENST00000539662 ADGRL1O94910 1474 aa17.05■□□□□ 0.32
HMGA2-209ENST00000539662 MTUS2Q5JR59 1369 aa17.05■□□□□ 0.32
HMGA2-209ENST00000539662 DENND4BO75064 1496 aaPredicted RBP17.05■□□□□ 0.32
HMGA2-209ENST00000539662 SCAPERQ9BY12 1400 aa17.04■□□□□ 0.32
HMGA2-209ENST00000539662 KDM4FA0A1W2PPD8 638 aa17.04■□□□□ 0.32
HMGA2-209ENST00000539662 EFCAB2Q5VUJ9 269 aa17.04■□□□□ 0.32
HMGA2-209ENST00000539662 GPATCH8Q9UKJ3 1502 aaKnown RBP17.04■□□□□ 0.32
HMGA2-209ENST00000539662 EHBP1L1Q8N3D4 1523 aa17.03■□□□□ 0.32
HMGA2-209ENST00000539662 ARHGEF12Q9NZN5 1544 aa17.02■□□□□ 0.32
HMGA2-209ENST00000539662 KANK4Q5T7N3 995 aaPredicted RBP17.02■□□□□ 0.32
HMGA2-209ENST00000539662 POGZQ7Z3K3 1410 aa17■□□□□ 0.31
HMGA2-209ENST00000539662 SAMD9LQ8IVG5 1584 aa16.99■□□□□ 0.31
HMGA2-209ENST00000539662 YEATS2Q9ULM3 1422 aa16.98■□□□□ 0.31
HMGA2-209ENST00000539662 ABCC1P33527 1531 aa16.98■□□□□ 0.31
HMGA2-209ENST00000539662 AFAP1Q8N556 730 aa16.98■□□□□ 0.31
HMGA2-209ENST00000539662 ZNF777Q9ULD5 760 aaPredicted RBP16.98■□□□□ 0.31
HMGA2-209ENST00000539662 SIGLEC1Q9BZZ2 1709 aa16.98■□□□□ 0.31
HMGA2-209ENST00000539662 LRRC9Q6ZRR7 1453 aa16.98■□□□□ 0.31
HMGA2-209ENST00000539662 ZMYM4Q5VZL5 1548 aa16.97■□□□□ 0.31
HMGA2-209ENST00000539662 CCNB3Q8WWL7 1395 aa16.97■□□□□ 0.31
HMGA2-209ENST00000539662 NCOA2Q15596 1464 aa16.97■□□□□ 0.31
HMGA2-209ENST00000539662 ITSN2Q9NZM3 1697 aa16.97■□□□□ 0.31
HMGA2-209ENST00000539662 TRAPPC8Q9Y2L5 1435 aa16.96■□□□□ 0.31
HMGA2-209ENST00000539662 SUPT6HQ7KZ85 1726 aaKnown RBP16.96■□□□□ 0.3
HMGA2-209ENST00000539662 ARHGEF40Q8TER5 1519 aa16.96■□□□□ 0.3
HMGA2-209ENST00000539662 ZNF644Q9H582 1327 aaPredicted RBP16.96■□□□□ 0.3
HMGA2-209ENST00000539662 MAP3K1Q13233 1512 aa16.95■□□□□ 0.3
HMGA2-209ENST00000539662 ZFYVE16Q7Z3T8 1539 aa16.93■□□□□ 0.3
HMGA2-209ENST00000539662 SYCP2Q9BX26 1530 aa16.93■□□□□ 0.3
HMGA2-209ENST00000539662 CFDP1Q9UEE9 299 aaPredicted RBP16.93■□□□□ 0.3
HMGA2-209ENST00000539662 KDM5CP41229 1560 aa16.93■□□□□ 0.3
HMGA2-209ENST00000539662 HNRNPMP52272 730 aaKnown RBP eCLIP16.92■□□□□ 0.32e-8■■□□□ 11.6
HMGA2-209ENST00000539662 ZNF518AQ6AHZ1 1483 aa16.91■□□□□ 0.3
HMGA2-209ENST00000539662 MAGI2Q86UL8 1455 aa16.88■□□□□ 0.29
HMGA2-209ENST00000539662 KIDINS220Q9ULH0 1771 aa16.87■□□□□ 0.29
HMGA2-209ENST00000539662 HECW2Q9P2P5 1572 aa16.87■□□□□ 0.29
HMGA2-209ENST00000539662 ABCA6Q8N139 1617 aa16.87■□□□□ 0.29
HMGA2-209ENST00000539662 DIP2CQ9Y2E4 1556 aa16.86■□□□□ 0.29
HMGA2-209ENST00000539662 BCORL1Q5H9F3 1711 aa16.85■□□□□ 0.29
HMGA2-209ENST00000539662 ARID4BQ4LE39 1312 aaPredicted RBP16.85■□□□□ 0.29
HMGA2-209ENST00000539662 MBD5Q9P267 1494 aa16.85■□□□□ 0.29
HMGA2-209ENST00000539662 MLH3Q9UHC1 1453 aa16.85■□□□□ 0.29
HMGA2-209ENST00000539662 ADAMTSL3P82987 1691 aa16.85■□□□□ 0.29
HMGA2-209ENST00000539662 MYT1LQ9UL68 1186 aa16.84■□□□□ 0.29
HMGA2-209ENST00000539662 KIAA1107Q9UPP5 1409 aa16.84■□□□□ 0.29
HMGA2-209ENST00000539662 ATP10AO60312 1499 aa16.84■□□□□ 0.29
HMGA2-209ENST00000539662 CAMSAP2Q08AD1 1489 aa16.84■□□□□ 0.29
HMGA2-209ENST00000539662 APLP2Q06481 763 aa16.83■□□□□ 0.28
HMGA2-209ENST00000539662 MADDQ8WXG6 1647 aa16.81■□□□□ 0.28
HMGA2-209ENST00000539662 PLEKHH2Q8IVE3 1493 aa16.81■□□□□ 0.28
HMGA2-209ENST00000539662 C9orf84Q5VXU9 1444 aa16.8■□□□□ 0.28
HMGA2-209ENST00000539662 MLECQ14165 292 aa16.8■□□□□ 0.28
HMGA2-209ENST00000539662 INO80Q9ULG1 1556 aaPredicted RBP16.8■□□□□ 0.28
HMGA2-209ENST00000539662 MYOM3Q5VTT5 1437 aa16.79■□□□□ 0.28
HMGA2-209ENST00000539662 SPAG9O60271 1321 aaKnown RBP16.79■□□□□ 0.28
HMGA2-209ENST00000539662 PPARGC1BQ86YN6 1023 aaKnown RBP16.79■□□□□ 0.28
HMGA2-209ENST00000539662 ATP7AQ04656 1500 aa16.78■□□□□ 0.28
HMGA2-209ENST00000539662 RIMS1Q86UR5 1692 aaKnown RBP16.76■□□□□ 0.27
HMGA2-209ENST00000539662 REREQ9P2R6 1566 aa16.75■□□□□ 0.27
HMGA2-209ENST00000539662 CCDC141Q6ZP82 1450 aa16.74■□□□□ 0.27
HMGA2-209ENST00000539662 PTPRMP28827 1452 aa16.73■□□□□ 0.27
HMGA2-209ENST00000539662 ARHGEF5Q12774 1597 aa16.73■□□□□ 0.27
HMGA2-209ENST00000539662 MIA2Q96PC5 1412 aa16.73■□□□□ 0.27
HMGA2-209ENST00000539662 PTPN23Q9H3S7 1636 aa16.73■□□□□ 0.27
HMGA2-209ENST00000539662 FER1L4A9Z1Z3 1794 aa16.72■□□□□ 0.27
HMGA2-209ENST00000539662 ADGBQ8N7X0 1667 aa16.72■□□□□ 0.27
HMGA2-209ENST00000539662 FGD6Q6ZV73 1430 aa16.7■□□□□ 0.26
HMGA2-209ENST00000539662 PLXNC1O60486 1568 aa16.7■□□□□ 0.26
HMGA2-209ENST00000539662 PLPPR3Q6T4P5 718 aa16.7■□□□□ 0.26
HMGA2-209ENST00000539662 AGLP35573 1532 aa16.7■□□□□ 0.26
HMGA2-209ENST00000539662 A2MP01023 1474 aa16.69■□□□□ 0.26
HMGA2-209ENST00000539662 RTEL1-TNFRSF6BF6WH68 1400 aa16.68■□□□□ 0.26
HMGA2-209ENST00000539662 TCOF1Q13428 1488 aaKnown RBP16.67■□□□□ 0.26
HMGA2-209ENST00000539662 ABCC5O15440 1437 aa16.66■□□□□ 0.26
HMGA2-209ENST00000539662 MAST1Q9Y2H9 1570 aa16.65■□□□□ 0.26
HMGA2-209ENST00000539662 CEBPAP49715 358 aaPredicted RBP16.65■□□□□ 0.26
HMGA2-209ENST00000539662 RSPH4AQ5TD94 716 aa16.65■□□□□ 0.26
HMGA2-209ENST00000539662 CROCC2H7BZ55 1655 aa16.64■□□□□ 0.25
HMGA2-209ENST00000539662 DNMT1P26358 1616 aaKnown RBP16.63■□□□□ 0.25
HMGA2-209ENST00000539662 TSPY4P0CV99 314 aa16.63■□□□□ 0.25
HMGA2-209ENST00000539662 TSPY10P0CW01 314 aa16.63■□□□□ 0.25
HMGA2-209ENST00000539662 DHX29Q7Z478 1369 aaKnown RBP16.63■□□□□ 0.25
HMGA2-209ENST00000539662 DAPK1P53355 1430 aa16.62■□□□□ 0.25
HMGA2-209ENST00000539662 FAM50AQ14320 339 aaKnown RBP16.6■□□□□ 0.25
HMGA2-209ENST00000539662 GGT6Q6P531 493 aa16.6■□□□□ 0.25
HMGA2-209ENST00000539662 C3P01024 1663 aa16.59■□□□□ 0.25
HMGA2-209ENST00000539662 CHIC2Q9UKJ5 165 aa16.59■□□□□ 0.25
HMGA2-209ENST00000539662 CLTCQ00610 1675 aaKnown RBP16.59■□□□□ 0.25
HMGA2-209ENST00000539662 SHANK2Q9UPX8 1470 aa16.57■□□□□ 0.24
HMGA2-209ENST00000539662 PTPRKQ15262 1439 aa16.57■□□□□ 0.24
HMGA2-209ENST00000539662 KIF3BO15066 747 aa16.57■□□□□ 0.24
HMGA2-209ENST00000539662 RRP7BPQ9NSQ0 103 aa16.56■□□□□ 0.24
HMGA2-209ENST00000539662 LMTK3Q96Q04 1460 aa16.54■□□□□ 0.24
HMGA2-209ENST00000539662 KIF15Q9NS87 1388 aa16.52■□□□□ 0.24
HMGA2-209ENST00000539662 ESF1Q9H501 851 aaKnown RBP16.52■□□□□ 0.24
HMGA2-209ENST00000539662 MROH2AA6NES4 1674 aa16.52■□□□□ 0.23
HMGA2-209ENST00000539662 MROH1Q8NDA8 1641 aa16.52■□□□□ 0.23
HMGA2-209ENST00000539662 ZMYM3Q14202 1370 aa16.51■□□□□ 0.23
HMGA2-209ENST00000539662 DUOX2Q9NRD8 1548 aa16.51■□□□□ 0.23
HMGA2-209ENST00000539662 NCOA1Q15788 1441 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms