RNA–Protein interactions for RNA: ENST00000539548.6

CDH13-204, Transcript of cadherin 13, humanhuman

TSL 2

Gene CDH13, Length 2,199 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13-204ENST00000539548 ANKRD30BQ9BXX2 1392 aa13.35□□□□□ -0.27
CDH13-204ENST00000539548 RPRD2Q5VT52 1461 aaKnown RBP13.35□□□□□ -0.27
CDH13-204ENST00000539548 POLR1AO95602 1720 aaPredicted RBP13.35□□□□□ -0.27
CDH13-204ENST00000539548 PRKRIP1Q9H875 184 aaPredicted RBP13.34□□□□□ -0.27
CDH13-204ENST00000539548 C11orf95C9JLR9 678 aaPredicted RBP13.34□□□□□ -0.27
CDH13-204ENST00000539548 DAPK1P53355 1430 aa13.33□□□□□ -0.28
CDH13-204ENST00000539548 CDK11AQ9UQ88 783 aaPredicted RBP13.33□□□□□ -0.28
CDH13-204ENST00000539548 DNMT1P26358 1616 aaKnown RBP13.33□□□□□ -0.28
CDH13-204ENST00000539548 CCDC184Q52MB2 194 aa13.32□□□□□ -0.28
CDH13-204ENST00000539548 TEX14Q8IWB6 1497 aa13.32□□□□□ -0.28
CDH13-204ENST00000539548 NBPF8Q3BBV2 869 aa13.31□□□□□ -0.28
CDH13-204ENST00000539548 PPP4R2Q9NY27 417 aa13.31□□□□□ -0.28
CDH13-204ENST00000539548 FANCIQ9NVI1 1328 aa13.31□□□□□ -0.28
CDH13-204ENST00000539548 SPATA31E1Q6ZUB1 1445 aa13.31□□□□□ -0.28
CDH13-204ENST00000539548 FOXD1Q16676 465 aa13.31□□□□□ -0.28
CDH13-204ENST00000539548 ABCC5O15440 1437 aa13.31□□□□□ -0.28
CDH13-204ENST00000539548 IRX6P78412 446 aaPredicted RBP13.3□□□□□ -0.28
CDH13-204ENST00000539548 ZBED9Q6R2W3 1325 aa13.29□□□□□ -0.28
CDH13-204ENST00000539548 MRC2Q9UBG0 1479 aa13.29□□□□□ -0.28
CDH13-204ENST00000539548 MSH5O43196 834 aa13.28□□□□□ -0.28
CDH13-204ENST00000539548 MRS2Q9HD23 443 aa13.27□□□□□ -0.28
CDH13-204ENST00000539548 KIF7Q2M1P5 1343 aa13.27□□□□□ -0.29
CDH13-204ENST00000539548 FAM9BQ8IZU0 186 aa13.26□□□□□ -0.29
CDH13-204ENST00000539548 KIAA0556O60303 1618 aa13.26□□□□□ -0.29
CDH13-204ENST00000539548 SLC4A1APQ9BWU0 796 aaKnown RBP13.25□□□□□ -0.29
CDH13-204ENST00000539548 KIAA0586Q9BVV6 1533 aa13.25□□□□□ -0.29
CDH13-204ENST00000539548 DISP1Q96F81 1524 aa13.25□□□□□ -0.29
CDH13-204ENST00000539548 NUP153P49790 1475 aaKnown RBP13.25□□□□□ -0.29
CDH13-204ENST00000539548 RAPGEF6Q8TEU7 1601 aa13.24□□□□□ -0.29
CDH13-204ENST00000539548 ARID3CA6NKF2 412 aa13.24□□□□□ -0.29
CDH13-204ENST00000539548 ZNF644Q9H582 1327 aaPredicted RBP13.23□□□□□ -0.29
CDH13-204ENST00000539548 PZPP20742 1482 aa13.23□□□□□ -0.29
CDH13-204ENST00000539548 ADGBQ8N7X0 1667 aa13.22□□□□□ -0.29
CDH13-204ENST00000539548 MBD5Q9P267 1494 aa13.22□□□□□ -0.29
CDH13-204ENST00000539548 ITSN2Q9NZM3 1697 aa13.2□□□□□ -0.3
CDH13-204ENST00000539548 IFT140Q96RY7 1462 aa13.2□□□□□ -0.3
CDH13-204ENST00000539548 DHX29Q7Z478 1369 aaKnown RBP13.19□□□□□ -0.3
CDH13-204ENST00000539548 ARID4BQ4LE39 1312 aaPredicted RBP13.19□□□□□ -0.3
CDH13-204ENST00000539548 TROQ12816 1431 aaPredicted RBP13.19□□□□□ -0.3
CDH13-204ENST00000539548 KIAA1107Q9UPP5 1409 aa13.19□□□□□ -0.3
CDH13-204ENST00000539548 ADGRL2O95490 1459 aa13.18□□□□□ -0.3
CDH13-204ENST00000539548 CAMSAP2Q08AD1 1489 aa13.18□□□□□ -0.3
CDH13-204ENST00000539548 SMG6Q86US8 1419 aaKnown RBP13.18□□□□□ -0.3
CDH13-204ENST00000539548 BCORL1Q5H9F3 1711 aa13.18□□□□□ -0.3
CDH13-204ENST00000539548 CROCC2H7BZ55 1655 aa13.17□□□□□ -0.3
CDH13-204ENST00000539548 ADCY10Q96PN6 1610 aa13.17□□□□□ -0.3
CDH13-204ENST00000539548 ZNF608Q9ULD9 1512 aaPredicted RBP13.16□□□□□ -0.3
CDH13-204ENST00000539548 KIF14Q15058 1648 aa13.16□□□□□ -0.3
CDH13-204ENST00000539548 B4GALNT3Q6L9W6 998 aa13.16□□□□□ -0.3
CDH13-204ENST00000539548 CFDP1Q9UEE9 299 aaPredicted RBP13.16□□□□□ -0.3
CDH13-204ENST00000539548 GPATCH8Q9UKJ3 1502 aaKnown RBP13.16□□□□□ -0.3
CDH13-204ENST00000539548 GRIN2AQ12879 1464 aa13.15□□□□□ -0.3
CDH13-204ENST00000539548 PRG4Q92954 1404 aaPredicted RBP13.15□□□□□ -0.3
CDH13-204ENST00000539548 KDM5CP41229 1560 aa13.15□□□□□ -0.3
CDH13-204ENST00000539548 USP47Q96K76 1375 aa13.15□□□□□ -0.3
CDH13-204ENST00000539548 BCL11AQ9H165 835 aa13.14□□□□□ -0.31
CDH13-204ENST00000539548 RNF123Q5XPI4 1314 aa13.14□□□□□ -0.31
CDH13-204ENST00000539548 ERICH6Q7L0X2 663 aa13.14□□□□□ -0.31
CDH13-204ENST00000539548 UHRF1BP1Q6BDS2 1440 aa13.13□□□□□ -0.31
CDH13-204ENST00000539548 ANKRD30AQ9BXX3 1397 aa13.13□□□□□ -0.31
CDH13-204ENST00000539548 PKD2Q13563 968 aa13.13□□□□□ -0.31
CDH13-204ENST00000539548 OSCARQ8IYS5 282 aa13.13□□□□□ -0.31
CDH13-204ENST00000539548 NUDCQ9Y266 331 aa13.13□□□□□ -0.31
CDH13-204ENST00000539548 ROCK2O75116 1388 aaKnown RBP13.12□□□□□ -0.31
CDH13-204ENST00000539548 RALGAPBQ86X10 1494 aa13.1□□□□□ -0.31
CDH13-204ENST00000539548 ANKRD50Q9ULJ7 1429 aa13.09□□□□□ -0.31
CDH13-204ENST00000539548 ARHGEF12Q9NZN5 1544 aa13.09□□□□□ -0.31
CDH13-204ENST00000539548 PNISRQ8TF01 805 aaKnown RBP13.09□□□□□ -0.31
CDH13-204ENST00000539548 EIF4G3O43432 1585 aaKnown RBP13.09□□□□□ -0.31
CDH13-204ENST00000539548 PLB1Q6P1J6 1458 aa13.08□□□□□ -0.31
CDH13-204ENST00000539548 MYT1LQ9UL68 1186 aa13.08□□□□□ -0.32
CDH13-204ENST00000539548 ZNF777Q9ULD5 760 aaPredicted RBP13.08□□□□□ -0.32
CDH13-204ENST00000539548 SHANK2Q9UPX8 1470 aa13.07□□□□□ -0.32
CDH13-204ENST00000539548 ZNF326Q5BKZ1 582 aaKnown RBP13.07□□□□□ -0.32
CDH13-204ENST00000539548 KDM5DQ9BY66 1539 aa13.07□□□□□ -0.32
CDH13-204ENST00000539548 CDC42BPAQ5VT25 1732 aa13.06□□□□□ -0.32
CDH13-204ENST00000539548 MAGI1Q96QZ7 1491 aaPredicted RBP13.06□□□□□ -0.32
CDH13-204ENST00000539548 KTN1Q86UP2 1357 aaKnown RBP13.06□□□□□ -0.32
CDH13-204ENST00000539548 POLR3GLQ9BT43 218 aa13.06□□□□□ -0.32
CDH13-204ENST00000539548 CEP170Q5SW79 1584 aa13.06□□□□□ -0.32
CDH13-204ENST00000539548 KIF15Q9NS87 1388 aa13.05□□□□□ -0.32
CDH13-204ENST00000539548 CARMIL2Q6F5E8 1435 aa13.05□□□□□ -0.32
CDH13-204ENST00000539548 TMC1Q8TDI8 760 aa13.05□□□□□ -0.32
CDH13-204ENST00000539548 NUP155O75694 1391 aa13.05□□□□□ -0.32
CDH13-204ENST00000539548 CARD11Q9BXL7 1154 aa13.04□□□□□ -0.32
CDH13-204ENST00000539548 LRPPRCP42704 1394 aaKnown RBP13.04□□□□□ -0.32
CDH13-204ENST00000539548 ABCC10Q5T3U5 1492 aa13.04□□□□□ -0.32
CDH13-204ENST00000539548 SYNJ2O15056 1496 aa13.03□□□□□ -0.32
CDH13-204ENST00000539548 CCDC136Q96JN2 1154 aa13.03□□□□□ -0.32
CDH13-204ENST00000539548 BRD4O60885 1362 aaPredicted RBP13.03□□□□□ -0.32
CDH13-204ENST00000539548 C9orf84Q5VXU9 1444 aa13.03□□□□□ -0.32
CDH13-204ENST00000539548 RALBP1Q15311 655 aa13.03□□□□□ -0.32
CDH13-204ENST00000539548 E9PCH4 1651 aa13.03□□□□□ -0.32
CDH13-204ENST00000539548 PLEKHD1A6NEE1 506 aa13.02□□□□□ -0.33
CDH13-204ENST00000539548 CHMP7Q8WUX9 453 aaPredicted RBP13.02□□□□□ -0.33
CDH13-204ENST00000539548 PTPRGP23470 1445 aa13.02□□□□□ -0.33
CDH13-204ENST00000539548 CNGB1Q14028 1251 aaPredicted RBP13.01□□□□□ -0.33
CDH13-204ENST00000539548 ABCA8O94911 1581 aa13.01□□□□□ -0.33
CDH13-204ENST00000539548 MYBBP1AQ9BQG0 1328 aaKnown RBP13.01□□□□□ -0.33
CDH13-204ENST00000539548 JPH4Q96JJ6 628 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms