RNA–Protein interactions for RNA: ENST00000539047.1

VAMP1-207, Transcript of vesicle associated membrane protein 1, humanhuman

TSL 4

Gene VAMP1, Length 565 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP1-207ENST00000539047 CDC42BPBQ9Y5S2 1711 aa23.33■■□□□ 1.33
VAMP1-207ENST00000539047 ARHGAP5Q13017 1502 aa23.32■■□□□ 1.32
VAMP1-207ENST00000539047 CFDP1Q9UEE9 299 aaPredicted RBP23.31■■□□□ 1.32
VAMP1-207ENST00000539047 ARAP3Q8WWN8 1544 aa23.29■■□□□ 1.32
VAMP1-207ENST00000539047 CAMSAP2Q08AD1 1489 aa23.29■■□□□ 1.32
VAMP1-207ENST00000539047 CFAP74Q9C0B2 1584 aa23.27■■□□□ 1.32
VAMP1-207ENST00000539047 DNMT1P26358 1616 aaKnown RBP23.24■■□□□ 1.31
VAMP1-207ENST00000539047 PLCH2O75038 1416 aa23.23■■□□□ 1.31
VAMP1-207ENST00000539047 PLEKHH2Q8IVE3 1493 aa23.23■■□□□ 1.31
VAMP1-207ENST00000539047 GLI2P10070 1586 aa23.22■■□□□ 1.31
VAMP1-207ENST00000539047 SAMD9LQ8IVG5 1584 aa23.22■■□□□ 1.31
VAMP1-207ENST00000539047 CROCC2H7BZ55 1655 aa23.22■■□□□ 1.31
VAMP1-207ENST00000539047 ZNF777Q9ULD5 760 aaPredicted RBP23.21■■□□□ 1.31
VAMP1-207ENST00000539047 DIP2BQ9P265 1576 aa23.2■■□□□ 1.3
VAMP1-207ENST00000539047 ITGAEP38570 1179 aa23.2■■□□□ 1.3
VAMP1-207ENST00000539047 KIF13AQ9H1H9 1805 aa23.19■■□□□ 1.3
VAMP1-207ENST00000539047 MAP3K4Q9Y6R4 1608 aa23.19■■□□□ 1.3
VAMP1-207ENST00000539047 FAM69CQ0P6D2 419 aa23.18■■□□□ 1.3
VAMP1-207ENST00000539047 ADGBQ8N7X0 1667 aa23.18■■□□□ 1.3
VAMP1-207ENST00000539047 ARHGEF5Q12774 1597 aa23.17■■□□□ 1.3
VAMP1-207ENST00000539047 EFCAB2Q5VUJ9 269 aa23.16■■□□□ 1.3
VAMP1-207ENST00000539047 FANCAO15360 1455 aa23.15■■□□□ 1.3
VAMP1-207ENST00000539047 DAPK1P53355 1430 aa23.15■■□□□ 1.3
VAMP1-207ENST00000539047 CD109Q6YHK3 1445 aa23.15■■□□□ 1.3
VAMP1-207ENST00000539047 ABCC1P33527 1531 aa23.13■■□□□ 1.29
VAMP1-207ENST00000539047 SYCP2Q9BX26 1530 aa23.13■■□□□ 1.29
VAMP1-207ENST00000539047 CCDC141Q6ZP82 1450 aa23.11■■□□□ 1.29
VAMP1-207ENST00000539047 ZNF644Q9H582 1327 aaPredicted RBP23.1■■□□□ 1.29
VAMP1-207ENST00000539047 KIAA1107Q9UPP5 1409 aa23.1■■□□□ 1.29
VAMP1-207ENST00000539047 SHANK2Q9UPX8 1470 aa23.1■■□□□ 1.29
VAMP1-207ENST00000539047 GCC2Q8IWJ2 1684 aa23.09■■□□□ 1.29
VAMP1-207ENST00000539047 RSPH4AQ5TD94 716 aa23.08■■□□□ 1.29
VAMP1-207ENST00000539047 ABCC5O15440 1437 aa23.07■■□□□ 1.28
VAMP1-207ENST00000539047 TSPOAP1O95153 1857 aa23.06■■□□□ 1.28
VAMP1-207ENST00000539047 AKNAQ7Z591 1439 aa23.06■■□□□ 1.28
VAMP1-207ENST00000539047 ADGRL1O94910 1474 aa23.05■■□□□ 1.28
VAMP1-207ENST00000539047 NEO1Q92859 1461 aa23.05■■□□□ 1.28
VAMP1-207ENST00000539047 TEX14Q8IWB6 1497 aa23.05■■□□□ 1.28
VAMP1-207ENST00000539047 MAST1Q9Y2H9 1570 aa23.03■■□□□ 1.28
VAMP1-207ENST00000539047 MBD5Q9P267 1494 aa23.03■■□□□ 1.28
VAMP1-207ENST00000539047 ROCK1Q13464 1354 aa23.02■■□□□ 1.28
VAMP1-207ENST00000539047 HFM1A2PYH4 1435 aa23.01■■□□□ 1.27
VAMP1-207ENST00000539047 C9orf84Q5VXU9 1444 aa23.01■■□□□ 1.27
VAMP1-207ENST00000539047 TSPY4P0CV99 314 aa23.01■■□□□ 1.27
VAMP1-207ENST00000539047 TSPY10P0CW01 314 aa23.01■■□□□ 1.27
VAMP1-207ENST00000539047 PTPRKQ15262 1439 aa23■■□□□ 1.27
VAMP1-207ENST00000539047 SETD5Q9C0A6 1442 aa23■■□□□ 1.27
VAMP1-207ENST00000539047 ADGRL2O95490 1459 aa23■■□□□ 1.27
VAMP1-207ENST00000539047 HNRNPMP52272 730 aaKnown RBP eCLIP23■■□□□ 1.27
VAMP1-207ENST00000539047 ANKRD30AQ9BXX3 1397 aa22.99■■□□□ 1.27
VAMP1-207ENST00000539047 PPRC1Q5VV67 1664 aaKnown RBP22.97■■□□□ 1.27
VAMP1-207ENST00000539047 CHIC2Q9UKJ5 165 aa22.97■■□□□ 1.27
VAMP1-207ENST00000539047 SCAPERQ9BY12 1400 aa22.96■■□□□ 1.27
VAMP1-207ENST00000539047 PLXNC1O60486 1568 aa22.96■■□□□ 1.27
VAMP1-207ENST00000539047 ZNF518AQ6AHZ1 1483 aa22.95■■□□□ 1.26
VAMP1-207ENST00000539047 ARHGEF12Q9NZN5 1544 aa22.95■■□□□ 1.26
VAMP1-207ENST00000539047 NAIPQ13075 1403 aa22.92■■□□□ 1.26
VAMP1-207ENST00000539047 RAB3GAP2Q9H2M9 1393 aa22.92■■□□□ 1.26
VAMP1-207ENST00000539047 ACIN1Q9UKV3 1341 aaKnown RBP22.91■■□□□ 1.26
VAMP1-207ENST00000539047 INO80Q9ULG1 1556 aaPredicted RBP22.91■■□□□ 1.26
VAMP1-207ENST00000539047 TRAPPC8Q9Y2L5 1435 aa22.91■■□□□ 1.26
VAMP1-207ENST00000539047 RRP7BPQ9NSQ0 103 aa22.9■■□□□ 1.26
VAMP1-207ENST00000539047 DENND4BO75064 1496 aaPredicted RBP22.9■■□□□ 1.26
VAMP1-207ENST00000539047 NCOA1Q15788 1441 aa22.9■■□□□ 1.26
VAMP1-207ENST00000539047 POGZQ7Z3K3 1410 aa22.9■■□□□ 1.26
VAMP1-207ENST00000539047 ATP7AQ04656 1500 aa22.89■■□□□ 1.26
VAMP1-207ENST00000539047 ZFYVE16Q7Z3T8 1539 aa22.89■■□□□ 1.26
VAMP1-207ENST00000539047 RTEL1-TNFRSF6BF6WH68 1400 aa22.88■■□□□ 1.25
VAMP1-207ENST00000539047 KDM5CP41229 1560 aa22.88■■□□□ 1.25
VAMP1-207ENST00000539047 HECW2Q9P2P5 1572 aa22.88■■□□□ 1.25
VAMP1-207ENST00000539047 RICTORQ6R327 1708 aa22.88■■□□□ 1.25
VAMP1-207ENST00000539047 SPAG9O60271 1321 aaKnown RBP22.87■■□□□ 1.25
VAMP1-207ENST00000539047 HRCP23327 699 aa22.86■■□□□ 1.25
VAMP1-207ENST00000539047 KIF15Q9NS87 1388 aa22.86■■□□□ 1.25
VAMP1-207ENST00000539047 KDM6BO15054 1643 aa22.85■■□□□ 1.25
VAMP1-207ENST00000539047 DUOX2Q9NRD8 1548 aa22.84■■□□□ 1.25
VAMP1-207ENST00000539047 MYT1LQ9UL68 1186 aa22.84■■□□□ 1.25
VAMP1-207ENST00000539047 CCER1Q8TC90 406 aaPredicted RBP22.82■■□□□ 1.24
VAMP1-207ENST00000539047 ANKRD50Q9ULJ7 1429 aa22.81■■□□□ 1.24
VAMP1-207ENST00000539047 KIDINS220Q9ULH0 1771 aa22.81■■□□□ 1.24
VAMP1-207ENST00000539047 AFAP1Q8N556 730 aa22.8■■□□□ 1.24
VAMP1-207ENST00000539047 ZMYM4Q5VZL5 1548 aa22.78■■□□□ 1.24
VAMP1-207ENST00000539047 MLH3Q9UHC1 1453 aa22.78■■□□□ 1.24
VAMP1-207ENST00000539047 FRMPD1Q5SYB0 1578 aa22.77■■□□□ 1.24
VAMP1-207ENST00000539047 ERBINQ96RT1 1412 aa22.77■■□□□ 1.24
VAMP1-207ENST00000539047 EIF2AK4Q9P2K8 1649 aaKnown RBP22.75■■□□□ 1.23
VAMP1-207ENST00000539047 ABCA6Q8N139 1617 aa22.72■■□□□ 1.23
VAMP1-207ENST00000539047 TRIM52Q96A61 297 aa22.71■■□□□ 1.23
VAMP1-207ENST00000539047 MAGI2Q86UL8 1455 aa22.71■■□□□ 1.23
VAMP1-207ENST00000539047 UNC13BO14795 1591 aa22.71■■□□□ 1.23
VAMP1-207ENST00000539047 DHX57Q6P158 1386 aaKnown RBP22.7■■□□□ 1.22
VAMP1-207ENST00000539047 RAPGEF3O95398 923 aa22.69■■□□□ 1.22
VAMP1-207ENST00000539047 DIP2CQ9Y2E4 1556 aa22.68■■□□□ 1.22
VAMP1-207ENST00000539047 CLSPNQ9HAW4 1339 aa22.67■■□□□ 1.22
VAMP1-207ENST00000539047 A2MP01023 1474 aa22.66■■□□□ 1.22
VAMP1-207ENST00000539047 KDM4FA0A1W2PPD8 638 aa22.66■■□□□ 1.22
VAMP1-207ENST00000539047 KDM5DQ9BY66 1539 aa22.66■■□□□ 1.22
VAMP1-207ENST00000539047 COL17A1Q9UMD9 1497 aaPredicted RBP22.66■■□□□ 1.22
VAMP1-207ENST00000539047 ZEB1P37275 1124 aaPredicted RBP22.65■■□□□ 1.22
VAMP1-207ENST00000539047 BCORL1Q5H9F3 1711 aa22.64■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 130.6 ms