RNA–Protein interactions for RNA: ENST00000538235.2

CHFR-216, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 687 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-216ENST00000538235 GPATCH8Q9UKJ3 1502 aaKnown RBP20.79■□□□□ 0.92
CHFR-216ENST00000538235 CDK11AQ9UQ88 783 aaPredicted RBP20.79■□□□□ 0.92
CHFR-216ENST00000538235 FANCAO15360 1455 aa20.79■□□□□ 0.92
CHFR-216ENST00000538235 ITSN2Q9NZM3 1697 aa20.79■□□□□ 0.92
CHFR-216ENST00000538235 NEO1Q92859 1461 aa20.78■□□□□ 0.92
CHFR-216ENST00000538235 ARHGAP5Q13017 1502 aa20.77■□□□□ 0.92
CHFR-216ENST00000538235 ABCC1P33527 1531 aa20.75■□□□□ 0.91
CHFR-216ENST00000538235 ARHGEF12Q9NZN5 1544 aa20.74■□□□□ 0.91
CHFR-216ENST00000538235 AKNAQ7Z591 1439 aa20.72■□□□□ 0.91
CHFR-216ENST00000538235 ADGRL1O94910 1474 aa20.69■□□□□ 0.9
CHFR-216ENST00000538235 SYCP2Q9BX26 1530 aa20.68■□□□□ 0.9
CHFR-216ENST00000538235 SIGLEC1Q9BZZ2 1709 aa20.68■□□□□ 0.9
CHFR-216ENST00000538235 PHLDB1Q86UU1 1377 aa20.66■□□□□ 0.9
CHFR-216ENST00000538235 ZMYM4Q5VZL5 1548 aa20.66■□□□□ 0.9
CHFR-216ENST00000538235 KDM5CP41229 1560 aa20.65■□□□□ 0.9
CHFR-216ENST00000538235 POGZQ7Z3K3 1410 aa20.65■□□□□ 0.9
CHFR-216ENST00000538235 CCNB3Q8WWL7 1395 aa20.65■□□□□ 0.9
CHFR-216ENST00000538235 DENND4BO75064 1496 aaPredicted RBP20.62■□□□□ 0.89
CHFR-216ENST00000538235 SCAPERQ9BY12 1400 aa20.62■□□□□ 0.89
CHFR-216ENST00000538235 TRAPPC8Q9Y2L5 1435 aa20.62■□□□□ 0.89
CHFR-216ENST00000538235 RAPGEF3O95398 923 aa20.62■□□□□ 0.89
CHFR-216ENST00000538235 CAMSAP2Q08AD1 1489 aa20.62■□□□□ 0.89
CHFR-216ENST00000538235 ZNF644Q9H582 1327 aaPredicted RBP20.61■□□□□ 0.89
CHFR-216ENST00000538235 ARHGEF40Q8TER5 1519 aa20.61■□□□□ 0.89
CHFR-216ENST00000538235 MYOM3Q5VTT5 1437 aa20.61■□□□□ 0.89
CHFR-216ENST00000538235 KIDINS220Q9ULH0 1771 aa20.59■□□□□ 0.89
CHFR-216ENST00000538235 ABCA6Q8N139 1617 aa20.59■□□□□ 0.89
CHFR-216ENST00000538235 PTPN23Q9H3S7 1636 aa20.58■□□□□ 0.89
CHFR-216ENST00000538235 EFCAB2Q5VUJ9 269 aa20.58■□□□□ 0.89
CHFR-216ENST00000538235 MBD5Q9P267 1494 aa20.57■□□□□ 0.88
CHFR-216ENST00000538235 PPARGC1BQ86YN6 1023 aaKnown RBP20.57■□□□□ 0.88
CHFR-216ENST00000538235 HECW2Q9P2P5 1572 aa20.57■□□□□ 0.88
CHFR-216ENST00000538235 INO80Q9ULG1 1556 aaPredicted RBP20.57■□□□□ 0.88
CHFR-216ENST00000538235 YEATS2Q9ULM3 1422 aa20.56■□□□□ 0.88
CHFR-216ENST00000538235 CROCC2H7BZ55 1655 aa20.55■□□□□ 0.88
CHFR-216ENST00000538235 DIP2CQ9Y2E4 1556 aa20.55■□□□□ 0.88
CHFR-216ENST00000538235 CFDP1Q9UEE9 299 aaPredicted RBP20.53■□□□□ 0.88
CHFR-216ENST00000538235 ZNF777Q9ULD5 760 aaPredicted RBP20.53■□□□□ 0.88
CHFR-216ENST00000538235 ZNF518AQ6AHZ1 1483 aa20.53■□□□□ 0.88
CHFR-216ENST00000538235 ZFYVE16Q7Z3T8 1539 aa20.53■□□□□ 0.88
CHFR-216ENST00000538235 FGD6Q6ZV73 1430 aa20.53■□□□□ 0.88
CHFR-216ENST00000538235 ARHGEF5Q12774 1597 aa20.52■□□□□ 0.88
CHFR-216ENST00000538235 APLP2Q06481 763 aa20.52■□□□□ 0.88
CHFR-216ENST00000538235 KIAA1107Q9UPP5 1409 aa20.52■□□□□ 0.87
CHFR-216ENST00000538235 TCOF1Q13428 1488 aaKnown RBP20.51■□□□□ 0.87
CHFR-216ENST00000538235 ADGBQ8N7X0 1667 aa20.51■□□□□ 0.87
CHFR-216ENST00000538235 MIA2Q96PC5 1412 aa20.5■□□□□ 0.87
CHFR-216ENST00000538235 PLEKHH2Q8IVE3 1493 aa20.5■□□□□ 0.87
CHFR-216ENST00000538235 AFAP1Q8N556 730 aa20.49■□□□□ 0.87
CHFR-216ENST00000538235 HNRNPMP52272 730 aaKnown RBP eCLIP20.48■□□□□ 0.87
CHFR-216ENST00000538235 DNMT1P26358 1616 aaKnown RBP20.48■□□□□ 0.87
CHFR-216ENST00000538235 ATP7AQ04656 1500 aa20.48■□□□□ 0.87
CHFR-216ENST00000538235 MLH3Q9UHC1 1453 aa20.46■□□□□ 0.87
CHFR-216ENST00000538235 CCDC141Q6ZP82 1450 aa20.45■□□□□ 0.86
CHFR-216ENST00000538235 MAGI2Q86UL8 1455 aa20.43■□□□□ 0.86
CHFR-216ENST00000538235 MAST1Q9Y2H9 1570 aa20.43■□□□□ 0.86
CHFR-216ENST00000538235 PLXNC1O60486 1568 aa20.41■□□□□ 0.86
CHFR-216ENST00000538235 REREQ9P2R6 1566 aa20.41■□□□□ 0.86
CHFR-216ENST00000538235 BCORL1Q5H9F3 1711 aa20.41■□□□□ 0.86
CHFR-216ENST00000538235 ABCC5O15440 1437 aa20.39■□□□□ 0.85
CHFR-216ENST00000538235 ADAMTSL3P82987 1691 aa20.37■□□□□ 0.85
CHFR-216ENST00000538235 DAPK1P53355 1430 aa20.36■□□□□ 0.85
CHFR-216ENST00000538235 ATP10AO60312 1499 aa20.36■□□□□ 0.85
CHFR-216ENST00000538235 C9orf84Q5VXU9 1444 aa20.36■□□□□ 0.85
CHFR-216ENST00000538235 PTPRKQ15262 1439 aa20.35■□□□□ 0.85
CHFR-216ENST00000538235 RRBP1Q9P2E9 1410 aaKnown RBP20.35■□□□□ 0.85
CHFR-216ENST00000538235 SHANK2Q9UPX8 1470 aa20.34■□□□□ 0.85
CHFR-216ENST00000538235 MADDQ8WXG6 1647 aa20.33■□□□□ 0.84
CHFR-216ENST00000538235 SPAG9O60271 1321 aaKnown RBP20.32■□□□□ 0.84
CHFR-216ENST00000538235 RTEL1-TNFRSF6BF6WH68 1400 aa20.31■□□□□ 0.84
CHFR-216ENST00000538235 FER1L4A9Z1Z3 1794 aa20.29■□□□□ 0.84
CHFR-216ENST00000538235 AGLP35573 1532 aa20.29■□□□□ 0.84
CHFR-216ENST00000538235 KDM4FA0A1W2PPD8 638 aa20.28■□□□□ 0.84
CHFR-216ENST00000538235 A2MP01023 1474 aa20.28■□□□□ 0.84
CHFR-216ENST00000538235 RIMS1Q86UR5 1692 aaKnown RBP20.28■□□□□ 0.84
CHFR-216ENST00000538235 ADGRL2O95490 1459 aa20.26■□□□□ 0.83
CHFR-216ENST00000538235 MROH1Q8NDA8 1641 aa20.26■□□□□ 0.83
CHFR-216ENST00000538235 FAM50AQ14320 339 aaKnown RBP20.24■□□□□ 0.83
CHFR-216ENST00000538235 RNF17Q9BXT8 1623 aaKnown RBP20.22■□□□□ 0.83
CHFR-216ENST00000538235 EIF2AK4Q9P2K8 1649 aaKnown RBP20.22■□□□□ 0.83
CHFR-216ENST00000538235 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.21■□□□□ 0.83
CHFR-216ENST00000538235 MYT1LQ9UL68 1186 aa20.2■□□□□ 0.82
CHFR-216ENST00000538235 DEPDC5O75140 1603 aa20.19■□□□□ 0.82
CHFR-216ENST00000538235 DUOX2Q9NRD8 1548 aa20.18■□□□□ 0.82
CHFR-216ENST00000538235 RSPH4AQ5TD94 716 aa20.18■□□□□ 0.82
CHFR-216ENST00000538235 CLTCQ00610 1675 aaKnown RBP20.18■□□□□ 0.82
CHFR-216ENST00000538235 NCOA1Q15788 1441 aa20.18■□□□□ 0.82
CHFR-216ENST00000538235 GCC2Q8IWJ2 1684 aa20.17■□□□□ 0.82
CHFR-216ENST00000538235 CHIC2Q9UKJ5 165 aa20.17■□□□□ 0.82
CHFR-216ENST00000538235 DHX29Q7Z478 1369 aaKnown RBP20.17■□□□□ 0.82
CHFR-216ENST00000538235 CEP152O94986 1710 aa20.16■□□□□ 0.82
CHFR-216ENST00000538235 KIF15Q9NS87 1388 aa20.16■□□□□ 0.82
CHFR-216ENST00000538235 C3P01024 1663 aa20.16■□□□□ 0.82
CHFR-216ENST00000538235 ARID4BQ4LE39 1312 aaPredicted RBP20.14■□□□□ 0.81
CHFR-216ENST00000538235 MLECQ14165 292 aa20.14■□□□□ 0.81
CHFR-216ENST00000538235 TSPY4P0CV99 314 aa20.13■□□□□ 0.81
CHFR-216ENST00000538235 TSPY10P0CW01 314 aa20.13■□□□□ 0.81
CHFR-216ENST00000538235 MROH2AA6NES4 1674 aa20.12■□□□□ 0.81
CHFR-216ENST00000538235 PRDM15P57071 1507 aaPredicted RBP20.12■□□□□ 0.81
CHFR-216ENST00000538235 PTPRMP28827 1452 aa20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms