RNA–Protein interactions for RNA: ENST00000538064.1

LRRK1-211, Transcript of leucine rich repeat kinase 1, humanhuman

TSL 5

Gene LRRK1, Length 493 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1-211ENST00000538064 ZFYVE16Q7Z3T8 1539 aa24.26■■□□□ 1.47
LRRK1-211ENST00000538064 PREX2Q70Z35 1606 aa24.26■■□□□ 1.47
LRRK1-211ENST00000538064 CDC42BPBQ9Y5S2 1711 aa24.26■■□□□ 1.47
LRRK1-211ENST00000538064 MAGI2Q86UL8 1455 aa24.25■■□□□ 1.47
LRRK1-211ENST00000538064 ARHGAP5Q13017 1502 aa24.24■■□□□ 1.47
LRRK1-211ENST00000538064 SCAPERQ9BY12 1400 aa24.22■■□□□ 1.47
LRRK1-211ENST00000538064 HECW2Q9P2P5 1572 aa24.2■■□□□ 1.47
LRRK1-211ENST00000538064 CDC42BPAQ5VT25 1732 aa24.2■■□□□ 1.46
LRRK1-211ENST00000538064 SIGLEC1Q9BZZ2 1709 aa24.2■■□□□ 1.46
LRRK1-211ENST00000538064 MADDQ8WXG6 1647 aa24.2■■□□□ 1.46
LRRK1-211ENST00000538064 EFCAB2Q5VUJ9 269 aa24.19■■□□□ 1.46
LRRK1-211ENST00000538064 YEATS2Q9ULM3 1422 aa24.18■■□□□ 1.46
LRRK1-211ENST00000538064 KDM5CP41229 1560 aa24.17■■□□□ 1.46
LRRK1-211ENST00000538064 ZNF518AQ6AHZ1 1483 aa24.15■■□□□ 1.46
LRRK1-211ENST00000538064 ABCC1P33527 1531 aa24.15■■□□□ 1.46
LRRK1-211ENST00000538064 ITSN2Q9NZM3 1697 aa24.15■■□□□ 1.46
LRRK1-211ENST00000538064 PTPRMP28827 1452 aa24.14■■□□□ 1.46
LRRK1-211ENST00000538064 RIMS1Q86UR5 1692 aaKnown RBP24.13■■□□□ 1.45
LRRK1-211ENST00000538064 CEP162Q5TB80 1403 aa24.12■■□□□ 1.45
LRRK1-211ENST00000538064 ARID4BQ4LE39 1312 aaPredicted RBP24.11■■□□□ 1.45
LRRK1-211ENST00000538064 FER1L4A9Z1Z3 1794 aa24.08■■□□□ 1.45
LRRK1-211ENST00000538064 C9orf84Q5VXU9 1444 aa24.08■■□□□ 1.44
LRRK1-211ENST00000538064 ATP10AO60312 1499 aa24.07■■□□□ 1.44
LRRK1-211ENST00000538064 DIP2CQ9Y2E4 1556 aa24.06■■□□□ 1.44
LRRK1-211ENST00000538064 ARHGEF12Q9NZN5 1544 aa24.05■■□□□ 1.44
LRRK1-211ENST00000538064 SAMD9LQ8IVG5 1584 aa24.04■■□□□ 1.44
LRRK1-211ENST00000538064 ABCA6Q8N139 1617 aa24.04■■□□□ 1.44
LRRK1-211ENST00000538064 EHBP1L1Q8N3D4 1523 aa24.04■■□□□ 1.44
LRRK1-211ENST00000538064 REREQ9P2R6 1566 aa24.03■■□□□ 1.44
LRRK1-211ENST00000538064 MLH3Q9UHC1 1453 aa24.02■■□□□ 1.44
LRRK1-211ENST00000538064 GPATCH8Q9UKJ3 1502 aaKnown RBP24.02■■□□□ 1.44
LRRK1-211ENST00000538064 TRAPPC8Q9Y2L5 1435 aa24■■□□□ 1.43
LRRK1-211ENST00000538064 MTUS2Q5JR59 1369 aa23.99■■□□□ 1.43
LRRK1-211ENST00000538064 KIDINS220Q9ULH0 1771 aa23.98■■□□□ 1.43
LRRK1-211ENST00000538064 AFAP1Q8N556 730 aa23.98■■□□□ 1.43
LRRK1-211ENST00000538064 SYCP2Q9BX26 1530 aa23.98■■□□□ 1.43
LRRK1-211ENST00000538064 TIAM1Q13009 1591 aa23.97■■□□□ 1.43
LRRK1-211ENST00000538064 CCNB3Q8WWL7 1395 aa23.93■■□□□ 1.42
LRRK1-211ENST00000538064 PLEKHH2Q8IVE3 1493 aa23.93■■□□□ 1.42
LRRK1-211ENST00000538064 AGLP35573 1532 aa23.91■■□□□ 1.42
LRRK1-211ENST00000538064 SUPT6HQ7KZ85 1726 aaKnown RBP23.91■■□□□ 1.42
LRRK1-211ENST00000538064 LMTK3Q96Q04 1460 aa23.91■■□□□ 1.42
LRRK1-211ENST00000538064 KIAA1107Q9UPP5 1409 aa23.9■■□□□ 1.42
LRRK1-211ENST00000538064 INO80Q9ULG1 1556 aaPredicted RBP23.9■■□□□ 1.42
LRRK1-211ENST00000538064 MLECQ14165 292 aa23.89■■□□□ 1.41
LRRK1-211ENST00000538064 VPS8Q8N3P4 1428 aa23.88■■□□□ 1.41
LRRK1-211ENST00000538064 MYT1LQ9UL68 1186 aa23.87■■□□□ 1.41
LRRK1-211ENST00000538064 ATP7AQ04656 1500 aa23.86■■□□□ 1.41
LRRK1-211ENST00000538064 CFDP1Q9UEE9 299 aaPredicted RBP23.86■■□□□ 1.41
LRRK1-211ENST00000538064 ZNF777Q9ULD5 760 aaPredicted RBP23.86■■□□□ 1.41
LRRK1-211ENST00000538064 PREX1Q8TCU6 1659 aa23.83■■□□□ 1.41
LRRK1-211ENST00000538064 LOC105371045A0A1W2PR82 267 aa23.83■■□□□ 1.41
LRRK1-211ENST00000538064 NCOA2Q15596 1464 aa23.82■■□□□ 1.4
LRRK1-211ENST00000538064 PLXNC1O60486 1568 aa23.82■■□□□ 1.4
LRRK1-211ENST00000538064 C3P01024 1663 aa23.79■■□□□ 1.4
LRRK1-211ENST00000538064 ADGBQ8N7X0 1667 aa23.79■■□□□ 1.4
LRRK1-211ENST00000538064 HNRNPMP52272 730 aaKnown RBP eCLIP23.79■■□□□ 1.4
LRRK1-211ENST00000538064 SPAG9O60271 1321 aaKnown RBP23.79■■□□□ 1.4
LRRK1-211ENST00000538064 MAP3K1Q13233 1512 aa23.77■■□□□ 1.4
LRRK1-211ENST00000538064 LRRC9Q6ZRR7 1453 aa23.76■■□□□ 1.39
LRRK1-211ENST00000538064 MBD5Q9P267 1494 aa23.76■■□□□ 1.39
LRRK1-211ENST00000538064 PLPPR3Q6T4P5 718 aa23.76■■□□□ 1.39
LRRK1-211ENST00000538064 MROH2AA6NES4 1674 aa23.75■■□□□ 1.39
LRRK1-211ENST00000538064 CAMSAP2Q08AD1 1489 aa23.75■■□□□ 1.39
LRRK1-211ENST00000538064 SETD1BQ9UPS6 1966 aaKnown RBP23.72■■□□□ 1.39
LRRK1-211ENST00000538064 ZNF644Q9H582 1327 aaPredicted RBP23.72■■□□□ 1.39
LRRK1-211ENST00000538064 A2MP01023 1474 aa23.72■■□□□ 1.39
LRRK1-211ENST00000538064 CNTLNQ9NXG0 1405 aa23.71■■□□□ 1.39
LRRK1-211ENST00000538064 CCDC141Q6ZP82 1450 aa23.7■■□□□ 1.38
LRRK1-211ENST00000538064 ARHGEF5Q12774 1597 aa23.69■■□□□ 1.38
LRRK1-211ENST00000538064 RTEL1-TNFRSF6BF6WH68 1400 aa23.68■■□□□ 1.38
LRRK1-211ENST00000538064 CLTCQ00610 1675 aaKnown RBP23.67■■□□□ 1.38
LRRK1-211ENST00000538064 CEBPAP49715 358 aaPredicted RBP23.66■■□□□ 1.38
LRRK1-211ENST00000538064 HSPA2P54652 639 aa23.64■■□□□ 1.37
LRRK1-211ENST00000538064 UHRF1BP1Q6BDS2 1440 aa23.64■■□□□ 1.37
LRRK1-211ENST00000538064 ESF1Q9H501 851 aaKnown RBP23.63■■□□□ 1.37
LRRK1-211ENST00000538064 MAST1Q9Y2H9 1570 aa23.59■■□□□ 1.37
LRRK1-211ENST00000538064 STRCQ7RTU9 1775 aa23.58■■□□□ 1.37
LRRK1-211ENST00000538064 ILDR1Q86SU0 546 aaPredicted RBP23.58■■□□□ 1.37
LRRK1-211ENST00000538064 NPATQ14207 1427 aa23.58■■□□□ 1.36
LRRK1-211ENST00000538064 MYOM3Q5VTT5 1437 aa23.58■■□□□ 1.36
LRRK1-211ENST00000538064 KANK4Q5T7N3 995 aaPredicted RBP23.57■■□□□ 1.36
LRRK1-211ENST00000538064 RSPH4AQ5TD94 716 aa23.57■■□□□ 1.36
LRRK1-211ENST00000538064 MIA2Q96PC5 1412 aa23.57■■□□□ 1.36
LRRK1-211ENST00000538064 DHX29Q7Z478 1369 aaKnown RBP23.55■■□□□ 1.36
LRRK1-211ENST00000538064 FAM135AQ9P2D6 1515 aa23.55■■□□□ 1.36
LRRK1-211ENST00000538064 MYO3AQ8NEV4 1616 aa23.54■■□□□ 1.36
LRRK1-211ENST00000538064 ZNF142P52746 1687 aaPredicted RBP23.54■■□□□ 1.36
LRRK1-211ENST00000538064 ZMYM3Q14202 1370 aa23.53■■□□□ 1.36
LRRK1-211ENST00000538064 CROCC2H7BZ55 1655 aa23.51■■□□□ 1.35
LRRK1-211ENST00000538064 PPP6R1Q9UPN7 881 aa23.5■■□□□ 1.35
LRRK1-211ENST00000538064 KDM5DQ9BY66 1539 aa23.49■■□□□ 1.35
LRRK1-211ENST00000538064 GGT6Q6P531 493 aa23.49■■□□□ 1.35
LRRK1-211ENST00000538064 RNF17Q9BXT8 1623 aaKnown RBP23.48■■□□□ 1.35
LRRK1-211ENST00000538064 EIF2AK4Q9P2K8 1649 aaKnown RBP23.48■■□□□ 1.35
LRRK1-211ENST00000538064 PTPRKQ15262 1439 aa23.48■■□□□ 1.35
LRRK1-211ENST00000538064 PTPN23Q9H3S7 1636 aa23.48■■□□□ 1.35
LRRK1-211ENST00000538064 TSPY4P0CV99 314 aa23.45■■□□□ 1.34
LRRK1-211ENST00000538064 TSPY10P0CW01 314 aa23.45■■□□□ 1.34
LRRK1-211ENST00000538064 APLP2Q06481 763 aa23.45■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms