RNA–Protein interactions for RNA: ENST00000537047.5

CCDC7-208, Transcript of coiled-coil domain containing 7, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC7, Length 657 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC7-208ENST00000537047 DOK7Q18PE1 504 aa16.72■□□□□ 0.27
CCDC7-208ENST00000537047 HOXB1P14653 301 aaPredicted RBP16.71■□□□□ 0.27
CCDC7-208ENST00000537047 ZNF710Q8N1W2 664 aa16.71■□□□□ 0.27
CCDC7-208ENST00000537047 SPNS2Q8IVW8 549 aa16.63■□□□□ 0.25
CCDC7-208ENST00000537047 PPP1R37O75864 691 aa16.62■□□□□ 0.25
CCDC7-208ENST00000537047 KRTAP3-3Q9BYR6 98 aa16.62■□□□□ 0.25
CCDC7-208ENST00000537047 KRTAP3-2Q9BYR7 98 aa16.62■□□□□ 0.25
CCDC7-208ENST00000537047 RIMBP2O15034 1052 aa16.6■□□□□ 0.25
CCDC7-208ENST00000537047 CHGAP10645 457 aaKnown RBP16.59■□□□□ 0.25
CCDC7-208ENST00000537047 HS6ST3Q8IZP7 471 aa16.59■□□□□ 0.25
CCDC7-208ENST00000537047 GPR153Q6NV75 609 aa16.57■□□□□ 0.24
CCDC7-208ENST00000537047 MMRN1Q13201 1228 aa16.56■□□□□ 0.24
CCDC7-208ENST00000537047 ZSWIM6Q9HCJ5 1215 aa16.56■□□□□ 0.24
CCDC7-208ENST00000537047 ERBB3P21860 1342 aa16.55■□□□□ 0.24
CCDC7-208ENST00000537047 KIF3CO14782 793 aa16.53■□□□□ 0.24
CCDC7-208ENST00000537047 C2orf72A6NCS6 295 aa16.5■□□□□ 0.23
CCDC7-208ENST00000537047 NKX1-1Q15270 411 aaPredicted RBP16.48■□□□□ 0.23
CCDC7-208ENST00000537047 VARS2Q5ST30 1063 aaKnown RBP16.47■□□□□ 0.23
CCDC7-208ENST00000537047 ARSIQ5FYB1 569 aa16.46■□□□□ 0.23
CCDC7-208ENST00000537047 KHSRPQ92945 711 aaKnown RBP eCLIP16.44■□□□□ 0.22
CCDC7-208ENST00000537047 ZNF687Q8N1G0 1237 aa16.36■□□□□ 0.21
CCDC7-208ENST00000537047 TMC2Q8TDI7 906 aa16.36■□□□□ 0.21
CCDC7-208ENST00000537047 DNAJC5Q9H3Z4 198 aa16.35■□□□□ 0.21
CCDC7-208ENST00000537047 ZNF316A6NFI3 1004 aaPredicted RBP16.32■□□□□ 0.2
CCDC7-208ENST00000537047 DCAF8L2P0C7V8 631 aa16.32■□□□□ 0.2
CCDC7-208ENST00000537047 SLC34A2O95436 690 aa16.31■□□□□ 0.2
CCDC7-208ENST00000537047 NUDT7P0C024 238 aa16.28■□□□□ 0.2
CCDC7-208ENST00000537047 PCDHGA4Q9Y5G9 962 aa16.27■□□□□ 0.2
CCDC7-208ENST00000537047 GTPBP6O43824 516 aaPredicted RBP16.2■□□□□ 0.18
CCDC7-208ENST00000537047 GPHNQ9NQX3 736 aaPredicted RBP16.2■□□□□ 0.18
CCDC7-208ENST00000537047 LHX6Q9UPM6 363 aa16.2■□□□□ 0.18
CCDC7-208ENST00000537047 FOXK1P85037 733 aa16.19■□□□□ 0.18
CCDC7-208ENST00000537047 DSG2Q14126 1118 aa16.19■□□□□ 0.18
CCDC7-208ENST00000537047 PLPP6Q8IY26 295 aa16.18■□□□□ 0.18
CCDC7-208ENST00000537047 PTCD2Q8WV60 388 aaKnown RBP16.14■□□□□ 0.17
CCDC7-208ENST00000537047 KDM4FA0A1W2PPD8 638 aa16.12■□□□□ 0.17
CCDC7-208ENST00000537047 POTEEQ6S8J3 1075 aa16.12■□□□□ 0.17
CCDC7-208ENST00000537047 RYDENQ9NUL5 291 aaKnown RBP16.12■□□□□ 0.17
CCDC7-208ENST00000537047 ANKRD13DQ6ZTN6 518 aa16.1■□□□□ 0.17
CCDC7-208ENST00000537047 RNF166Q96A37 237 aaPredicted RBP16.09■□□□□ 0.17
CCDC7-208ENST00000537047 LSM11P83369 360 aaKnown RBP eCLIP16.08■□□□□ 0.16
CCDC7-208ENST00000537047 CRISPLD2Q9H0B8 497 aa16.08■□□□□ 0.16
CCDC7-208ENST00000537047 MYT1LQ9UL68 1186 aa16.08■□□□□ 0.16
CCDC7-208ENST00000537047 NCKAP5LQ9HCH0 1330 aa16.08■□□□□ 0.16
CCDC7-208ENST00000537047 AXIN2Q9Y2T1 843 aa16.05■□□□□ 0.16
CCDC7-208ENST00000537047 PBX2P40425 430 aa16.04■□□□□ 0.16
CCDC7-208ENST00000537047 PTGER2P43116 358 aa16■□□□□ 0.15
CCDC7-208ENST00000537047 PPP1R15BQ5SWA1 713 aa16■□□□□ 0.15
CCDC7-208ENST00000537047 UPF1Q92900 1129 aaKnown RBP eCLIP16■□□□□ 0.15
CCDC7-208ENST00000537047 RTN4Q9NQC3 1192 aaKnown RBP15.99■□□□□ 0.15
CCDC7-208ENST00000537047 PSDA5PKW4 1024 aaPredicted RBP15.97■□□□□ 0.15
CCDC7-208ENST00000537047 CADPS2Q86UW7 1296 aa15.97■□□□□ 0.15
CCDC7-208ENST00000537047 TBC1D12O60347 775 aa15.96■□□□□ 0.15
CCDC7-208ENST00000537047 PDE4AP27815 886 aa15.95■□□□□ 0.14
CCDC7-208ENST00000537047 OXER1Q8TDS5 423 aa15.95■□□□□ 0.14
CCDC7-208ENST00000537047 LARP6Q9BRS8 491 aaKnown RBP15.95■□□□□ 0.14
CCDC7-208ENST00000537047 ARHGAP33O14559 1287 aa15.93■□□□□ 0.14
CCDC7-208ENST00000537047 AMER1Q5JTC6 1135 aaPredicted RBP15.9■□□□□ 0.14
CCDC7-208ENST00000537047 PSEN2P49810 448 aa15.87■□□□□ 0.13
CCDC7-208ENST00000537047 DDX27Q96GQ7 796 aaKnown RBP15.87■□□□□ 0.13
CCDC7-208ENST00000537047 PPP4R3BQ5MIZ7 849 aa15.86■□□□□ 0.13
CCDC7-208ENST00000537047 DMRTA1Q5VZB9 504 aa15.86■□□□□ 0.13
CCDC7-208ENST00000537047 ADGRD1Q6QNK2 874 aa15.86■□□□□ 0.13
CCDC7-208ENST00000537047 BBXQ8WY36 941 aaPredicted RBP15.85■□□□□ 0.13
CCDC7-208ENST00000537047 MFSD10Q14728 455 aa15.84■□□□□ 0.13
CCDC7-208ENST00000537047 EMILIN3Q9NT22 766 aa15.8■□□□□ 0.12
CCDC7-208ENST00000537047 TK2O00142 265 aa15.78■□□□□ 0.12
CCDC7-208ENST00000537047 HRO43593 1189 aa15.77■□□□□ 0.12
CCDC7-208ENST00000537047 ZNF454Q8N9F8 522 aa15.76■□□□□ 0.11
CCDC7-208ENST00000537047 EVI5O60447 810 aa15.75■□□□□ 0.11
CCDC7-208ENST00000537047 KCNK17Q96T54 332 aa15.75■□□□□ 0.11
CCDC7-208ENST00000537047 ANO8Q9HCE9 1232 aaPredicted RBP15.75■□□□□ 0.11
CCDC7-208ENST00000537047 FOSBP53539 338 aa15.72■□□□□ 0.11
CCDC7-208ENST00000537047 MAP3K9P80192 1104 aa15.7■□□□□ 0.1
CCDC7-208ENST00000537047 BCL2L12Q9HB09 334 aa15.7■□□□□ 0.1
CCDC7-208ENST00000537047 SPRYD3Q8NCJ5 442 aa15.69■□□□□ 0.1
CCDC7-208ENST00000537047 KCNH8Q96L42 1107 aa15.66■□□□□ 0.1
CCDC7-208ENST00000537047 JPH4Q96JJ6 628 aa15.65■□□□□ 0.1
CCDC7-208ENST00000537047 VPS9D1Q9Y2B5 631 aa15.65■□□□□ 0.1
CCDC7-208ENST00000537047 PAXIP1Q6ZW49 1069 aaPredicted RBP15.64■□□□□ 0.09
CCDC7-208ENST00000537047 CFAP44Q96MT7 982 aa15.64■□□□□ 0.09
CCDC7-208ENST00000537047 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.63■□□□□ 0.09
CCDC7-208ENST00000537047 HCSTQ9UBK5 93 aa15.62■□□□□ 0.09
CCDC7-208ENST00000537047 CAMK2BQ13554 666 aa15.61■□□□□ 0.09
CCDC7-208ENST00000537047 ADAM33Q9BZ11 813 aa15.61■□□□□ 0.09
CCDC7-208ENST00000537047 PTPREP23469 700 aa15.6■□□□□ 0.09
CCDC7-208ENST00000537047 ZDHHC16Q969W1 377 aa15.6■□□□□ 0.09
CCDC7-208ENST00000537047 DPYSL4O14531 572 aa15.59■□□□□ 0.09
CCDC7-208ENST00000537047 SLC4A5Q9BY07 1137 aa15.59■□□□□ 0.09
CCDC7-208ENST00000537047 KCTD12Q96CX2 325 aaKnown RBP15.56■□□□□ 0.08
CCDC7-208ENST00000537047 STAC3Q96MF2 364 aa15.56■□□□□ 0.08
CCDC7-208ENST00000537047 PCDHGA10Q9Y5H3 936 aa15.56■□□□□ 0.08
CCDC7-208ENST00000537047 ZBED2Q9BTP6 218 aa15.55■□□□□ 0.08
CCDC7-208ENST00000537047 BHMG1C9JSJ3 638 aaPredicted RBP15.53■□□□□ 0.08
CCDC7-208ENST00000537047 PLA2G2EQ9NZK7 142 aa15.51■□□□□ 0.07
CCDC7-208ENST00000537047 COL9A1P20849 921 aa15.46■□□□□ 0.07
CCDC7-208ENST00000537047 PHF14O94880 888 aa15.45■□□□□ 0.06
CCDC7-208ENST00000537047 TYW1BQ6NUM6 668 aa15.44■□□□□ 0.06
CCDC7-208ENST00000537047 DDX12PQ92771 950 aa15.44■□□□□ 0.06
CCDC7-208ENST00000537047 PPP1R3GB7ZBB8 358 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms