RNA–Protein interactions for RNA: ENST00000536717.5

TNFRSF1A-209, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 2

Gene TNFRSF1A, Length 1,503 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-209ENST00000536717 PREX2Q70Z35 1606 aa28.7■■■□□ 2.18
TNFRSF1A-209ENST00000536717 SCAPERQ9BY12 1400 aa28.7■■■□□ 2.18
TNFRSF1A-209ENST00000536717 EFCAB2Q5VUJ9 269 aa28.69■■■□□ 2.18
TNFRSF1A-209ENST00000536717 CDC42BPAQ5VT25 1732 aa28.69■■■□□ 2.18
TNFRSF1A-209ENST00000536717 ARHGEF40Q8TER5 1519 aa28.69■■■□□ 2.18
TNFRSF1A-209ENST00000536717 POGZQ7Z3K3 1410 aa28.66■■■□□ 2.18
TNFRSF1A-209ENST00000536717 ZFYVE16Q7Z3T8 1539 aa28.6■■■□□ 2.17
TNFRSF1A-209ENST00000536717 YEATS2Q9ULM3 1422 aa28.59■■■□□ 2.17
TNFRSF1A-209ENST00000536717 MAGI2Q86UL8 1455 aa28.59■■■□□ 2.17
TNFRSF1A-209ENST00000536717 ADAMTSL3P82987 1691 aa28.57■■■□□ 2.16
TNFRSF1A-209ENST00000536717 BCORL1Q5H9F3 1711 aa28.57■■■□□ 2.16
TNFRSF1A-209ENST00000536717 SIGLEC1Q9BZZ2 1709 aa28.56■■■□□ 2.16
TNFRSF1A-209ENST00000536717 ABCC1P33527 1531 aa28.55■■■□□ 2.16
TNFRSF1A-209ENST00000536717 MTUS2Q5JR59 1369 aa28.55■■■□□ 2.16
TNFRSF1A-209ENST00000536717 KDM5CP41229 1560 aa28.55■■■□□ 2.16
TNFRSF1A-209ENST00000536717 ZNF518AQ6AHZ1 1483 aa28.55■■■□□ 2.16
TNFRSF1A-209ENST00000536717 ITSN2Q9NZM3 1697 aa28.54■■■□□ 2.16
TNFRSF1A-209ENST00000536717 GPATCH8Q9UKJ3 1502 aaKnown RBP28.54■■■□□ 2.16
TNFRSF1A-209ENST00000536717 EHBP1L1Q8N3D4 1523 aa28.53■■■□□ 2.16
TNFRSF1A-209ENST00000536717 ARHGEF12Q9NZN5 1544 aa28.52■■■□□ 2.16
TNFRSF1A-209ENST00000536717 VPS8Q8N3P4 1428 aa28.51■■■□□ 2.15
TNFRSF1A-209ENST00000536717 SAMD9LQ8IVG5 1584 aa28.49■■■□□ 2.15
TNFRSF1A-209ENST00000536717 AFAP1Q8N556 730 aa28.49■■■□□ 2.15
TNFRSF1A-209ENST00000536717 ARID4BQ4LE39 1312 aaPredicted RBP28.49■■■□□ 2.15
TNFRSF1A-209ENST00000536717 HECW2Q9P2P5 1572 aa28.47■■■□□ 2.15
TNFRSF1A-209ENST00000536717 TRAPPC8Q9Y2L5 1435 aa28.46■■■□□ 2.15
TNFRSF1A-209ENST00000536717 MADDQ8WXG6 1647 aa28.46■■■□□ 2.15
TNFRSF1A-209ENST00000536717 TIAM1Q13009 1591 aa28.46■■■□□ 2.15
TNFRSF1A-209ENST00000536717 CCNB3Q8WWL7 1395 aa28.44■■■□□ 2.14
TNFRSF1A-209ENST00000536717 ATP10AO60312 1499 aa28.43■■■□□ 2.14
TNFRSF1A-209ENST00000536717 C9orf84Q5VXU9 1444 aa28.41■■■□□ 2.14
TNFRSF1A-209ENST00000536717 ZNF777Q9ULD5 760 aaPredicted RBP28.41■■■□□ 2.14
TNFRSF1A-209ENST00000536717 MLH3Q9UHC1 1453 aa28.41■■■□□ 2.14
TNFRSF1A-209ENST00000536717 SYCP2Q9BX26 1530 aa28.41■■■□□ 2.14
TNFRSF1A-209ENST00000536717 DIP2CQ9Y2E4 1556 aa28.41■■■□□ 2.14
TNFRSF1A-209ENST00000536717 PTPRMP28827 1452 aa28.4■■■□□ 2.14
TNFRSF1A-209ENST00000536717 SUPT6HQ7KZ85 1726 aaKnown RBP28.4■■■□□ 2.14
TNFRSF1A-209ENST00000536717 ABCA6Q8N139 1617 aa28.4■■■□□ 2.14
TNFRSF1A-209ENST00000536717 KIDINS220Q9ULH0 1771 aa28.39■■■□□ 2.14
TNFRSF1A-209ENST00000536717 CFDP1Q9UEE9 299 aaPredicted RBP28.38■■■□□ 2.13
TNFRSF1A-209ENST00000536717 RIMS1Q86UR5 1692 aaKnown RBP28.38■■■□□ 2.13
TNFRSF1A-209ENST00000536717 NCOA2Q15596 1464 aa28.35■■■□□ 2.13
TNFRSF1A-209ENST00000536717 KIAA1107Q9UPP5 1409 aa28.34■■■□□ 2.13
TNFRSF1A-209ENST00000536717 PLEKHH2Q8IVE3 1493 aa28.34■■■□□ 2.13
TNFRSF1A-209ENST00000536717 MYT1LQ9UL68 1186 aa28.33■■■□□ 2.13
TNFRSF1A-209ENST00000536717 REREQ9P2R6 1566 aa28.33■■■□□ 2.13
TNFRSF1A-209ENST00000536717 FER1L4A9Z1Z3 1794 aa28.33■■■□□ 2.13
TNFRSF1A-209ENST00000536717 MAP3K1Q13233 1512 aa28.32■■■□□ 2.12
TNFRSF1A-209ENST00000536717 LRRC9Q6ZRR7 1453 aa28.32■■■□□ 2.12
TNFRSF1A-209ENST00000536717 HNRNPMP52272 730 aaKnown RBP eCLIP28.32■■■□□ 2.12
TNFRSF1A-209ENST00000536717 MLECQ14165 292 aa28.28■■■□□ 2.12
TNFRSF1A-209ENST00000536717 ZNF644Q9H582 1327 aaPredicted RBP28.28■■■□□ 2.12
TNFRSF1A-209ENST00000536717 INO80Q9ULG1 1556 aaPredicted RBP28.25■■■□□ 2.11
TNFRSF1A-209ENST00000536717 KANK4Q5T7N3 995 aaPredicted RBP28.24■■■□□ 2.11
TNFRSF1A-209ENST00000536717 MBD5Q9P267 1494 aa28.24■■■□□ 2.11
TNFRSF1A-209ENST00000536717 ATP7AQ04656 1500 aa28.23■■■□□ 2.11
TNFRSF1A-209ENST00000536717 AGLP35573 1532 aa28.23■■■□□ 2.11
TNFRSF1A-209ENST00000536717 SPAG9O60271 1321 aaKnown RBP28.22■■■□□ 2.11
TNFRSF1A-209ENST00000536717 CAMSAP2Q08AD1 1489 aa28.19■■■□□ 2.1
TNFRSF1A-209ENST00000536717 PLXNC1O60486 1568 aa28.13■■■□□ 2.09
TNFRSF1A-209ENST00000536717 ADGBQ8N7X0 1667 aa28.12■■■□□ 2.09
TNFRSF1A-209ENST00000536717 PLPPR3Q6T4P5 718 aa28.11■■■□□ 2.09
TNFRSF1A-209ENST00000536717 CCDC141Q6ZP82 1450 aa28.11■■■□□ 2.09
TNFRSF1A-209ENST00000536717 ARHGEF5Q12774 1597 aa28.09■■■□□ 2.09
TNFRSF1A-209ENST00000536717 A2MP01023 1474 aa28.08■■■□□ 2.09
TNFRSF1A-209ENST00000536717 LMTK3Q96Q04 1460 aa28.08■■■□□ 2.09
TNFRSF1A-209ENST00000536717 RTEL1-TNFRSF6BF6WH68 1400 aa28.08■■■□□ 2.09
TNFRSF1A-209ENST00000536717 APLP2Q06481 763 aa28.08■■■□□ 2.08
TNFRSF1A-209ENST00000536717 MYOM3Q5VTT5 1437 aa28.07■■■□□ 2.08
TNFRSF1A-209ENST00000536717 C3P01024 1663 aa28.05■■■□□ 2.08
TNFRSF1A-209ENST00000536717 RSPH4AQ5TD94 716 aa28.04■■■□□ 2.08
TNFRSF1A-209ENST00000536717 SETD1BQ9UPS6 1966 aaKnown RBP28.04■■■□□ 2.08
TNFRSF1A-209ENST00000536717 MIA2Q96PC5 1412 aa28.04■■■□□ 2.08
TNFRSF1A-209ENST00000536717 CEBPAP49715 358 aaPredicted RBP28.03■■■□□ 2.08
TNFRSF1A-209ENST00000536717 PREX1Q8TCU6 1659 aa27.99■■■□□ 2.07
TNFRSF1A-209ENST00000536717 MROH2AA6NES4 1674 aa27.98■■■□□ 2.07
TNFRSF1A-209ENST00000536717 CNTLNQ9NXG0 1405 aa27.96■■■□□ 2.07
TNFRSF1A-209ENST00000536717 ESF1Q9H501 851 aaKnown RBP27.96■■■□□ 2.07
TNFRSF1A-209ENST00000536717 MAST1Q9Y2H9 1570 aa27.95■■■□□ 2.07
TNFRSF1A-209ENST00000536717 DHX29Q7Z478 1369 aaKnown RBP27.95■■■□□ 2.06
TNFRSF1A-209ENST00000536717 CLTCQ00610 1675 aaKnown RBP27.94■■■□□ 2.06
TNFRSF1A-209ENST00000536717 PTPN23Q9H3S7 1636 aa27.94■■■□□ 2.06
TNFRSF1A-209ENST00000536717 TSPY4P0CV99 314 aa27.92■■■□□ 2.06
TNFRSF1A-209ENST00000536717 TSPY10P0CW01 314 aa27.92■■■□□ 2.06
TNFRSF1A-209ENST00000536717 HSPA2P54652 639 aa27.9■■■□□ 2.06
TNFRSF1A-209ENST00000536717 GGT6Q6P531 493 aa27.9■■■□□ 2.06
TNFRSF1A-209ENST00000536717 CROCC2H7BZ55 1655 aa27.88■■■□□ 2.05
TNFRSF1A-209ENST00000536717 FGD6Q6ZV73 1430 aa27.88■■■□□ 2.05
TNFRSF1A-209ENST00000536717 ZMYM3Q14202 1370 aa27.86■■■□□ 2.05
TNFRSF1A-209ENST00000536717 TCOF1Q13428 1488 aaKnown RBP27.85■■■□□ 2.05
TNFRSF1A-209ENST00000536717 UHRF1BP1Q6BDS2 1440 aa27.84■■■□□ 2.05
TNFRSF1A-209ENST00000536717 PPP6R1Q9UPN7 881 aa27.83■■■□□ 2.05
TNFRSF1A-209ENST00000536717 KIF3BO15066 747 aa27.82■■■□□ 2.04
TNFRSF1A-209ENST00000536717 DNMT1P26358 1616 aaKnown RBP27.82■■■□□ 2.04
TNFRSF1A-209ENST00000536717 ABCC5O15440 1437 aa27.81■■■□□ 2.04
TNFRSF1A-209ENST00000536717 SHANK2Q9UPX8 1470 aa27.8■■■□□ 2.04
TNFRSF1A-209ENST00000536717 NPATQ14207 1427 aa27.79■■■□□ 2.04
TNFRSF1A-209ENST00000536717 DAPK1P53355 1430 aa27.78■■■□□ 2.04
TNFRSF1A-209ENST00000536717 EIF2AK4Q9P2K8 1649 aaKnown RBP27.77■■■□□ 2.04
TNFRSF1A-209ENST00000536717 RNF17Q9BXT8 1623 aaKnown RBP27.76■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms