RNA–Protein interactions for RNA: ENST00000535685.1

CCDC60-202, Transcript of coiled-coil domain containing 60, humanhuman

TSL 3

Gene CCDC60, Length 446 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60-202ENST00000535685 RAPGEF3O95398 923 aa17.6■□□□□ 0.41
CCDC60-202ENST00000535685 PLCH2O75038 1416 aa17.6■□□□□ 0.41
CCDC60-202ENST00000535685 DENND4BO75064 1496 aaPredicted RBP17.59■□□□□ 0.41
CCDC60-202ENST00000535685 TROQ12816 1431 aaPredicted RBP17.59■□□□□ 0.41
CCDC60-202ENST00000535685 MYO5CQ9NQX4 1742 aa17.58■□□□□ 0.4
CCDC60-202ENST00000535685 CCDC18Q5T9S5 1454 aa17.57■□□□□ 0.4
CCDC60-202ENST00000535685 ATP1B4Q9UN42 357 aaPredicted RBP17.56■□□□□ 0.4
CCDC60-202ENST00000535685 KIF14Q15058 1648 aa17.56■□□□□ 0.4
CCDC60-202ENST00000535685 ZMYM4Q5VZL5 1548 aa17.56■□□□□ 0.4
CCDC60-202ENST00000535685 CLIP1P30622 1438 aa17.55■□□□□ 0.4
CCDC60-202ENST00000535685 PCF11O94913 1555 aaKnown RBP17.55■□□□□ 0.4
CCDC60-202ENST00000535685 FYCO1Q9BQS8 1478 aa17.55■□□□□ 0.4
CCDC60-202ENST00000535685 ARHGEF40Q8TER5 1519 aa17.53■□□□□ 0.4
CCDC60-202ENST00000535685 MAGI2Q86UL8 1455 aa17.53■□□□□ 0.4
CCDC60-202ENST00000535685 RNF216Q9NWF9 866 aaPredicted RBP17.53■□□□□ 0.4
CCDC60-202ENST00000535685 ADAMTSL3P82987 1691 aa17.52■□□□□ 0.4
CCDC60-202ENST00000535685 EFCAB2Q5VUJ9 269 aa17.51■□□□□ 0.39
CCDC60-202ENST00000535685 SCAPERQ9BY12 1400 aa17.49■□□□□ 0.39
CCDC60-202ENST00000535685 BCORL1Q5H9F3 1711 aa17.49■□□□□ 0.39
CCDC60-202ENST00000535685 POGZQ7Z3K3 1410 aa17.48■□□□□ 0.39
CCDC60-202ENST00000535685 CDC42BPBQ9Y5S2 1711 aa17.48■□□□□ 0.39
CCDC60-202ENST00000535685 ZBTB22O15209 634 aa17.47■□□□□ 0.39
CCDC60-202ENST00000535685 ZFYVE16Q7Z3T8 1539 aa17.46■□□□□ 0.39
CCDC60-202ENST00000535685 PREX2Q70Z35 1606 aa17.45■□□□□ 0.38
CCDC60-202ENST00000535685 ARHGAP5Q13017 1502 aa17.44■□□□□ 0.38
CCDC60-202ENST00000535685 CDC42BPAQ5VT25 1732 aa17.43■□□□□ 0.38
CCDC60-202ENST00000535685 KDM5CP41229 1560 aa17.42■□□□□ 0.38
CCDC60-202ENST00000535685 YEATS2Q9ULM3 1422 aa17.42■□□□□ 0.38
CCDC60-202ENST00000535685 DMRT2Q9Y5R5 561 aa17.42■□□□□ 0.38
CCDC60-202ENST00000535685 ZNF518AQ6AHZ1 1483 aa17.42■□□□□ 0.38
CCDC60-202ENST00000535685 PTPRMP28827 1452 aa17.41■□□□□ 0.38
CCDC60-202ENST00000535685 CEP162Q5TB80 1403 aa17.39■□□□□ 0.38
CCDC60-202ENST00000535685 SIGLEC1Q9BZZ2 1709 aa17.39■□□□□ 0.37
CCDC60-202ENST00000535685 HECW2Q9P2P5 1572 aa17.39■□□□□ 0.37
CCDC60-202ENST00000535685 ARID4BQ4LE39 1312 aaPredicted RBP17.39■□□□□ 0.37
CCDC60-202ENST00000535685 MADDQ8WXG6 1647 aa17.39■□□□□ 0.37
CCDC60-202ENST00000535685 ATP10AO60312 1499 aa17.38■□□□□ 0.37
CCDC60-202ENST00000535685 ABCC1P33527 1531 aa17.37■□□□□ 0.37
CCDC60-202ENST00000535685 ITSN2Q9NZM3 1697 aa17.36■□□□□ 0.37
CCDC60-202ENST00000535685 C9orf84Q5VXU9 1444 aa17.36■□□□□ 0.37
CCDC60-202ENST00000535685 MLH3Q9UHC1 1453 aa17.36■□□□□ 0.37
CCDC60-202ENST00000535685 ARHGEF12Q9NZN5 1544 aa17.35■□□□□ 0.37
CCDC60-202ENST00000535685 GPATCH8Q9UKJ3 1502 aaKnown RBP17.35■□□□□ 0.37
CCDC60-202ENST00000535685 REREQ9P2R6 1566 aa17.35■□□□□ 0.37
CCDC60-202ENST00000535685 AFAP1Q8N556 730 aa17.34■□□□□ 0.37
CCDC60-202ENST00000535685 RIMS1Q86UR5 1692 aaKnown RBP17.32■□□□□ 0.36
CCDC60-202ENST00000535685 TRAPPC8Q9Y2L5 1435 aa17.31■□□□□ 0.36
CCDC60-202ENST00000535685 MTUS2Q5JR59 1369 aa17.31■□□□□ 0.36
CCDC60-202ENST00000535685 DIP2CQ9Y2E4 1556 aa17.31■□□□□ 0.36
CCDC60-202ENST00000535685 KIAA1107Q9UPP5 1409 aa17.3■□□□□ 0.36
CCDC60-202ENST00000535685 FER1L4A9Z1Z3 1794 aa17.3■□□□□ 0.36
CCDC60-202ENST00000535685 SAMD9LQ8IVG5 1584 aa17.3■□□□□ 0.36
CCDC60-202ENST00000535685 EHBP1L1Q8N3D4 1523 aa17.3■□□□□ 0.36
CCDC60-202ENST00000535685 HOXD11P31277 338 aaPredicted RBP17.29■□□□□ 0.36
CCDC60-202ENST00000535685 FOXD4L1Q9NU39 408 aa17.29■□□□□ 0.36
CCDC60-202ENST00000535685 KIDINS220Q9ULH0 1771 aa17.29■□□□□ 0.36
CCDC60-202ENST00000535685 PLEKHH2Q8IVE3 1493 aa17.29■□□□□ 0.36
CCDC60-202ENST00000535685 AGLP35573 1532 aa17.28■□□□□ 0.36
CCDC60-202ENST00000535685 ABCA6Q8N139 1617 aa17.28■□□□□ 0.36
CCDC60-202ENST00000535685 CCNB3Q8WWL7 1395 aa17.28■□□□□ 0.36
CCDC60-202ENST00000535685 SETD1BQ9UPS6 1966 aaKnown RBP17.27■□□□□ 0.36
CCDC60-202ENST00000535685 CFDP1Q9UEE9 299 aaPredicted RBP17.25■□□□□ 0.35
CCDC60-202ENST00000535685 TIAM1Q13009 1591 aa17.24■□□□□ 0.35
CCDC60-202ENST00000535685 LOC105371045A0A1W2PR82 267 aa17.24■□□□□ 0.35
CCDC60-202ENST00000535685 SYCP2Q9BX26 1530 aa17.24■□□□□ 0.35
CCDC60-202ENST00000535685 VPS8Q8N3P4 1428 aa17.23■□□□□ 0.35
CCDC60-202ENST00000535685 LMTK3Q96Q04 1460 aa17.22■□□□□ 0.35
CCDC60-202ENST00000535685 SUPT6HQ7KZ85 1726 aaKnown RBP17.21■□□□□ 0.35
CCDC60-202ENST00000535685 MLECQ14165 292 aa17.21■□□□□ 0.35
CCDC60-202ENST00000535685 ZNF777Q9ULD5 760 aaPredicted RBP17.21■□□□□ 0.35
CCDC60-202ENST00000535685 MAP3K1Q13233 1512 aa17.21■□□□□ 0.34
CCDC60-202ENST00000535685 MYT1LQ9UL68 1186 aa17.2■□□□□ 0.34
CCDC60-202ENST00000535685 INO80Q9ULG1 1556 aaPredicted RBP17.19■□□□□ 0.34
CCDC60-202ENST00000535685 HNRNPMP52272 730 aaKnown RBP eCLIP17.19■□□□□ 0.34
CCDC60-202ENST00000535685 SPAG9O60271 1321 aaKnown RBP17.19■□□□□ 0.34
CCDC60-202ENST00000535685 ATP7AQ04656 1500 aa17.18■□□□□ 0.34
CCDC60-202ENST00000535685 NCOA2Q15596 1464 aa17.18■□□□□ 0.34
CCDC60-202ENST00000535685 MBD5Q9P267 1494 aa17.18■□□□□ 0.34
CCDC60-202ENST00000535685 PLXNC1O60486 1568 aa17.15■□□□□ 0.34
CCDC60-202ENST00000535685 RTEL1-TNFRSF6BF6WH68 1400 aa17.14■□□□□ 0.33
CCDC60-202ENST00000535685 PREX1Q8TCU6 1659 aa17.14■□□□□ 0.33
CCDC60-202ENST00000535685 LRRC9Q6ZRR7 1453 aa17.14■□□□□ 0.33
CCDC60-202ENST00000535685 ADGBQ8N7X0 1667 aa17.13■□□□□ 0.33
CCDC60-202ENST00000535685 CNTLNQ9NXG0 1405 aa17.13■□□□□ 0.33
CCDC60-202ENST00000535685 RSPH4AQ5TD94 716 aa17.13■□□□□ 0.33
CCDC60-202ENST00000535685 ZNF644Q9H582 1327 aaPredicted RBP17.13■□□□□ 0.33
CCDC60-202ENST00000535685 C3P01024 1663 aa17.12■□□□□ 0.33
CCDC60-202ENST00000535685 A2MP01023 1474 aa17.12■□□□□ 0.33
CCDC60-202ENST00000535685 MROH2AA6NES4 1674 aa17.11■□□□□ 0.33
CCDC60-202ENST00000535685 CAMSAP2Q08AD1 1489 aa17.09■□□□□ 0.33
CCDC60-202ENST00000535685 ARHGEF5Q12774 1597 aa17.09■□□□□ 0.33
CCDC60-202ENST00000535685 CCDC141Q6ZP82 1450 aa17.08■□□□□ 0.32
CCDC60-202ENST00000535685 CEBPAP49715 358 aaPredicted RBP17.08■□□□□ 0.32
CCDC60-202ENST00000535685 ESF1Q9H501 851 aaKnown RBP17.07■□□□□ 0.32
CCDC60-202ENST00000535685 UHRF1BP1Q6BDS2 1440 aa17.04■□□□□ 0.32
CCDC60-202ENST00000535685 MIA2Q96PC5 1412 aa17.04■□□□□ 0.32
CCDC60-202ENST00000535685 DHX29Q7Z478 1369 aaKnown RBP17.04■□□□□ 0.32
CCDC60-202ENST00000535685 HSPA2P54652 639 aa17.04■□□□□ 0.32
CCDC60-202ENST00000535685 KANK4Q5T7N3 995 aaPredicted RBP17.04■□□□□ 0.32
CCDC60-202ENST00000535685 NPATQ14207 1427 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms