RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 KCNV2Q8TDN2 545 aa11.25□□□□□ -0.61
USP28-202ENST00000535607 IRX5P78411 483 aaPredicted RBP11.24□□□□□ -0.61
USP28-202ENST00000535607 BOLA1Q9Y3E2 137 aa11.24□□□□□ -0.61
USP28-202ENST00000535607 DPY19L2Q6NUT2 758 aa11.23□□□□□ -0.61
USP28-202ENST00000535607 MICALL2Q8IY33 904 aa11.23□□□□□ -0.61
USP28-202ENST00000535607 PDCD7Q8N8D1 485 aaKnown RBP11.22□□□□□ -0.61
USP28-202ENST00000535607 CRISPLD2Q9H0B8 497 aa11.22□□□□□ -0.61
USP28-202ENST00000535607 NCKAP5LQ9HCH0 1330 aa11.22□□□□□ -0.61
USP28-202ENST00000535607 C7P10643 843 aa11.21□□□□□ -0.61
USP28-202ENST00000535607 SP7Q8TDD2 431 aaPredicted RBP11.21□□□□□ -0.61
USP28-202ENST00000535607 ARHGEF1Q92888 912 aaKnown RBP11.21□□□□□ -0.61
USP28-202ENST00000535607 TPRNQ4KMQ1 711 aa11.2□□□□□ -0.62
USP28-202ENST00000535607 RB1CC1Q8TDY2 1594 aa11.2□□□□□ -0.62
USP28-202ENST00000535607 MFSD10Q14728 455 aa11.19□□□□□ -0.62
USP28-202ENST00000535607 PPP1R15BQ5SWA1 713 aa11.18□□□□□ -0.62
USP28-202ENST00000535607 GPHNQ9NQX3 736 aaPredicted RBP11.18□□□□□ -0.62
USP28-202ENST00000535607 METRNQ9UJH8 293 aa11.16□□□□□ -0.62
USP28-202ENST00000535607 C3orf67Q6ZVT6 689 aa11.14□□□□□ -0.63
USP28-202ENST00000535607 PELP1Q8IZL8 1130 aaKnown RBP11.12□□□□□ -0.63
USP28-202ENST00000535607 SMYD5Q6GMV2 418 aa11.11□□□□□ -0.63
USP28-202ENST00000535607 TMEM121BQ9BXQ6 578 aaPredicted RBP11.1□□□□□ -0.63
USP28-202ENST00000535607 PRKCSHP14314 528 aaPredicted RBP11.09□□□□□ -0.63
USP28-202ENST00000535607 COLQQ9Y215 455 aaPredicted RBP11.09□□□□□ -0.63
USP28-202ENST00000535607 FOXK1P85037 733 aa11.08□□□□□ -0.64
USP28-202ENST00000535607 DSG2Q14126 1118 aa11.08□□□□□ -0.64
USP28-202ENST00000535607 CAMK2BQ13554 666 aa11.07□□□□□ -0.64
USP28-202ENST00000535607 C2orf72A6NCS6 295 aa11.06□□□□□ -0.64
USP28-202ENST00000535607 PLPP6Q8IY26 295 aa11.06□□□□□ -0.64
USP28-202ENST00000535607 LMOD2Q6P5Q4 547 aa11.03□□□□□ -0.64
USP28-202ENST00000535607 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.03□□□□□ -0.64
USP28-202ENST00000535607 ARIH1Q9Y4X5 557 aaPredicted RBP11.03□□□□□ -0.64
USP28-202ENST00000535607 SEMA3EO15041 775 aa11.02□□□□□ -0.65
USP28-202ENST00000535607 ZNF316A6NFI3 1004 aaPredicted RBP11.01□□□□□ -0.65
USP28-202ENST00000535607 MAP3K9P80192 1104 aa11.01□□□□□ -0.65
USP28-202ENST00000535607 SPDYE16A6NNV3 312 aaPredicted RBP11□□□□□ -0.65
USP28-202ENST00000535607 DPYSL4O14531 572 aa11□□□□□ -0.65
USP28-202ENST00000535607 POTEIP0CG38 1075 aa11□□□□□ -0.65
USP28-202ENST00000535607 TESPA1A2RU30 521 aaPredicted RBP10.98□□□□□ -0.65
USP28-202ENST00000535607 KIF3CO14782 793 aa10.98□□□□□ -0.65
USP28-202ENST00000535607 TBC1D12O60347 775 aa10.97□□□□□ -0.65
USP28-202ENST00000535607 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.97□□□□□ -0.65
USP28-202ENST00000535607 POTEFA5A3E0 1075 aa10.96□□□□□ -0.65
USP28-202ENST00000535607 UPF1Q92900 1129 aaKnown RBP eCLIP10.96□□□□□ -0.65
USP28-202ENST00000535607 EMILIN3Q9NT22 766 aa10.95□□□□□ -0.66
USP28-202ENST00000535607 SCRIBQ14160 1630 aa10.94□□□□□ -0.66
USP28-202ENST00000535607 PDIA6Q15084 440 aa10.92□□□□□ -0.66
USP28-202ENST00000535607 TMEM92Q6UXU6 159 aa10.91□□□□□ -0.66
USP28-202ENST00000535607 UNC13AQ9UPW8 1703 aa10.91□□□□□ -0.66
USP28-202ENST00000535607 SCUBE2Q9NQ36 999 aa10.89□□□□□ -0.67
USP28-202ENST00000535607 SHROOM4Q9ULL8 1493 aa10.88□□□□□ -0.67
USP28-202ENST00000535607 MAMSTRQ6ZN01 415 aa10.87□□□□□ -0.67
USP28-202ENST00000535607 GRXCR2A6NFK2 248 aa10.86□□□□□ -0.67
USP28-202ENST00000535607 MLLT3P42568 568 aaPredicted RBP10.85□□□□□ -0.67
USP28-202ENST00000535607 GPIHBP1Q8IV16 184 aa10.85□□□□□ -0.67
USP28-202ENST00000535607 OXER1Q8TDS5 423 aa10.85□□□□□ -0.67
USP28-202ENST00000535607 RIMBP2O15034 1052 aa10.83□□□□□ -0.68
USP28-202ENST00000535607 EVI5O60447 810 aa10.82□□□□□ -0.68
USP28-202ENST00000535607 ZC3H15Q8WU90 426 aaKnown RBP10.82□□□□□ -0.68
USP28-202ENST00000535607 SLC34A2O95436 690 aa10.81□□□□□ -0.68
USP28-202ENST00000535607 PTCD2Q8WV60 388 aaKnown RBP10.81□□□□□ -0.68
USP28-202ENST00000535607 DOK7Q18PE1 504 aa10.8□□□□□ -0.68
USP28-202ENST00000535607 RBM26Q5T8P6 1007 aaKnown RBP10.8□□□□□ -0.68
USP28-202ENST00000535607 SLAIN1Q8ND83 568 aa10.8□□□□□ -0.68
USP28-202ENST00000535607 BICRAQ9NZM4 1560 aa10.8□□□□□ -0.68
USP28-202ENST00000535607 DDX12PQ92771 950 aa10.78□□□□□ -0.68
USP28-202ENST00000535607 NUTM2FA1L443 756 aa10.77□□□□□ -0.69
USP28-202ENST00000535607 KRI1Q8N9T8 703 aaKnown RBP10.77□□□□□ -0.69
USP28-202ENST00000535607 ZNF710Q8N1W2 664 aa10.76□□□□□ -0.69
USP28-202ENST00000535607 PCDHGA4Q9Y5G9 962 aa10.75□□□□□ -0.69
USP28-202ENST00000535607 PTGER2P43116 358 aa10.74□□□□□ -0.69
USP28-202ENST00000535607 SNPHO15079 494 aa10.73□□□□□ -0.69
USP28-202ENST00000535607 ZMYND10O75800 440 aa10.71□□□□□ -0.69
USP28-202ENST00000535607 EPAS1Q99814 870 aa10.71□□□□□ -0.69
USP28-202ENST00000535607 SLC24A3Q9HC58 644 aa10.7□□□□□ -0.7
USP28-202ENST00000535607 PHF14O94880 888 aa10.69□□□□□ -0.7
USP28-202ENST00000535607 HRCP23327 699 aa10.69□□□□□ -0.7
USP28-202ENST00000535607 ZSWIM6Q9HCJ5 1215 aa10.69□□□□□ -0.7
USP28-202ENST00000535607 MAP3K7O43318 606 aa10.68□□□□□ -0.7
USP28-202ENST00000535607 FCHSD2O94868 740 aa10.68□□□□□ -0.7
USP28-202ENST00000535607 OSBPP22059 807 aa10.68□□□□□ -0.7
USP28-202ENST00000535607 POTEB2H3BUK9 544 aa10.67□□□□□ -0.7
USP28-202ENST00000535607 BARGINQ6ZT62 677 aa10.67□□□□□ -0.7
USP28-202ENST00000535607 ANO8Q9HCE9 1232 aaPredicted RBP10.67□□□□□ -0.7
USP28-202ENST00000535607 TYW1BQ6NUM6 668 aa10.66□□□□□ -0.7
USP28-202ENST00000535607 FBXW7Q969H0 707 aa10.66□□□□□ -0.7
USP28-202ENST00000535607 POTEJP0CG39 1038 aa10.65□□□□□ -0.7
USP28-202ENST00000535607 AK7Q96M32 723 aa10.65□□□□□ -0.7
USP28-202ENST00000535607 NUDT7P0C024 238 aa10.64□□□□□ -0.71
USP28-202ENST00000535607 ARSIQ5FYB1 569 aa10.64□□□□□ -0.71
USP28-202ENST00000535607 RBM33Q96EV2 1170 aaKnown RBP10.64□□□□□ -0.71
USP28-202ENST00000535607 JPH4Q96JJ6 628 aa10.64□□□□□ -0.71
USP28-202ENST00000535607 HIC1Q14526 733 aa10.63□□□□□ -0.71
USP28-202ENST00000535607 NEUROD2Q15784 382 aa10.63□□□□□ -0.71
USP28-202ENST00000535607 EN1Q05925 392 aaPredicted RBP10.62□□□□□ -0.71
USP28-202ENST00000535607 ZNF454Q8N9F8 522 aa10.62□□□□□ -0.71
USP28-202ENST00000535607 GNPATO15228 680 aa10.61□□□□□ -0.71
USP28-202ENST00000535607 PSDA5PKW4 1024 aaPredicted RBP10.6□□□□□ -0.71
USP28-202ENST00000535607 HOXB3P14651 431 aaPredicted RBP10.6□□□□□ -0.71
USP28-202ENST00000535607 BAZ1AQ9NRL2 1556 aaPredicted RBP10.6□□□□□ -0.71
USP28-202ENST00000535607 PCDHGA10Q9Y5H3 936 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms