RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 MYT1LQ9UL68 1186 aa11.01□□□□□ -0.65
USP48-215ENST00000534705 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.99□□□□□ -0.65
USP48-215ENST00000534705 ZFP91Q96JP5 570 aaPredicted RBP10.99□□□□□ -0.65
USP48-215ENST00000534705 MS4A4AQ96JQ5 239 aa10.98□□□□□ -0.65
USP48-215ENST00000534705 TAOK2Q9UL54 1235 aa10.97□□□□□ -0.65
USP48-215ENST00000534705 PHF8Q9UPP1 1060 aa10.97□□□□□ -0.65
USP48-215ENST00000534705 NLRP6P59044 892 aa10.94□□□□□ -0.66
USP48-215ENST00000534705 ARSIQ5FYB1 569 aa10.93□□□□□ -0.66
USP48-215ENST00000534705 RNF25Q96BH1 459 aaPredicted RBP10.93□□□□□ -0.66
USP48-215ENST00000534705 ZNF316A6NFI3 1004 aaPredicted RBP10.9□□□□□ -0.66
USP48-215ENST00000534705 ANKRD13DQ6ZTN6 518 aa10.88□□□□□ -0.67
USP48-215ENST00000534705 FBXO22Q8NEZ5 403 aa10.85□□□□□ -0.67
USP48-215ENST00000534705 BCL11BQ9C0K0 894 aaPredicted RBP10.84□□□□□ -0.67
USP48-215ENST00000534705 PBX2P40425 430 aa10.82□□□□□ -0.68
USP48-215ENST00000534705 LSM11P83369 360 aaKnown RBP eCLIP10.82□□□□□ -0.68
USP48-215ENST00000534705 KHSRPQ92945 711 aaKnown RBP eCLIP10.81□□□□□ -0.682e-11■■■■□ 23.4
USP48-215ENST00000534705 STK24Q9Y6E0 443 aa10.81□□□□□ -0.68
USP48-215ENST00000534705 KIF3CO14782 793 aa10.79□□□□□ -0.68
USP48-215ENST00000534705 C2orf72A6NCS6 295 aa10.77□□□□□ -0.69
USP48-215ENST00000534705 SLC34A2O95436 690 aa10.77□□□□□ -0.69
USP48-215ENST00000534705 MFRPQ9BY79 579 aa10.77□□□□□ -0.69
USP48-215ENST00000534705 STK25O00506 426 aa10.75□□□□□ -0.69
USP48-215ENST00000534705 NUDT7P0C024 238 aa10.75□□□□□ -0.69
USP48-215ENST00000534705 PCDHGA4Q9Y5G9 962 aa10.73□□□□□ -0.69
USP48-215ENST00000534705 TMC2Q8TDI7 906 aa10.72□□□□□ -0.69
USP48-215ENST00000534705 LHX6Q9UPM6 363 aa10.72□□□□□ -0.69
USP48-215ENST00000534705 PSDA5PKW4 1024 aaPredicted RBP10.7□□□□□ -0.7
USP48-215ENST00000534705 HCSTQ9UBK5 93 aa10.69□□□□□ -0.7
USP48-215ENST00000534705 ECM2O94769 699 aaPredicted RBP10.68□□□□□ -0.7
USP48-215ENST00000534705 ARHGAP33O14559 1287 aa10.66□□□□□ -0.7
USP48-215ENST00000534705 POTEEQ6S8J3 1075 aa10.66□□□□□ -0.7
USP48-215ENST00000534705 AXIN2Q9Y2T1 843 aa10.66□□□□□ -0.7
USP48-215ENST00000534705 PLA2G2EQ9NZK7 142 aa10.65□□□□□ -0.7
USP48-215ENST00000534705 ADGRD1Q6QNK2 874 aa10.63□□□□□ -0.71
USP48-215ENST00000534705 TK2O00142 265 aa10.6□□□□□ -0.71
USP48-215ENST00000534705 PTCD2Q8WV60 388 aaKnown RBP10.58□□□□□ -0.72
USP48-215ENST00000534705 TBC1D12O60347 775 aa10.56□□□□□ -0.72
USP48-215ENST00000534705 KDM4FA0A1W2PPD8 638 aa10.55□□□□□ -0.72
USP48-215ENST00000534705 STAC3Q96MF2 364 aa10.55□□□□□ -0.72
USP48-215ENST00000534705 RGL2O15211 777 aa10.54□□□□□ -0.72
USP48-215ENST00000534705 PPP1R37O75864 691 aa10.54□□□□□ -0.72
USP48-215ENST00000534705 HRO43593 1189 aa10.53□□□□□ -0.72
USP48-215ENST00000534705 FOXK1P85037 733 aa10.53□□□□□ -0.72
USP48-215ENST00000534705 PPP4R3BQ5MIZ7 849 aa10.53□□□□□ -0.72
USP48-215ENST00000534705 KCNH8Q96L42 1107 aa10.52□□□□□ -0.73
USP48-215ENST00000534705 PSEN2P49810 448 aa10.5□□□□□ -0.73
USP48-215ENST00000534705 PKD2Q13563 968 aa10.5□□□□□ -0.73
USP48-215ENST00000534705 PLPP6Q8IY26 295 aa10.5□□□□□ -0.73
USP48-215ENST00000534705 DMRTA1Q5VZB9 504 aa10.49□□□□□ -0.73
USP48-215ENST00000534705 GPHNQ9NQX3 736 aaPredicted RBP10.49□□□□□ -0.73
USP48-215ENST00000534705 KCTD12Q96CX2 325 aaKnown RBP10.46□□□□□ -0.73
USP48-215ENST00000534705 DSG2Q14126 1118 aa10.42□□□□□ -0.74
USP48-215ENST00000534705 KCNK17Q96T54 332 aa10.41□□□□□ -0.74
USP48-215ENST00000534705 RGS20O76081 388 aa10.39□□□□□ -0.75
USP48-215ENST00000534705 HS6ST3Q8IZP7 471 aa10.38□□□□□ -0.75
USP48-215ENST00000534705 SLC4A5Q9BY07 1137 aa10.38□□□□□ -0.75
USP48-215ENST00000534705 VPS9D1Q9Y2B5 631 aa10.38□□□□□ -0.75
USP48-215ENST00000534705 IFFO2Q5TF58 517 aa10.36□□□□□ -0.75
USP48-215ENST00000534705 OXER1Q8TDS5 423 aa10.36□□□□□ -0.75
USP48-215ENST00000534705 PTPN5P54829 565 aa10.35□□□□□ -0.75
USP48-215ENST00000534705 BCL2L12Q9HB09 334 aa10.35□□□□□ -0.75
USP48-215ENST00000534705 ZNF454Q8N9F8 522 aa10.34□□□□□ -0.75
USP48-215ENST00000534705 RYDENQ9NUL5 291 aaKnown RBP10.34□□□□□ -0.75
USP48-215ENST00000534705 GOLGA8CPA6NN73 597 aa10.32□□□□□ -0.76
USP48-215ENST00000534705 PTPREP23469 700 aa10.32□□□□□ -0.76
USP48-215ENST00000534705 UPF1Q92900 1129 aaKnown RBP eCLIP10.3□□□□□ -0.76
USP48-215ENST00000534705 BHMG1C9JSJ3 638 aaPredicted RBP10.29□□□□□ -0.76
USP48-215ENST00000534705 THSD4Q6ZMP0 1018 aa10.29□□□□□ -0.76
USP48-215ENST00000534705 FOSBP53539 338 aa10.28□□□□□ -0.76
USP48-215ENST00000534705 MRPL50Q8N5N7 158 aaKnown RBP10.28□□□□□ -0.76
USP48-215ENST00000534705 PPP1R15BQ5SWA1 713 aa10.27□□□□□ -0.77
USP48-215ENST00000534705 CRISPLD2Q9H0B8 497 aa10.27□□□□□ -0.77
USP48-215ENST00000534705 DNAJC5Q9H3Z4 198 aa10.27□□□□□ -0.77
USP48-215ENST00000534705 CHGAP10645 457 aaKnown RBP10.26□□□□□ -0.77
USP48-215ENST00000534705 WNT2BQ93097 391 aa10.26□□□□□ -0.77
USP48-215ENST00000534705 ZBED2Q9BTP6 218 aa10.26□□□□□ -0.77
USP48-215ENST00000534705 ANO8Q9HCE9 1232 aaPredicted RBP10.26□□□□□ -0.77
USP48-215ENST00000534705 PDE4AP27815 886 aa10.25□□□□□ -0.77
USP48-215ENST00000534705 IRX2Q9BZI1 471 aaPredicted RBP10.25□□□□□ -0.77
USP48-215ENST00000534705 NBPF3Q9H094 633 aa10.25□□□□□ -0.77
USP48-215ENST00000534705 JPH4Q96JJ6 628 aa10.24□□□□□ -0.77
USP48-215ENST00000534705 A0A0G2JS52 829 aa10.23□□□□□ -0.77
USP48-215ENST00000534705 ZDHHC16Q969W1 377 aa10.23□□□□□ -0.77
USP48-215ENST00000534705 EVI5O60447 810 aa10.21□□□□□ -0.77
USP48-215ENST00000534705 NKX1-1Q15270 411 aaPredicted RBP10.17□□□□□ -0.78
USP48-215ENST00000534705 ADAM33Q9BZ11 813 aa10.17□□□□□ -0.78
USP48-215ENST00000534705 MAP3K9P80192 1104 aa10.16□□□□□ -0.78
USP48-215ENST00000534705 NCKAP5LQ9HCH0 1330 aa10.15□□□□□ -0.78
USP48-215ENST00000534705 RABGEF1Q9UJ41 708 aa10.14□□□□□ -0.79
USP48-215ENST00000534705 PPP1R3GB7ZBB8 358 aa10.13□□□□□ -0.79
USP48-215ENST00000534705 ANKK1Q8NFD2 765 aa10.13□□□□□ -0.79
USP48-215ENST00000534705 DDX27Q96GQ7 796 aaKnown RBP10.13□□□□□ -0.79
USP48-215ENST00000534705 NYAP1Q6ZVC0 841 aa10.11□□□□□ -0.79
USP48-215ENST00000534705 LARP6Q9BRS8 491 aaKnown RBP10.11□□□□□ -0.79
USP48-215ENST00000534705 ITGBL1O95965 494 aaPredicted RBP10.1□□□□□ -0.79
USP48-215ENST00000534705 LAPTM4BQ86VI4 370 aa10.1□□□□□ -0.79
USP48-215ENST00000534705 FBXW7Q969H0 707 aa10.09□□□□□ -0.79
USP48-215ENST00000534705 ONECUT3O60422 494 aaPredicted RBP10.07□□□□□ -0.8
USP48-215ENST00000534705 MFSD10Q14728 455 aa10.07□□□□□ -0.8
USP48-215ENST00000534705 PCDHGA10Q9Y5H3 936 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms