RNA–Protein interactions for RNA: ENST00000534389.2

CSDE1-216, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 601 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-216ENST00000534389 L3MBTL3Q96JM7 780 aaPredicted RBP5.93□□□□□ -1.46
CSDE1-216ENST00000534389 PDE4AP27815 886 aa5.92□□□□□ -1.46
CSDE1-216ENST00000534389 POTEJP0CG39 1038 aa5.91□□□□□ -1.46
CSDE1-216ENST00000534389 LARP6Q9BRS8 491 aaKnown RBP5.91□□□□□ -1.46
CSDE1-216ENST00000534389 CADPS2Q86UW7 1296 aa5.9□□□□□ -1.46
CSDE1-216ENST00000534389 TMC2Q8TDI7 906 aa5.9□□□□□ -1.46
CSDE1-216ENST00000534389 TMEM121BQ9BXQ6 578 aaPredicted RBP5.9□□□□□ -1.46
CSDE1-216ENST00000534389 TULP1O00294 542 aaPredicted RBP5.89□□□□□ -1.47
CSDE1-216ENST00000534389 C3orf67Q6ZVT6 689 aa5.89□□□□□ -1.47
CSDE1-216ENST00000534389 DDX27Q96GQ7 796 aaKnown RBP5.88□□□□□ -1.47
CSDE1-216ENST00000534389 POTEMA6NI47 508 aa5.87□□□□□ -1.47
CSDE1-216ENST00000534389 E2F4Q16254 413 aa5.87□□□□□ -1.47
CSDE1-216ENST00000534389 MAMSTRQ6ZN01 415 aa5.86□□□□□ -1.47
CSDE1-216ENST00000534389 SCUBE2Q9NQ36 999 aa5.86□□□□□ -1.47
CSDE1-216ENST00000534389 EIF2AK3Q9NZJ5 1116 aaKnown RBP5.86□□□□□ -1.47
CSDE1-216ENST00000534389 TMEM92Q6UXU6 159 aa5.85□□□□□ -1.47
CSDE1-216ENST00000534389 NCKAP5LQ9HCH0 1330 aa5.84□□□□□ -1.47
CSDE1-216ENST00000534389 KCNV2Q8TDN2 545 aa5.83□□□□□ -1.48
CSDE1-216ENST00000534389 OTUD5Q96G74 571 aa5.83□□□□□ -1.48
CSDE1-216ENST00000534389 CRISPLD2Q9H0B8 497 aa5.83□□□□□ -1.48
CSDE1-216ENST00000534389 C2orf72A6NCS6 295 aa5.82□□□□□ -1.48
CSDE1-216ENST00000534389 PPP1R15BQ5SWA1 713 aa5.82□□□□□ -1.48
CSDE1-216ENST00000534389 SLAIN1Q8ND83 568 aa5.82□□□□□ -1.48
CSDE1-216ENST00000534389 KIF3CO14782 793 aa5.81□□□□□ -1.48
CSDE1-216ENST00000534389 ARHGEF1Q92888 912 aaKnown RBP5.81□□□□□ -1.48
CSDE1-216ENST00000534389 GPHNQ9NQX3 736 aaPredicted RBP5.81□□□□□ -1.48
CSDE1-216ENST00000534389 TPRNQ4KMQ1 711 aa5.8□□□□□ -1.48
CSDE1-216ENST00000534389 DSG2Q14126 1118 aa5.79□□□□□ -1.48
CSDE1-216ENST00000534389 SMYD5Q6GMV2 418 aa5.79□□□□□ -1.48
CSDE1-216ENST00000534389 ZNF316A6NFI3 1004 aaPredicted RBP5.78□□□□□ -1.48
CSDE1-216ENST00000534389 MFSD10Q14728 455 aa5.78□□□□□ -1.48
CSDE1-216ENST00000534389 POTEGQ6S5H5 508 aa5.78□□□□□ -1.48
CSDE1-216ENST00000534389 MAP3K9P80192 1104 aa5.77□□□□□ -1.49
CSDE1-216ENST00000534389 FOXK1P85037 733 aa5.77□□□□□ -1.49
CSDE1-216ENST00000534389 PLPP6Q8IY26 295 aa5.77□□□□□ -1.49
CSDE1-216ENST00000534389 UPF1Q92900 1129 aaKnown RBP eCLIP5.76□□□□□ -1.49
CSDE1-216ENST00000534389 DPYSL4O14531 572 aa5.74□□□□□ -1.49
CSDE1-216ENST00000534389 TBC1D12O60347 775 aa5.74□□□□□ -1.49
CSDE1-216ENST00000534389 SEMA3EO15041 775 aa5.73□□□□□ -1.49
CSDE1-216ENST00000534389 PRKCSHP14314 528 aaPredicted RBP5.73□□□□□ -1.49
CSDE1-216ENST00000534389 PCDH10Q9P2E7 1040 aa5.73□□□□□ -1.49
CSDE1-216ENST00000534389 HOXB3P14651 431 aaPredicted RBP5.72□□□□□ -1.49
CSDE1-216ENST00000534389 CAMK2BQ13554 666 aa5.72□□□□□ -1.49
CSDE1-216ENST00000534389 SPDYE16A6NNV3 312 aaPredicted RBP5.71□□□□□ -1.5
CSDE1-216ENST00000534389 SNPHO15079 494 aa5.71□□□□□ -1.5
CSDE1-216ENST00000534389 DOK7Q18PE1 504 aa5.71□□□□□ -1.5
CSDE1-216ENST00000534389 LMOD2Q6P5Q4 547 aa5.71□□□□□ -1.5
CSDE1-216ENST00000534389 EMILIN3Q9NT22 766 aa5.71□□□□□ -1.5
CSDE1-216ENST00000534389 ZNF710Q8N1W2 664 aa5.7□□□□□ -1.5
CSDE1-216ENST00000534389 GRXCR2A6NFK2 248 aa5.69□□□□□ -1.5
CSDE1-216ENST00000534389 RIMBP2O15034 1052 aa5.69□□□□□ -1.5
CSDE1-216ENST00000534389 SLC34A2O95436 690 aa5.69□□□□□ -1.5
CSDE1-216ENST00000534389 OXER1Q8TDS5 423 aa5.68□□□□□ -1.5
CSDE1-216ENST00000534389 PCDHGA4Q9Y5G9 962 aa5.68□□□□□ -1.5
CSDE1-216ENST00000534389 TESPA1A2RU30 521 aaPredicted RBP5.67□□□□□ -1.5
CSDE1-216ENST00000534389 ARSIQ5FYB1 569 aa5.67□□□□□ -1.5
CSDE1-216ENST00000534389 PTCD2Q8WV60 388 aaKnown RBP5.67□□□□□ -1.5
CSDE1-216ENST00000534389 KHSRPQ92945 711 aaKnown RBP eCLIP5.67□□□□□ -1.54e-7■■■■□ 20
CSDE1-216ENST00000534389 EVI5O60447 810 aa5.66□□□□□ -1.5
CSDE1-216ENST00000534389 DHX30Q7L2E3 1194 aaKnown RBP eCLIP5.66□□□□□ -1.5
CSDE1-216ENST00000534389 FAM163AQ96GL9 167 aaPredicted RBP5.66□□□□□ -1.5
CSDE1-216ENST00000534389 ZSWIM6Q9HCJ5 1215 aa5.66□□□□□ -1.5
CSDE1-216ENST00000534389 ARIH1Q9Y4X5 557 aaPredicted RBP5.66□□□□□ -1.5
CSDE1-216ENST00000534389 ST18O60284 1047 aa5.65□□□□□ -1.5
CSDE1-216ENST00000534389 MLLT3P42568 568 aaPredicted RBP5.65□□□□□ -1.5
CSDE1-216ENST00000534389 PDIA6Q15084 440 aa5.65□□□□□ -1.5
CSDE1-216ENST00000534389 GPR153Q6NV75 609 aa5.65□□□□□ -1.5
CSDE1-216ENST00000534389 GPIHBP1Q8IV16 184 aa5.65□□□□□ -1.5
CSDE1-216ENST00000534389 DDX12PQ92771 950 aa5.65□□□□□ -1.5
CSDE1-216ENST00000534389 NUTM2FA1L443 756 aa5.64□□□□□ -1.51
CSDE1-216ENST00000534389 NUDT7P0C024 238 aa5.64□□□□□ -1.51
CSDE1-216ENST00000534389 KRI1Q8N9T8 703 aaKnown RBP5.64□□□□□ -1.51
CSDE1-216ENST00000534389 HOXB1P14653 301 aaPredicted RBP5.63□□□□□ -1.51
CSDE1-216ENST00000534389 LCE2DQ5TA82 110 aaPredicted RBP5.63□□□□□ -1.51
CSDE1-216ENST00000534389 RBM26Q5T8P6 1007 aaKnown RBP5.62□□□□□ -1.51
CSDE1-216ENST00000534389 EMP3P54852 163 aa5.61□□□□□ -1.51
CSDE1-216ENST00000534389 MARVELD3Q96A59 401 aa5.61□□□□□ -1.51
CSDE1-216ENST00000534389 KDM4FA0A1W2PPD8 638 aa5.6□□□□□ -1.51
CSDE1-216ENST00000534389 ZC3H15Q8WU90 426 aaKnown RBP5.6□□□□□ -1.51
CSDE1-216ENST00000534389 RBM33Q96EV2 1170 aaKnown RBP5.6□□□□□ -1.51
CSDE1-216ENST00000534389 MAP3K7O43318 606 aa5.59□□□□□ -1.51
CSDE1-216ENST00000534389 LHX6Q9UPM6 363 aa5.59□□□□□ -1.51
CSDE1-216ENST00000534389 ANO8Q9HCE9 1232 aaPredicted RBP5.58□□□□□ -1.52
CSDE1-216ENST00000534389 ERBB3P21860 1342 aa5.57□□□□□ -1.52
CSDE1-216ENST00000534389 ZNF454Q8N9F8 522 aa5.57□□□□□ -1.52
CSDE1-216ENST00000534389 KCNH8Q96L42 1107 aa5.57□□□□□ -1.52
CSDE1-216ENST00000534389 EPAS1Q99814 870 aa5.57□□□□□ -1.52
CSDE1-216ENST00000534389 FAM205CA6NFA0 338 aa5.56□□□□□ -1.52
CSDE1-216ENST00000534389 PHF14O94880 888 aa5.56□□□□□ -1.52
CSDE1-216ENST00000534389 PTGER2P43116 358 aa5.56□□□□□ -1.52
CSDE1-216ENST00000534389 VARS2Q5ST30 1063 aaKnown RBP5.56□□□□□ -1.52
CSDE1-216ENST00000534389 JPH4Q96JJ6 628 aa5.56□□□□□ -1.52
CSDE1-216ENST00000534389 FCHSD2O94868 740 aa5.55□□□□□ -1.52
CSDE1-216ENST00000534389 FOSBP53539 338 aa5.55□□□□□ -1.52
CSDE1-216ENST00000534389 TYW1BQ6NUM6 668 aa5.55□□□□□ -1.52
CSDE1-216ENST00000534389 FBXW7Q969H0 707 aa5.55□□□□□ -1.52
CSDE1-216ENST00000534389 SLC24A3Q9HC58 644 aa5.55□□□□□ -1.52
CSDE1-216ENST00000534389 PCDHGA10Q9Y5H3 936 aa5.55□□□□□ -1.52
CSDE1-216ENST00000534389 POTEB3A0JP26 581 aa5.54□□□□□ -1.52
CSDE1-216ENST00000534389 PSDA5PKW4 1024 aaPredicted RBP5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms