RNA–Protein interactions for RNA: ENST00000533789.5

HIF3A-216, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 4

Gene HIF3A, Length 562 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-216ENST00000533789 ZFYVE16Q7Z3T8 1539 aa30.12■■■□□ 2.41
HIF3A-216ENST00000533789 MADDQ8WXG6 1647 aa30.11■■■□□ 2.41
HIF3A-216ENST00000533789 SIGLEC1Q9BZZ2 1709 aa30.1■■■□□ 2.41
HIF3A-216ENST00000533789 FYCO1Q9BQS8 1478 aa30.1■■■□□ 2.41
HIF3A-216ENST00000533789 PREX2Q70Z35 1606 aa30.08■■■□□ 2.41
HIF3A-216ENST00000533789 POGZQ7Z3K3 1410 aa30.08■■■□□ 2.41
HIF3A-216ENST00000533789 MAGI2Q86UL8 1455 aa30.06■■■□□ 2.4
HIF3A-216ENST00000533789 ARHGAP5Q13017 1502 aa30.05■■■□□ 2.4
HIF3A-216ENST00000533789 CDC42BPAQ5VT25 1732 aa30.05■■■□□ 2.4
HIF3A-216ENST00000533789 SCAPERQ9BY12 1400 aa30.05■■■□□ 2.4
HIF3A-216ENST00000533789 RIMS1Q86UR5 1692 aaKnown RBP30.04■■■□□ 2.4
HIF3A-216ENST00000533789 PTPRMP28827 1452 aa30.02■■■□□ 2.4
HIF3A-216ENST00000533789 YEATS2Q9ULM3 1422 aa30■■■□□ 2.39
HIF3A-216ENST00000533789 FER1L4A9Z1Z3 1794 aa29.98■■■□□ 2.39
HIF3A-216ENST00000533789 EFCAB2Q5VUJ9 269 aa29.98■■■□□ 2.39
HIF3A-216ENST00000533789 KDM5CP41229 1560 aa29.98■■■□□ 2.39
HIF3A-216ENST00000533789 ITSN2Q9NZM3 1697 aa29.98■■■□□ 2.39
HIF3A-216ENST00000533789 ARID4BQ4LE39 1312 aaPredicted RBP29.97■■■□□ 2.39
HIF3A-216ENST00000533789 ZNF518AQ6AHZ1 1483 aa29.95■■■□□ 2.39
HIF3A-216ENST00000533789 ABCC1P33527 1531 aa29.91■■■□□ 2.38
HIF3A-216ENST00000533789 C9orf84Q5VXU9 1444 aa29.87■■■□□ 2.37
HIF3A-216ENST00000533789 ATP10AO60312 1499 aa29.87■■■□□ 2.37
HIF3A-216ENST00000533789 DIP2CQ9Y2E4 1556 aa29.85■■■□□ 2.37
HIF3A-216ENST00000533789 ABCA6Q8N139 1617 aa29.84■■■□□ 2.37
HIF3A-216ENST00000533789 REREQ9P2R6 1566 aa29.81■■■□□ 2.36
HIF3A-216ENST00000533789 SAMD9LQ8IVG5 1584 aa29.8■■■□□ 2.36
HIF3A-216ENST00000533789 ARHGEF12Q9NZN5 1544 aa29.8■■■□□ 2.36
HIF3A-216ENST00000533789 KIDINS220Q9ULH0 1771 aa29.79■■■□□ 2.36
HIF3A-216ENST00000533789 CEP162Q5TB80 1403 aa29.79■■■□□ 2.36
HIF3A-216ENST00000533789 MLH3Q9UHC1 1453 aa29.77■■■□□ 2.36
HIF3A-216ENST00000533789 AFAP1Q8N556 730 aa29.75■■■□□ 2.35
HIF3A-216ENST00000533789 TRAPPC8Q9Y2L5 1435 aa29.74■■■□□ 2.35
HIF3A-216ENST00000533789 GPATCH8Q9UKJ3 1502 aaKnown RBP29.74■■■□□ 2.35
HIF3A-216ENST00000533789 LMTK3Q96Q04 1460 aa29.74■■■□□ 2.35
HIF3A-216ENST00000533789 EHBP1L1Q8N3D4 1523 aa29.73■■■□□ 2.35
HIF3A-216ENST00000533789 SYCP2Q9BX26 1530 aa29.72■■■□□ 2.35
HIF3A-216ENST00000533789 MTUS2Q5JR59 1369 aa29.68■■■□□ 2.34
HIF3A-216ENST00000533789 MLECQ14165 292 aa29.68■■■□□ 2.34
HIF3A-216ENST00000533789 TIAM1Q13009 1591 aa29.68■■■□□ 2.34
HIF3A-216ENST00000533789 PREX1Q8TCU6 1659 aa29.67■■■□□ 2.34
HIF3A-216ENST00000533789 AGLP35573 1532 aa29.66■■■□□ 2.34
HIF3A-216ENST00000533789 MYT1LQ9UL68 1186 aa29.64■■■□□ 2.34
HIF3A-216ENST00000533789 PLEKHH2Q8IVE3 1493 aa29.63■■■□□ 2.33
HIF3A-216ENST00000533789 INO80Q9ULG1 1556 aaPredicted RBP29.63■■■□□ 2.33
HIF3A-216ENST00000533789 CCNB3Q8WWL7 1395 aa29.63■■■□□ 2.33
HIF3A-216ENST00000533789 SUPT6HQ7KZ85 1726 aaKnown RBP29.62■■■□□ 2.33
HIF3A-216ENST00000533789 SETD1BQ9UPS6 1966 aaKnown RBP29.61■■■□□ 2.33
HIF3A-216ENST00000533789 C3P01024 1663 aa29.6■■■□□ 2.33
HIF3A-216ENST00000533789 ZNF777Q9ULD5 760 aaPredicted RBP29.59■■■□□ 2.33
HIF3A-216ENST00000533789 ATP7AQ04656 1500 aa29.59■■■□□ 2.33
HIF3A-216ENST00000533789 KIAA1107Q9UPP5 1409 aa29.58■■■□□ 2.33
HIF3A-216ENST00000533789 PLPPR3Q6T4P5 718 aa29.56■■■□□ 2.32
HIF3A-216ENST00000533789 ADGBQ8N7X0 1667 aa29.55■■■□□ 2.32
HIF3A-216ENST00000533789 CFDP1Q9UEE9 299 aaPredicted RBP29.54■■■□□ 2.32
HIF3A-216ENST00000533789 MROH2AA6NES4 1674 aa29.52■■■□□ 2.32
HIF3A-216ENST00000533789 PLXNC1O60486 1568 aa29.52■■■□□ 2.32
HIF3A-216ENST00000533789 SPAG9O60271 1321 aaKnown RBP29.48■■■□□ 2.31
HIF3A-216ENST00000533789 VPS8Q8N3P4 1428 aa29.48■■■□□ 2.31
HIF3A-216ENST00000533789 HNRNPMP52272 730 aaKnown RBP eCLIP29.48■■■□□ 2.31
HIF3A-216ENST00000533789 ILDR1Q86SU0 546 aaPredicted RBP29.47■■■□□ 2.31
HIF3A-216ENST00000533789 NCOA2Q15596 1464 aa29.46■■■□□ 2.31
HIF3A-216ENST00000533789 HSPA2P54652 639 aa29.43■■■□□ 2.3
HIF3A-216ENST00000533789 LOC105371045A0A1W2PR82 267 aa29.42■■■□□ 2.3
HIF3A-216ENST00000533789 CEBPAP49715 358 aaPredicted RBP29.42■■■□□ 2.3
HIF3A-216ENST00000533789 MBD5Q9P267 1494 aa29.42■■■□□ 2.3
HIF3A-216ENST00000533789 CLTCQ00610 1675 aaKnown RBP29.41■■■□□ 2.3
HIF3A-216ENST00000533789 CNTLNQ9NXG0 1405 aa29.41■■■□□ 2.3
HIF3A-216ENST00000533789 A2MP01023 1474 aa29.4■■■□□ 2.3
HIF3A-216ENST00000533789 CAMSAP2Q08AD1 1489 aa29.39■■■□□ 2.3
HIF3A-216ENST00000533789 STRCQ7RTU9 1775 aa29.39■■■□□ 2.29
HIF3A-216ENST00000533789 UHRF1BP1Q6BDS2 1440 aa29.37■■■□□ 2.29
HIF3A-216ENST00000533789 ZNF644Q9H582 1327 aaPredicted RBP29.37■■■□□ 2.29
HIF3A-216ENST00000533789 LRRC9Q6ZRR7 1453 aa29.36■■■□□ 2.29
HIF3A-216ENST00000533789 ESF1Q9H501 851 aaKnown RBP29.36■■■□□ 2.29
HIF3A-216ENST00000533789 MAP3K1Q13233 1512 aa29.35■■■□□ 2.29
HIF3A-216ENST00000533789 CCDC141Q6ZP82 1450 aa29.34■■■□□ 2.29
HIF3A-216ENST00000533789 RTEL1-TNFRSF6BF6WH68 1400 aa29.33■■■□□ 2.29
HIF3A-216ENST00000533789 ARHGEF5Q12774 1597 aa29.33■■■□□ 2.29
HIF3A-216ENST00000533789 ZNF142P52746 1687 aaPredicted RBP29.27■■■□□ 2.28
HIF3A-216ENST00000533789 NPATQ14207 1427 aa29.26■■■□□ 2.27
HIF3A-216ENST00000533789 MYO3AQ8NEV4 1616 aa29.24■■■□□ 2.27
HIF3A-216ENST00000533789 ZMYM3Q14202 1370 aa29.21■■■□□ 2.27
HIF3A-216ENST00000533789 MAST1Q9Y2H9 1570 aa29.2■■■□□ 2.26
HIF3A-216ENST00000533789 DHX29Q7Z478 1369 aaKnown RBP29.18■■■□□ 2.26
HIF3A-216ENST00000533789 RSPH4AQ5TD94 716 aa29.18■■■□□ 2.26
HIF3A-216ENST00000533789 FBXO41Q8TF61 875 aa29.18■■■□□ 2.26
HIF3A-216ENST00000533789 FAM135AQ9P2D6 1515 aa29.18■■■□□ 2.26
HIF3A-216ENST00000533789 MYOM3Q5VTT5 1437 aa29.16■■■□□ 2.26
HIF3A-216ENST00000533789 CROCC2H7BZ55 1655 aa29.15■■■□□ 2.26
HIF3A-216ENST00000533789 GGT6Q6P531 493 aa29.15■■■□□ 2.26
HIF3A-216ENST00000533789 KANK4Q5T7N3 995 aaPredicted RBP29.14■■■□□ 2.26
HIF3A-216ENST00000533789 MIA2Q96PC5 1412 aa29.13■■■□□ 2.25
HIF3A-216ENST00000533789 PPP6R1Q9UPN7 881 aa29.13■■■□□ 2.25
HIF3A-216ENST00000533789 PTPRKQ15262 1439 aa29.12■■■□□ 2.25
HIF3A-216ENST00000533789 KDM5DQ9BY66 1539 aa29.12■■■□□ 2.25
HIF3A-216ENST00000533789 CEP170BQ9Y4F5 1589 aaPredicted RBP29.12■■■□□ 2.25
HIF3A-216ENST00000533789 CAMSAP1Q5T5Y3 1602 aa29.12■■■□□ 2.25
HIF3A-216ENST00000533789 RNF17Q9BXT8 1623 aaKnown RBP29.11■■■□□ 2.25
HIF3A-216ENST00000533789 EIF2AK4Q9P2K8 1649 aaKnown RBP29.11■■■□□ 2.25
HIF3A-216ENST00000533789 NCOA1Q15788 1441 aa29.1■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms