RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 MAGI2Q86UL8 1455 aa24.85■■□□□ 1.57
CPSF1-211ENST00000533492 ZMYM4Q5VZL5 1548 aa24.85■■□□□ 1.57
CPSF1-211ENST00000533492 POGZQ7Z3K3 1410 aa24.85■■□□□ 1.57
CPSF1-211ENST00000533492 ZFYVE16Q7Z3T8 1539 aa24.83■■□□□ 1.57
CPSF1-211ENST00000533492 ADAMTSL3P82987 1691 aa24.82■■□□□ 1.56
CPSF1-211ENST00000533492 YEATS2Q9ULM3 1422 aa24.82■■□□□ 1.56
CPSF1-211ENST00000533492 BCORL1Q5H9F3 1711 aa24.81■■□□□ 1.56
CPSF1-211ENST00000533492 MYT1LQ9UL68 1186 aa24.8■■□□□ 1.56
CPSF1-211ENST00000533492 PTPRMP28827 1452 aa24.78■■□□□ 1.56
CPSF1-211ENST00000533492 AFAP1Q8N556 730 aa24.78■■□□□ 1.56
CPSF1-211ENST00000533492 CDC42BPBQ9Y5S2 1711 aa24.77■■□□□ 1.56
CPSF1-211ENST00000533492 HECW2Q9P2P5 1572 aa24.76■■□□□ 1.55
CPSF1-211ENST00000533492 ZNF518AQ6AHZ1 1483 aa24.76■■□□□ 1.55
CPSF1-211ENST00000533492 CEP162Q5TB80 1403 aa24.75■■□□□ 1.55
CPSF1-211ENST00000533492 MLECQ14165 292 aa24.74■■□□□ 1.55
CPSF1-211ENST00000533492 PREX2Q70Z35 1606 aa24.73■■□□□ 1.55
CPSF1-211ENST00000533492 MADDQ8WXG6 1647 aa24.73■■□□□ 1.55
CPSF1-211ENST00000533492 ATP10AO60312 1499 aa24.72■■□□□ 1.55
CPSF1-211ENST00000533492 ZNF777Q9ULD5 760 aaPredicted RBP24.71■■□□□ 1.55
CPSF1-211ENST00000533492 MTUS2Q5JR59 1369 aa24.7■■□□□ 1.55
CPSF1-211ENST00000533492 LOC105371045A0A1W2PR82 267 aa24.69■■□□□ 1.54
CPSF1-211ENST00000533492 C9orf84Q5VXU9 1444 aa24.69■■□□□ 1.54
CPSF1-211ENST00000533492 CDC42BPAQ5VT25 1732 aa24.68■■□□□ 1.54
CPSF1-211ENST00000533492 PLPPR3Q6T4P5 718 aa24.67■■□□□ 1.54
CPSF1-211ENST00000533492 KDM5CP41229 1560 aa24.67■■□□□ 1.54
CPSF1-211ENST00000533492 RIMS1Q86UR5 1692 aaKnown RBP24.66■■□□□ 1.54
CPSF1-211ENST00000533492 SIGLEC1Q9BZZ2 1709 aa24.66■■□□□ 1.54
CPSF1-211ENST00000533492 TRAPPC8Q9Y2L5 1435 aa24.65■■□□□ 1.54
CPSF1-211ENST00000533492 ABCC1P33527 1531 aa24.65■■□□□ 1.54
CPSF1-211ENST00000533492 GPATCH8Q9UKJ3 1502 aaKnown RBP24.65■■□□□ 1.54
CPSF1-211ENST00000533492 CCNB3Q8WWL7 1395 aa24.65■■□□□ 1.54
CPSF1-211ENST00000533492 CFDP1Q9UEE9 299 aaPredicted RBP24.64■■□□□ 1.54
CPSF1-211ENST00000533492 ARHGEF12Q9NZN5 1544 aa24.64■■□□□ 1.53
CPSF1-211ENST00000533492 MLH3Q9UHC1 1453 aa24.62■■□□□ 1.53
CPSF1-211ENST00000533492 ITSN2Q9NZM3 1697 aa24.61■■□□□ 1.53
CPSF1-211ENST00000533492 HNRNPMP52272 730 aaKnown RBP eCLIP24.59■■□□□ 1.53
CPSF1-211ENST00000533492 DIP2CQ9Y2E4 1556 aa24.57■■□□□ 1.52
CPSF1-211ENST00000533492 FER1L4A9Z1Z3 1794 aa24.57■■□□□ 1.52
CPSF1-211ENST00000533492 SAMD9LQ8IVG5 1584 aa24.56■■□□□ 1.52
CPSF1-211ENST00000533492 EHBP1L1Q8N3D4 1523 aa24.56■■□□□ 1.52
CPSF1-211ENST00000533492 PLEKHH2Q8IVE3 1493 aa24.54■■□□□ 1.52
CPSF1-211ENST00000533492 SYCP2Q9BX26 1530 aa24.54■■□□□ 1.52
CPSF1-211ENST00000533492 SPAG9O60271 1321 aaKnown RBP24.54■■□□□ 1.52
CPSF1-211ENST00000533492 ABCA6Q8N139 1617 aa24.53■■□□□ 1.52
CPSF1-211ENST00000533492 KIAA1107Q9UPP5 1409 aa24.52■■□□□ 1.52
CPSF1-211ENST00000533492 REREQ9P2R6 1566 aa24.51■■□□□ 1.51
CPSF1-211ENST00000533492 ESF1Q9H501 851 aaKnown RBP24.51■■□□□ 1.51
CPSF1-211ENST00000533492 KIDINS220Q9ULH0 1771 aa24.5■■□□□ 1.51
CPSF1-211ENST00000533492 VPS8Q8N3P4 1428 aa24.48■■□□□ 1.51
CPSF1-211ENST00000533492 LMTK3Q96Q04 1460 aa24.48■■□□□ 1.51
CPSF1-211ENST00000533492 TIAM1Q13009 1591 aa24.47■■□□□ 1.51
CPSF1-211ENST00000533492 ZNF644Q9H582 1327 aaPredicted RBP24.47■■□□□ 1.51
CPSF1-211ENST00000533492 CEBPAP49715 358 aaPredicted RBP24.47■■□□□ 1.51
CPSF1-211ENST00000533492 AGLP35573 1532 aa24.46■■□□□ 1.51
CPSF1-211ENST00000533492 HSPA2P54652 639 aa24.44■■□□□ 1.5
CPSF1-211ENST00000533492 SUPT6HQ7KZ85 1726 aaKnown RBP24.43■■□□□ 1.5
CPSF1-211ENST00000533492 NCOA2Q15596 1464 aa24.42■■□□□ 1.5
CPSF1-211ENST00000533492 ATP7AQ04656 1500 aa24.41■■□□□ 1.5
CPSF1-211ENST00000533492 ILDR1Q86SU0 546 aaPredicted RBP24.38■■□□□ 1.49
CPSF1-211ENST00000533492 LRRC9Q6ZRR7 1453 aa24.36■■□□□ 1.49
CPSF1-211ENST00000533492 MBD5Q9P267 1494 aa24.36■■□□□ 1.49
CPSF1-211ENST00000533492 INO80Q9ULG1 1556 aaPredicted RBP24.36■■□□□ 1.49
CPSF1-211ENST00000533492 A2MP01023 1474 aa24.35■■□□□ 1.49
CPSF1-211ENST00000533492 RSPH4AQ5TD94 716 aa24.35■■□□□ 1.49
CPSF1-211ENST00000533492 SETD1BQ9UPS6 1966 aaKnown RBP24.34■■□□□ 1.49
CPSF1-211ENST00000533492 CNTLNQ9NXG0 1405 aa24.34■■□□□ 1.49
CPSF1-211ENST00000533492 APLP2Q06481 763 aa24.33■■□□□ 1.49
CPSF1-211ENST00000533492 KANK4Q5T7N3 995 aaPredicted RBP24.32■■□□□ 1.48
CPSF1-211ENST00000533492 GGT6Q6P531 493 aa24.32■■□□□ 1.48
CPSF1-211ENST00000533492 MAP3K1Q13233 1512 aa24.31■■□□□ 1.48
CPSF1-211ENST00000533492 PREX1Q8TCU6 1659 aa24.31■■□□□ 1.48
CPSF1-211ENST00000533492 RTEL1-TNFRSF6BF6WH68 1400 aa24.31■■□□□ 1.48
CPSF1-211ENST00000533492 CAMSAP2Q08AD1 1489 aa24.31■■□□□ 1.48
CPSF1-211ENST00000533492 UHRF1BP1Q6BDS2 1440 aa24.3■■□□□ 1.48
CPSF1-211ENST00000533492 C3P01024 1663 aa24.3■■□□□ 1.48
CPSF1-211ENST00000533492 CCDC141Q6ZP82 1450 aa24.28■■□□□ 1.48
CPSF1-211ENST00000533492 TSPY4P0CV99 314 aa24.28■■□□□ 1.48
CPSF1-211ENST00000533492 TSPY10P0CW01 314 aa24.28■■□□□ 1.48
CPSF1-211ENST00000533492 ADGBQ8N7X0 1667 aa24.27■■□□□ 1.48
CPSF1-211ENST00000533492 PLXNC1O60486 1568 aa24.27■■□□□ 1.48
CPSF1-211ENST00000533492 ZMYM3Q14202 1370 aa24.26■■□□□ 1.47
CPSF1-211ENST00000533492 PPP6R1Q9UPN7 881 aa24.24■■□□□ 1.47
CPSF1-211ENST00000533492 DHX29Q7Z478 1369 aaKnown RBP24.24■■□□□ 1.47
CPSF1-211ENST00000533492 MROH2AA6NES4 1674 aa24.21■■□□□ 1.47
CPSF1-211ENST00000533492 KIF3BO15066 747 aa24.2■■□□□ 1.46
CPSF1-211ENST00000533492 ARHGEF5Q12774 1597 aa24.2■■□□□ 1.46
CPSF1-211ENST00000533492 CLTCQ00610 1675 aaKnown RBP24.19■■□□□ 1.46
CPSF1-211ENST00000533492 DMRT2Q9Y5R5 561 aa24.19■■□□□ 1.46
CPSF1-211ENST00000533492 MYOM3Q5VTT5 1437 aa24.18■■□□□ 1.46
CPSF1-211ENST00000533492 MIA2Q96PC5 1412 aa24.18■■□□□ 1.46
CPSF1-211ENST00000533492 NPATQ14207 1427 aa24.18■■□□□ 1.46
CPSF1-211ENST00000533492 FBXO41Q8TF61 875 aa24.15■■□□□ 1.46
CPSF1-211ENST00000533492 STRCQ7RTU9 1775 aa24.1■■□□□ 1.45
CPSF1-211ENST00000533492 PTPRKQ15262 1439 aa24.1■■□□□ 1.45
CPSF1-211ENST00000533492 WASHC2CQ9Y4E1 1318 aa24.1■■□□□ 1.45
CPSF1-211ENST00000533492 CERKQ8TCT0 537 aa24.06■■□□□ 1.44
CPSF1-211ENST00000533492 MAST1Q9Y2H9 1570 aa24.06■■□□□ 1.44
CPSF1-211ENST00000533492 PTPRTO14522 1441 aa24.02■■□□□ 1.44
CPSF1-211ENST00000533492 KDM5DQ9BY66 1539 aa24.02■■□□□ 1.44
CPSF1-211ENST00000533492 PTPN23Q9H3S7 1636 aa24.02■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms