RNA–Protein interactions for RNA: ENST00000532737.1

USP48-214, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 680 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-214ENST00000532737 AKNAQ7Z591 1439 aa38.89■■■■□ 3.82
USP48-214ENST00000532737 GPATCH8Q9UKJ3 1502 aaKnown RBP38.88■■■■□ 3.81
USP48-214ENST00000532737 CCNB3Q8WWL7 1395 aa38.86■■■■□ 3.81
USP48-214ENST00000532737 NCOA2Q15596 1464 aa38.86■■■■□ 3.81
USP48-214ENST00000532737 ARHGAP5Q13017 1502 aa38.85■■■■□ 3.81
USP48-214ENST00000532737 PREX2Q70Z35 1606 aa38.82■■■■□ 3.81
USP48-214ENST00000532737 CFAP74Q9C0B2 1584 aa38.82■■■■□ 3.8
USP48-214ENST00000532737 CDC42BPAQ5VT25 1732 aa38.81■■■■□ 3.8
USP48-214ENST00000532737 SUPT6HQ7KZ85 1726 aaKnown RBP38.81■■■■□ 3.8
USP48-214ENST00000532737 CDC42BPBQ9Y5S2 1711 aa38.81■■■■□ 3.8
USP48-214ENST00000532737 RAPGEF3O95398 923 aa38.77■■■■□ 3.8
USP48-214ENST00000532737 CFDP1Q9UEE9 299 aaPredicted RBP38.76■■■■□ 3.8
USP48-214ENST00000532737 SCAPERQ9BY12 1400 aa38.73■■■■□ 3.79
USP48-214ENST00000532737 DENND4BO75064 1496 aaPredicted RBP38.73■■■■□ 3.79
USP48-214ENST00000532737 ZNF777Q9ULD5 760 aaPredicted RBP38.72■■■■□ 3.79
USP48-214ENST00000532737 HECW2Q9P2P5 1572 aa38.65■■■■□ 3.78
USP48-214ENST00000532737 FRMPD1Q5SYB0 1578 aa38.64■■■■□ 3.78
USP48-214ENST00000532737 ITSN2Q9NZM3 1697 aa38.62■■■■□ 3.77
USP48-214ENST00000532737 ARHGEF12Q9NZN5 1544 aa38.62■■■■□ 3.77
USP48-214ENST00000532737 ZNF644Q9H582 1327 aaPredicted RBP38.62■■■■□ 3.77
USP48-214ENST00000532737 SAMD9LQ8IVG5 1584 aa38.61■■■■□ 3.77
USP48-214ENST00000532737 ABCC1P33527 1531 aa38.6■■■■□ 3.77
USP48-214ENST00000532737 POGZQ7Z3K3 1410 aa38.6■■■■□ 3.77
USP48-214ENST00000532737 RICTORQ6R327 1708 aa38.58■■■■□ 3.77
USP48-214ENST00000532737 PPARGC1BQ86YN6 1023 aaKnown RBP38.57■■■■□ 3.76
USP48-214ENST00000532737 MYOM3Q5VTT5 1437 aa38.56■■■■□ 3.76
USP48-214ENST00000532737 AFAP1Q8N556 730 aa38.56■■■■□ 3.76
USP48-214ENST00000532737 HNRNPMP52272 730 aaKnown RBP eCLIP38.55■■■■□ 3.761e-7■■■■□ 25
USP48-214ENST00000532737 TRAPPC8Q9Y2L5 1435 aa38.54■■■■□ 3.76
USP48-214ENST00000532737 KIAA1107Q9UPP5 1409 aa38.53■■■■□ 3.76
USP48-214ENST00000532737 PLEKHH2Q8IVE3 1493 aa38.52■■■■□ 3.76
USP48-214ENST00000532737 SYCP2Q9BX26 1530 aa38.5■■■■□ 3.75
USP48-214ENST00000532737 ZNF518AQ6AHZ1 1483 aa38.49■■■■□ 3.75
USP48-214ENST00000532737 ADAMTSL3P82987 1691 aa38.49■■■■□ 3.75
USP48-214ENST00000532737 MIA2Q96PC5 1412 aa38.47■■■■□ 3.75
USP48-214ENST00000532737 ZMYM4Q5VZL5 1548 aa38.47■■■■□ 3.75
USP48-214ENST00000532737 CAMSAP2Q08AD1 1489 aa38.46■■■■□ 3.75
USP48-214ENST00000532737 MBD5Q9P267 1494 aa38.42■■■■□ 3.74
USP48-214ENST00000532737 KDM5CP41229 1560 aa38.42■■■■□ 3.74
USP48-214ENST00000532737 MAGI2Q86UL8 1455 aa38.4■■■■□ 3.74
USP48-214ENST00000532737 BCORL1Q5H9F3 1711 aa38.39■■■■□ 3.74
USP48-214ENST00000532737 YEATS2Q9ULM3 1422 aa38.38■■■■□ 3.74
USP48-214ENST00000532737 FGD6Q6ZV73 1430 aa38.38■■■■□ 3.73
USP48-214ENST00000532737 ARHGEF40Q8TER5 1519 aa38.36■■■■□ 3.73
USP48-214ENST00000532737 ZFYVE16Q7Z3T8 1539 aa38.35■■■■□ 3.73
USP48-214ENST00000532737 MLH3Q9UHC1 1453 aa38.34■■■■□ 3.73
USP48-214ENST00000532737 MYT1LQ9UL68 1186 aa38.33■■■■□ 3.73
USP48-214ENST00000532737 PTPRMP28827 1452 aa38.32■■■■□ 3.72
USP48-214ENST00000532737 SPAG9O60271 1321 aaKnown RBP38.32■■■■□ 3.72
USP48-214ENST00000532737 RSPH4AQ5TD94 716 aa38.29■■■■□ 3.72
USP48-214ENST00000532737 PTPN23Q9H3S7 1636 aa38.29■■■■□ 3.72
USP48-214ENST00000532737 MADDQ8WXG6 1647 aa38.28■■■■□ 3.72
USP48-214ENST00000532737 ILDR1Q86SU0 546 aaPredicted RBP38.27■■■■□ 3.72
USP48-214ENST00000532737 TCOF1Q13428 1488 aaKnown RBP38.27■■■■□ 3.72
USP48-214ENST00000532737 CCDC141Q6ZP82 1450 aa38.26■■■■□ 3.72
USP48-214ENST00000532737 ARHGEF5Q12774 1597 aa38.24■■■■□ 3.71
USP48-214ENST00000532737 ATP10AO60312 1499 aa38.22■■■■□ 3.71
USP48-214ENST00000532737 KIDINS220Q9ULH0 1771 aa38.21■■■■□ 3.71
USP48-214ENST00000532737 SIGLEC1Q9BZZ2 1709 aa38.19■■■■□ 3.7
USP48-214ENST00000532737 DIP2CQ9Y2E4 1556 aa38.18■■■■□ 3.7
USP48-214ENST00000532737 ATP7AQ04656 1500 aa38.17■■■■□ 3.7
USP48-214ENST00000532737 FAM50AQ14320 339 aaKnown RBP38.17■■■■□ 3.7
USP48-214ENST00000532737 ABCA6Q8N139 1617 aa38.16■■■■□ 3.7
USP48-214ENST00000532737 ARID4BQ4LE39 1312 aaPredicted RBP38.16■■■■□ 3.7
USP48-214ENST00000532737 INO80Q9ULG1 1556 aaPredicted RBP38.16■■■■□ 3.7
USP48-214ENST00000532737 TSPY4P0CV99 314 aa38.16■■■■□ 3.7
USP48-214ENST00000532737 TSPY10P0CW01 314 aa38.16■■■■□ 3.7
USP48-214ENST00000532737 RIMS1Q86UR5 1692 aaKnown RBP38.15■■■■□ 3.7
USP48-214ENST00000532737 RTEL1-TNFRSF6BF6WH68 1400 aa38.14■■■■□ 3.7
USP48-214ENST00000532737 C9orf84Q5VXU9 1444 aa38.14■■■■□ 3.7
USP48-214ENST00000532737 ABCC5O15440 1437 aa38.13■■■■□ 3.7
USP48-214ENST00000532737 DAPK1P53355 1430 aa38.08■■■■□ 3.69
USP48-214ENST00000532737 DNMT1P26358 1616 aaKnown RBP38.05■■■■□ 3.68
USP48-214ENST00000532737 REREQ9P2R6 1566 aa38.03■■■■□ 3.68
USP48-214ENST00000532737 MAST1Q9Y2H9 1570 aa38.03■■■■□ 3.68
USP48-214ENST00000532737 RRBP1Q9P2E9 1410 aaKnown RBP38■■■■□ 3.67
USP48-214ENST00000532737 A2MP01023 1474 aa38■■■■□ 3.67
USP48-214ENST00000532737 LMTK3Q96Q04 1460 aa38■■■■□ 3.67
USP48-214ENST00000532737 SHANK2Q9UPX8 1470 aa37.99■■■■□ 3.67
USP48-214ENST00000532737 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP37.98■■■■□ 3.67
USP48-214ENST00000532737 MLECQ14165 292 aa37.96■■■■□ 3.67
USP48-214ENST00000532737 CHIC2Q9UKJ5 165 aa37.96■■■■□ 3.67
USP48-214ENST00000532737 FER1L4A9Z1Z3 1794 aa37.96■■■■□ 3.67
USP48-214ENST00000532737 CROCC2H7BZ55 1655 aa37.95■■■■□ 3.67
USP48-214ENST00000532737 AGLP35573 1532 aa37.95■■■■□ 3.67
USP48-214ENST00000532737 DHX29Q7Z478 1369 aaKnown RBP37.93■■■■□ 3.66
USP48-214ENST00000532737 ADGBQ8N7X0 1667 aa37.92■■■■□ 3.66
USP48-214ENST00000532737 PLXNC1O60486 1568 aa37.91■■■■□ 3.66
USP48-214ENST00000532737 PTPRKQ15262 1439 aa37.9■■■■□ 3.66
USP48-214ENST00000532737 ITGAEP38570 1179 aa37.87■■■■□ 3.65
USP48-214ENST00000532737 RRP7BPQ9NSQ0 103 aa37.87■■■■□ 3.65
USP48-214ENST00000532737 ANKRD30AQ9BXX3 1397 aa37.83■■■■□ 3.65
USP48-214ENST00000532737 KIF15Q9NS87 1388 aa37.83■■■■□ 3.65
USP48-214ENST00000532737 NCOA1Q15788 1441 aa37.82■■■■□ 3.64
USP48-214ENST00000532737 ADGRL2O95490 1459 aa37.8■■■■□ 3.64
USP48-214ENST00000532737 KIF3BO15066 747 aa37.78■■■■□ 3.64
USP48-214ENST00000532737 DUOX2Q9NRD8 1548 aa37.77■■■■□ 3.64
USP48-214ENST00000532737 GGT6Q6P531 493 aa37.75■■■■□ 3.63
USP48-214ENST00000532737 PLPPR3Q6T4P5 718 aa37.72■■■■□ 3.63
USP48-214ENST00000532737 ROCK1Q13464 1354 aa37.7■■■■□ 3.63
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms