RNA–Protein interactions for RNA: ENST00000530927.5

GMDS-208, Transcript of GDP-mannose 4,6-dehydratase, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene GMDS, Length 1,440 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GMDS-208ENST00000530927 CDC42BPAQ5VT25 1732 aa29.8■■■□□ 2.36
GMDS-208ENST00000530927 EFCAB2Q5VUJ9 269 aa29.79■■■□□ 2.36
GMDS-208ENST00000530927 SCAPERQ9BY12 1400 aa29.77■■■□□ 2.36
GMDS-208ENST00000530927 TIAM1Q13009 1591 aa29.76■■■□□ 2.35
GMDS-208ENST00000530927 KDM4FA0A1W2PPD8 638 aa29.76■■■□□ 2.35
GMDS-208ENST00000530927 EHBP1L1Q8N3D4 1523 aa29.75■■■□□ 2.35
GMDS-208ENST00000530927 GPATCH8Q9UKJ3 1502 aaKnown RBP29.72■■■□□ 2.35
GMDS-208ENST00000530927 POGZQ7Z3K3 1410 aa29.71■■■□□ 2.35
GMDS-208ENST00000530927 ARHGEF12Q9NZN5 1544 aa29.68■■■□□ 2.34
GMDS-208ENST00000530927 AEBP2Q6ZN18 517 aaPredicted RBP29.67■■■□□ 2.34
GMDS-208ENST00000530927 ZMYM4Q5VZL5 1548 aa29.66■■■□□ 2.34
GMDS-208ENST00000530927 ABCC1P33527 1531 aa29.65■■■□□ 2.34
GMDS-208ENST00000530927 CCNB3Q8WWL7 1395 aa29.65■■■□□ 2.34
GMDS-208ENST00000530927 ZNF777Q9ULD5 760 aaPredicted RBP29.65■■■□□ 2.34
GMDS-208ENST00000530927 SAMD9LQ8IVG5 1584 aa29.65■■■□□ 2.34
GMDS-208ENST00000530927 ARHGEF40Q8TER5 1519 aa29.65■■■□□ 2.34
GMDS-208ENST00000530927 YEATS2Q9ULM3 1422 aa29.64■■■□□ 2.34
GMDS-208ENST00000530927 KANK4Q5T7N3 995 aaPredicted RBP29.64■■■□□ 2.34
GMDS-208ENST00000530927 LRRC9Q6ZRR7 1453 aa29.63■■■□□ 2.33
GMDS-208ENST00000530927 AFAP1Q8N556 730 aa29.62■■■□□ 2.33
GMDS-208ENST00000530927 ITSN2Q9NZM3 1697 aa29.61■■■□□ 2.33
GMDS-208ENST00000530927 NCOA2Q15596 1464 aa29.61■■■□□ 2.33
GMDS-208ENST00000530927 TRAPPC8Q9Y2L5 1435 aa29.6■■■□□ 2.33
GMDS-208ENST00000530927 SUPT6HQ7KZ85 1726 aaKnown RBP29.6■■■□□ 2.33
GMDS-208ENST00000530927 ZFYVE16Q7Z3T8 1539 aa29.59■■■□□ 2.33
GMDS-208ENST00000530927 CFDP1Q9UEE9 299 aaPredicted RBP29.58■■■□□ 2.33
GMDS-208ENST00000530927 ZNF518AQ6AHZ1 1483 aa29.58■■■□□ 2.33
GMDS-208ENST00000530927 SIGLEC1Q9BZZ2 1709 aa29.57■■■□□ 2.32
GMDS-208ENST00000530927 MAP3K1Q13233 1512 aa29.56■■■□□ 2.32
GMDS-208ENST00000530927 SYCP2Q9BX26 1530 aa29.56■■■□□ 2.32
GMDS-208ENST00000530927 KDM5CP41229 1560 aa29.56■■■□□ 2.32
GMDS-208ENST00000530927 ZNF644Q9H582 1327 aaPredicted RBP29.55■■■□□ 2.32
GMDS-208ENST00000530927 HNRNPMP52272 730 aaKnown RBP eCLIP29.53■■■□□ 2.328e-7■■■■□ 20.9
GMDS-208ENST00000530927 MAGI2Q86UL8 1455 aa29.52■■■□□ 2.32
GMDS-208ENST00000530927 HECW2Q9P2P5 1572 aa29.49■■■□□ 2.31
GMDS-208ENST00000530927 ARID4BQ4LE39 1312 aaPredicted RBP29.48■■■□□ 2.31
GMDS-208ENST00000530927 MYT1LQ9UL68 1186 aa29.46■■■□□ 2.31
GMDS-208ENST00000530927 ABCA6Q8N139 1617 aa29.45■■■□□ 2.3
GMDS-208ENST00000530927 APLP2Q06481 763 aa29.44■■■□□ 2.3
GMDS-208ENST00000530927 DIP2CQ9Y2E4 1556 aa29.44■■■□□ 2.3
GMDS-208ENST00000530927 BCORL1Q5H9F3 1711 aa29.44■■■□□ 2.3
GMDS-208ENST00000530927 ATP10AO60312 1499 aa29.43■■■□□ 2.3
GMDS-208ENST00000530927 KIAA1107Q9UPP5 1409 aa29.43■■■□□ 2.3
GMDS-208ENST00000530927 KIDINS220Q9ULH0 1771 aa29.42■■■□□ 2.3
GMDS-208ENST00000530927 MLH3Q9UHC1 1453 aa29.42■■■□□ 2.3
GMDS-208ENST00000530927 PLEKHH2Q8IVE3 1493 aa29.41■■■□□ 2.3
GMDS-208ENST00000530927 ADAMTSL3P82987 1691 aa29.41■■■□□ 2.3
GMDS-208ENST00000530927 CAMSAP2Q08AD1 1489 aa29.4■■■□□ 2.3
GMDS-208ENST00000530927 C9orf84Q5VXU9 1444 aa29.4■■■□□ 2.3
GMDS-208ENST00000530927 MBD5Q9P267 1494 aa29.38■■■□□ 2.29
GMDS-208ENST00000530927 MADDQ8WXG6 1647 aa29.37■■■□□ 2.29
GMDS-208ENST00000530927 MLECQ14165 292 aa29.36■■■□□ 2.29
GMDS-208ENST00000530927 SPAG9O60271 1321 aaKnown RBP29.34■■■□□ 2.29
GMDS-208ENST00000530927 INO80Q9ULG1 1556 aaPredicted RBP29.33■■■□□ 2.29
GMDS-208ENST00000530927 MYOM3Q5VTT5 1437 aa29.32■■■□□ 2.28
GMDS-208ENST00000530927 ATP7AQ04656 1500 aa29.32■■■□□ 2.28
GMDS-208ENST00000530927 RIMS1Q86UR5 1692 aaKnown RBP29.27■■■□□ 2.28
GMDS-208ENST00000530927 REREQ9P2R6 1566 aa29.27■■■□□ 2.28
GMDS-208ENST00000530927 PTPRMP28827 1452 aa29.26■■■□□ 2.27
GMDS-208ENST00000530927 CCDC141Q6ZP82 1450 aa29.25■■■□□ 2.27
GMDS-208ENST00000530927 MIA2Q96PC5 1412 aa29.22■■■□□ 2.27
GMDS-208ENST00000530927 PPARGC1BQ86YN6 1023 aaKnown RBP29.21■■■□□ 2.27
GMDS-208ENST00000530927 ARHGEF5Q12774 1597 aa29.21■■■□□ 2.27
GMDS-208ENST00000530927 FER1L4A9Z1Z3 1794 aa29.21■■■□□ 2.27
GMDS-208ENST00000530927 PLPPR3Q6T4P5 718 aa29.2■■■□□ 2.26
GMDS-208ENST00000530927 PTPN23Q9H3S7 1636 aa29.18■■■□□ 2.26
GMDS-208ENST00000530927 AGLP35573 1532 aa29.17■■■□□ 2.26
GMDS-208ENST00000530927 A2MP01023 1474 aa29.17■■■□□ 2.26
GMDS-208ENST00000530927 FGD6Q6ZV73 1430 aa29.16■■■□□ 2.26
GMDS-208ENST00000530927 PLXNC1O60486 1568 aa29.16■■■□□ 2.26
GMDS-208ENST00000530927 ADGBQ8N7X0 1667 aa29.16■■■□□ 2.26
GMDS-208ENST00000530927 RTEL1-TNFRSF6BF6WH68 1400 aa29.14■■■□□ 2.26
GMDS-208ENST00000530927 RSPH4AQ5TD94 716 aa29.11■■■□□ 2.25
GMDS-208ENST00000530927 TCOF1Q13428 1488 aaKnown RBP29.09■■■□□ 2.25
GMDS-208ENST00000530927 TSPY4P0CV99 314 aa29.07■■■□□ 2.24
GMDS-208ENST00000530927 TSPY10P0CW01 314 aa29.07■■■□□ 2.24
GMDS-208ENST00000530927 ABCC5O15440 1437 aa29.06■■■□□ 2.24
GMDS-208ENST00000530927 MAST1Q9Y2H9 1570 aa29.06■■■□□ 2.24
GMDS-208ENST00000530927 CEBPAP49715 358 aaPredicted RBP29.05■■■□□ 2.24
GMDS-208ENST00000530927 CROCC2H7BZ55 1655 aa29.04■■■□□ 2.24
GMDS-208ENST00000530927 DHX29Q7Z478 1369 aaKnown RBP29.03■■■□□ 2.24
GMDS-208ENST00000530927 DNMT1P26358 1616 aaKnown RBP29.01■■■□□ 2.24
GMDS-208ENST00000530927 DAPK1P53355 1430 aa29.01■■■□□ 2.23
GMDS-208ENST00000530927 GGT6Q6P531 493 aa29■■■□□ 2.23
GMDS-208ENST00000530927 FAM50AQ14320 339 aaKnown RBP28.99■■■□□ 2.23
GMDS-208ENST00000530927 C3P01024 1663 aa28.97■■■□□ 2.23
GMDS-208ENST00000530927 KIF3BO15066 747 aa28.95■■■□□ 2.23
GMDS-208ENST00000530927 CLTCQ00610 1675 aaKnown RBP28.95■■■□□ 2.23
GMDS-208ENST00000530927 SHANK2Q9UPX8 1470 aa28.95■■■□□ 2.22
GMDS-208ENST00000530927 CHIC2Q9UKJ5 165 aa28.94■■■□□ 2.22
GMDS-208ENST00000530927 ESF1Q9H501 851 aaKnown RBP28.94■■■□□ 2.22
GMDS-208ENST00000530927 LMTK3Q96Q04 1460 aa28.92■■■□□ 2.22
GMDS-208ENST00000530927 RRP7BPQ9NSQ0 103 aa28.9■■■□□ 2.22
GMDS-208ENST00000530927 KIF15Q9NS87 1388 aa28.88■■■□□ 2.21
GMDS-208ENST00000530927 CNTLNQ9NXG0 1405 aa28.88■■■□□ 2.21
GMDS-208ENST00000530927 MROH2AA6NES4 1674 aa28.86■■■□□ 2.21
GMDS-208ENST00000530927 ZMYM3Q14202 1370 aa28.86■■■□□ 2.21
GMDS-208ENST00000530927 DUOX2Q9NRD8 1548 aa28.85■■■□□ 2.21
GMDS-208ENST00000530927 PTPRKQ15262 1439 aa28.84■■■□□ 2.21
GMDS-208ENST00000530927 HSPA2P54652 639 aa28.82■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms