RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 EFCAB2Q5VUJ9 269 aa21.45■■□□□ 1.02
VPS28-211ENST00000530790 SCAPERQ9BY12 1400 aa21.45■■□□□ 1.02
VPS28-211ENST00000530790 ZFYVE16Q7Z3T8 1539 aa21.43■■□□□ 1.02
VPS28-211ENST00000530790 PREX2Q70Z35 1606 aa21.42■■□□□ 1.02
VPS28-211ENST00000530790 MAGI2Q86UL8 1455 aa21.41■■□□□ 1.02
VPS28-211ENST00000530790 ZNF518AQ6AHZ1 1483 aa21.38■■□□□ 1.01
VPS28-211ENST00000530790 CDC42BPBQ9Y5S2 1711 aa21.38■■□□□ 1.01
VPS28-211ENST00000530790 ARID4BQ4LE39 1312 aaPredicted RBP21.37■■□□□ 1.01
VPS28-211ENST00000530790 YEATS2Q9ULM3 1422 aa21.37■■□□□ 1.01
VPS28-211ENST00000530790 BCORL1Q5H9F3 1711 aa21.36■■□□□ 1.01
VPS28-211ENST00000530790 ADAMTSL3P82987 1691 aa21.36■■□□□ 1.01
VPS28-211ENST00000530790 ABCC1P33527 1531 aa21.34■■□□□ 1.01
VPS28-211ENST00000530790 CDC42BPAQ5VT25 1732 aa21.33■■□□□ 1.01
VPS28-211ENST00000530790 KDM5CP41229 1560 aa21.33■■□□□ 1.01
VPS28-211ENST00000530790 MTUS2Q5JR59 1369 aa21.33■■□□□ 1
VPS28-211ENST00000530790 EHBP1L1Q8N3D4 1523 aa21.31■■□□□ 1
VPS28-211ENST00000530790 MADDQ8WXG6 1647 aa21.3■■□□□ 1
VPS28-211ENST00000530790 HECW2Q9P2P5 1572 aa21.3■■□□□ 1
VPS28-211ENST00000530790 ITSN2Q9NZM3 1697 aa21.29■■□□□ 1
VPS28-211ENST00000530790 PTPRMP28827 1452 aa21.29■■□□□ 1
VPS28-211ENST00000530790 C9orf84Q5VXU9 1444 aa21.29■■□□□ 1
VPS28-211ENST00000530790 LOC105371045A0A1W2PR82 267 aa21.28■■□□□ 1
VPS28-211ENST00000530790 ATP10AO60312 1499 aa21.27■■□□□ 1
VPS28-211ENST00000530790 SIGLEC1Q9BZZ2 1709 aa21.27■■□□□ 1
VPS28-211ENST00000530790 GPATCH8Q9UKJ3 1502 aaKnown RBP21.27■■□□□ 1
VPS28-211ENST00000530790 ARHGEF12Q9NZN5 1544 aa21.26■□□□□ 0.99
VPS28-211ENST00000530790 AFAP1Q8N556 730 aa21.26■□□□□ 0.99
VPS28-211ENST00000530790 CCNB3Q8WWL7 1395 aa21.25■□□□□ 0.99
VPS28-211ENST00000530790 SAMD9LQ8IVG5 1584 aa21.25■□□□□ 0.99
VPS28-211ENST00000530790 TRAPPC8Q9Y2L5 1435 aa21.24■□□□□ 0.99
VPS28-211ENST00000530790 DIP2CQ9Y2E4 1556 aa21.23■□□□□ 0.99
VPS28-211ENST00000530790 VPS8Q8N3P4 1428 aa21.23■□□□□ 0.99
VPS28-211ENST00000530790 MYT1LQ9UL68 1186 aa21.23■□□□□ 0.99
VPS28-211ENST00000530790 MLH3Q9UHC1 1453 aa21.23■□□□□ 0.99
VPS28-211ENST00000530790 RIMS1Q86UR5 1692 aaKnown RBP21.23■□□□□ 0.99
VPS28-211ENST00000530790 SYCP2Q9BX26 1530 aa21.23■□□□□ 0.99
VPS28-211ENST00000530790 ZNF777Q9ULD5 760 aaPredicted RBP21.22■□□□□ 0.99
VPS28-211ENST00000530790 TIAM1Q13009 1591 aa21.22■□□□□ 0.99
VPS28-211ENST00000530790 ABCA6Q8N139 1617 aa21.21■□□□□ 0.99
VPS28-211ENST00000530790 PLEKHH2Q8IVE3 1493 aa21.2■□□□□ 0.98
VPS28-211ENST00000530790 CFDP1Q9UEE9 299 aaPredicted RBP21.2■□□□□ 0.98
VPS28-211ENST00000530790 REREQ9P2R6 1566 aa21.19■□□□□ 0.98
VPS28-211ENST00000530790 FER1L4A9Z1Z3 1794 aa21.18■□□□□ 0.98
VPS28-211ENST00000530790 MLECQ14165 292 aa21.17■□□□□ 0.98
VPS28-211ENST00000530790 KIAA1107Q9UPP5 1409 aa21.17■□□□□ 0.98
VPS28-211ENST00000530790 SUPT6HQ7KZ85 1726 aaKnown RBP21.16■□□□□ 0.98
VPS28-211ENST00000530790 KIDINS220Q9ULH0 1771 aa21.15■□□□□ 0.98
VPS28-211ENST00000530790 NCOA2Q15596 1464 aa21.13■□□□□ 0.97
VPS28-211ENST00000530790 AGLP35573 1532 aa21.11■□□□□ 0.97
VPS28-211ENST00000530790 HNRNPMP52272 730 aaKnown RBP eCLIP21.11■□□□□ 0.97
VPS28-211ENST00000530790 INO80Q9ULG1 1556 aaPredicted RBP21.1■□□□□ 0.97
VPS28-211ENST00000530790 SPAG9O60271 1321 aaKnown RBP21.1■□□□□ 0.97
VPS28-211ENST00000530790 ATP7AQ04656 1500 aa21.1■□□□□ 0.97
VPS28-211ENST00000530790 LRRC9Q6ZRR7 1453 aa21.1■□□□□ 0.97
VPS28-211ENST00000530790 MAP3K1Q13233 1512 aa21.09■□□□□ 0.97
VPS28-211ENST00000530790 PLPPR3Q6T4P5 718 aa21.07■□□□□ 0.96
VPS28-211ENST00000530790 LMTK3Q96Q04 1460 aa21.06■□□□□ 0.96
VPS28-211ENST00000530790 ZNF644Q9H582 1327 aaPredicted RBP21.05■□□□□ 0.96
VPS28-211ENST00000530790 CAMSAP2Q08AD1 1489 aa21.04■□□□□ 0.96
VPS28-211ENST00000530790 MBD5Q9P267 1494 aa21.04■□□□□ 0.96
VPS28-211ENST00000530790 PLXNC1O60486 1568 aa21.02■□□□□ 0.95
VPS28-211ENST00000530790 CCDC141Q6ZP82 1450 aa21.01■□□□□ 0.95
VPS28-211ENST00000530790 A2MP01023 1474 aa21.01■□□□□ 0.95
VPS28-211ENST00000530790 ESF1Q9H501 851 aaKnown RBP20.99■□□□□ 0.95
VPS28-211ENST00000530790 ADGBQ8N7X0 1667 aa20.99■□□□□ 0.95
VPS28-211ENST00000530790 RTEL1-TNFRSF6BF6WH68 1400 aa20.97■□□□□ 0.95
VPS28-211ENST00000530790 KANK4Q5T7N3 995 aaPredicted RBP20.97■□□□□ 0.95
VPS28-211ENST00000530790 CNTLNQ9NXG0 1405 aa20.96■□□□□ 0.95
VPS28-211ENST00000530790 APLP2Q06481 763 aa20.96■□□□□ 0.95
VPS28-211ENST00000530790 PREX1Q8TCU6 1659 aa20.96■□□□□ 0.95
VPS28-211ENST00000530790 ARHGEF5Q12774 1597 aa20.95■□□□□ 0.94
VPS28-211ENST00000530790 C3P01024 1663 aa20.94■□□□□ 0.94
VPS28-211ENST00000530790 CEBPAP49715 358 aaPredicted RBP20.94■□□□□ 0.94
VPS28-211ENST00000530790 MYOM3Q5VTT5 1437 aa20.94■□□□□ 0.94
VPS28-211ENST00000530790 RSPH4AQ5TD94 716 aa20.92■□□□□ 0.94
VPS28-211ENST00000530790 MIA2Q96PC5 1412 aa20.92■□□□□ 0.94
VPS28-211ENST00000530790 MROH2AA6NES4 1674 aa20.9■□□□□ 0.94
VPS28-211ENST00000530790 UHRF1BP1Q6BDS2 1440 aa20.89■□□□□ 0.94
VPS28-211ENST00000530790 HSPA2P54652 639 aa20.89■□□□□ 0.93
VPS28-211ENST00000530790 DHX29Q7Z478 1369 aaKnown RBP20.86■□□□□ 0.93
VPS28-211ENST00000530790 TSPY4P0CV99 314 aa20.86■□□□□ 0.93
VPS28-211ENST00000530790 TSPY10P0CW01 314 aa20.86■□□□□ 0.93
VPS28-211ENST00000530790 CLTCQ00610 1675 aaKnown RBP20.86■□□□□ 0.93
VPS28-211ENST00000530790 MAST1Q9Y2H9 1570 aa20.85■□□□□ 0.93
VPS28-211ENST00000530790 GGT6Q6P531 493 aa20.84■□□□□ 0.93
VPS28-211ENST00000530790 NPATQ14207 1427 aa20.83■□□□□ 0.93
VPS28-211ENST00000530790 ZMYM3Q14202 1370 aa20.82■□□□□ 0.92
VPS28-211ENST00000530790 PTPN23Q9H3S7 1636 aa20.81■□□□□ 0.92
VPS28-211ENST00000530790 PPP6R1Q9UPN7 881 aa20.8■□□□□ 0.92
VPS28-211ENST00000530790 FAM135AQ9P2D6 1515 aa20.79■□□□□ 0.92
VPS28-211ENST00000530790 FGD6Q6ZV73 1430 aa20.78■□□□□ 0.92
VPS28-211ENST00000530790 SETD1BQ9UPS6 1966 aaKnown RBP20.78■□□□□ 0.92
VPS28-211ENST00000530790 KIF3BO15066 747 aa20.78■□□□□ 0.92
VPS28-211ENST00000530790 KDM5DQ9BY66 1539 aa20.78■□□□□ 0.92
VPS28-211ENST00000530790 CROCC2H7BZ55 1655 aa20.77■□□□□ 0.91
VPS28-211ENST00000530790 SHANK2Q9UPX8 1470 aa20.76■□□□□ 0.91
VPS28-211ENST00000530790 TCOF1Q13428 1488 aaKnown RBP20.75■□□□□ 0.91
VPS28-211ENST00000530790 MYO3AQ8NEV4 1616 aa20.75■□□□□ 0.91
VPS28-211ENST00000530790 PTPRKQ15262 1439 aa20.74■□□□□ 0.91
VPS28-211ENST00000530790 EIF2AK4Q9P2K8 1649 aaKnown RBP20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms