RNA–Protein interactions for RNA: ENST00000530041.5

USP47-209, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 3

Gene USP47, Length 767 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-209ENST00000530041 LCE2DQ5TA82 110 aaPredicted RBP12.96□□□□□ -0.33
USP47-209ENST00000530041 SPRYD3Q8NCJ5 442 aa12.96□□□□□ -0.33
USP47-209ENST00000530041 TMC2Q8TDI7 906 aa12.96□□□□□ -0.33
USP47-209ENST00000530041 ST18O60284 1047 aa12.94□□□□□ -0.34
USP47-209ENST00000530041 HOXB3P14651 431 aaPredicted RBP12.93□□□□□ -0.34
USP47-209ENST00000530041 DOK7Q18PE1 504 aa12.91□□□□□ -0.34
USP47-209ENST00000530041 PAXIP1Q6ZW49 1069 aaPredicted RBP12.9□□□□□ -0.34
USP47-209ENST00000530041 GPHNQ9NQX3 736 aaPredicted RBP12.9□□□□□ -0.34
USP47-209ENST00000530041 CFAP44Q96MT7 982 aa12.89□□□□□ -0.35
USP47-209ENST00000530041 ZNF710Q8N1W2 664 aa12.86□□□□□ -0.35
USP47-209ENST00000530041 CRISPLD2Q9H0B8 497 aa12.86□□□□□ -0.35
USP47-209ENST00000530041 RIMBP2O15034 1052 aa12.85□□□□□ -0.35
USP47-209ENST00000530041 FOXK1P85037 733 aa12.85□□□□□ -0.35
USP47-209ENST00000530041 PDE4AP27815 886 aa12.84□□□□□ -0.35
USP47-209ENST00000530041 NCKAP5LQ9HCH0 1330 aa12.84□□□□□ -0.35
USP47-209ENST00000530041 POTEMA6NI47 508 aa12.83□□□□□ -0.36
USP47-209ENST00000530041 POTEGQ6S5H5 508 aa12.83□□□□□ -0.36
USP47-209ENST00000530041 ZSWIM6Q9HCJ5 1215 aa12.83□□□□□ -0.36
USP47-209ENST00000530041 DSG2Q14126 1118 aa12.81□□□□□ -0.36
USP47-209ENST00000530041 CADPS2Q86UW7 1296 aa12.81□□□□□ -0.36
USP47-209ENST00000530041 PLPP6Q8IY26 295 aa12.8□□□□□ -0.36
USP47-209ENST00000530041 SLC34A2O95436 690 aa12.78□□□□□ -0.36
USP47-209ENST00000530041 HOXB1P14653 301 aaPredicted RBP12.78□□□□□ -0.36
USP47-209ENST00000530041 MARVELD3Q96A59 401 aa12.77□□□□□ -0.37
USP47-209ENST00000530041 PPP1R15BQ5SWA1 713 aa12.76□□□□□ -0.37
USP47-209ENST00000530041 GPR153Q6NV75 609 aa12.76□□□□□ -0.37
USP47-209ENST00000530041 LARP6Q9BRS8 491 aaKnown RBP12.76□□□□□ -0.37
USP47-209ENST00000530041 EMP3P54852 163 aa12.74□□□□□ -0.37
USP47-209ENST00000530041 MFSD10Q14728 455 aa12.74□□□□□ -0.37
USP47-209ENST00000530041 DDX27Q96GQ7 796 aaKnown RBP12.74□□□□□ -0.37
USP47-209ENST00000530041 ARSIQ5FYB1 569 aa12.72□□□□□ -0.37
USP47-209ENST00000530041 PTCD2Q8WV60 388 aaKnown RBP12.7□□□□□ -0.38
USP47-209ENST00000530041 PCDHGA4Q9Y5G9 962 aa12.7□□□□□ -0.38
USP47-209ENST00000530041 KHSRPQ92945 711 aaKnown RBP eCLIP12.68□□□□□ -0.38
USP47-209ENST00000530041 PLCB2Q00722 1185 aa12.66□□□□□ -0.38
USP47-209ENST00000530041 FAM205CA6NFA0 338 aa12.65□□□□□ -0.38
USP47-209ENST00000530041 PCDH10Q9P2E7 1040 aa12.65□□□□□ -0.38
USP47-209ENST00000530041 TBC1D12O60347 775 aa12.64□□□□□ -0.39
USP47-209ENST00000530041 ERBB3P21860 1342 aa12.63□□□□□ -0.39
USP47-209ENST00000530041 NUDT7P0C024 238 aa12.63□□□□□ -0.39
USP47-209ENST00000530041 OXER1Q8TDS5 423 aa12.63□□□□□ -0.39
USP47-209ENST00000530041 HS3ST6Q96QI5 342 aa12.63□□□□□ -0.39
USP47-209ENST00000530041 TSHZ2Q9NRE2 1034 aa12.63□□□□□ -0.39
USP47-209ENST00000530041 POTEB3A0JP26 581 aa12.6□□□□□ -0.39
USP47-209ENST00000530041 POTEBQ6S5H4 581 aa12.6□□□□□ -0.39
USP47-209ENST00000530041 CDAN1Q8IWY9 1227 aa12.6□□□□□ -0.39
USP47-209ENST00000530041 UPF1Q92900 1129 aaKnown RBP eCLIP12.6□□□□□ -0.39
USP47-209ENST00000530041 KDM4FA0A1W2PPD8 638 aa12.58□□□□□ -0.4
USP47-209ENST00000530041 ZNF316A6NFI3 1004 aaPredicted RBP12.58□□□□□ -0.4
USP47-209ENST00000530041 CAMK2BQ13554 666 aa12.58□□□□□ -0.4
USP47-209ENST00000530041 VARS2Q5ST30 1063 aaKnown RBP12.58□□□□□ -0.4
USP47-209ENST00000530041 EMILIN3Q9NT22 766 aa12.57□□□□□ -0.4
USP47-209ENST00000530041 WDR70Q9NW82 654 aa12.56□□□□□ -0.4
USP47-209ENST00000530041 LHX6Q9UPM6 363 aa12.55□□□□□ -0.4
USP47-209ENST00000530041 MAP3K9P80192 1104 aa12.52□□□□□ -0.41
USP47-209ENST00000530041 PSDA5PKW4 1024 aaPredicted RBP12.49□□□□□ -0.41
USP47-209ENST00000530041 EVI5O60447 810 aa12.49□□□□□ -0.41
USP47-209ENST00000530041 E2F4Q16254 413 aa12.49□□□□□ -0.41
USP47-209ENST00000530041 ZNF687Q8N1G0 1237 aa12.49□□□□□ -0.41
USP47-209ENST00000530041 ANO8Q9HCE9 1232 aaPredicted RBP12.47□□□□□ -0.41
USP47-209ENST00000530041 DPYSL4O14531 572 aa12.45□□□□□ -0.42
USP47-209ENST00000530041 HAP1P54257 671 aaPredicted RBP12.45□□□□□ -0.42
USP47-209ENST00000530041 KRTAP3-3Q9BYR6 98 aa12.44□□□□□ -0.42
USP47-209ENST00000530041 KRTAP3-2Q9BYR7 98 aa12.44□□□□□ -0.42
USP47-209ENST00000530041 ARIH1Q9Y4X5 557 aaPredicted RBP12.42□□□□□ -0.42
USP47-209ENST00000530041 PPP4R3BQ5MIZ7 849 aa12.41□□□□□ -0.42
USP47-209ENST00000530041 PBX2P40425 430 aa12.38□□□□□ -0.43
USP47-209ENST00000530041 FOSBP53539 338 aa12.38□□□□□ -0.43
USP47-209ENST00000530041 ZNF454Q8N9F8 522 aa12.38□□□□□ -0.43
USP47-209ENST00000530041 JPH4Q96JJ6 628 aa12.38□□□□□ -0.43
USP47-209ENST00000530041 PDIA6Q15084 440 aa12.36□□□□□ -0.43
USP47-209ENST00000530041 SPDYE16A6NNV3 312 aaPredicted RBP12.35□□□□□ -0.43
USP47-209ENST00000530041 POTEEQ6S8J3 1075 aa12.34□□□□□ -0.43
USP47-209ENST00000530041 PTGER2P43116 358 aa12.33□□□□□ -0.44
USP47-209ENST00000530041 ARHGAP33O14559 1287 aa12.32□□□□□ -0.44
USP47-209ENST00000530041 KCNV2Q8TDN2 545 aa12.32□□□□□ -0.44
USP47-209ENST00000530041 ARHGEF1Q92888 912 aaKnown RBP12.31□□□□□ -0.44
USP47-209ENST00000530041 ZDHHC16Q969W1 377 aa12.31□□□□□ -0.44
USP47-209ENST00000530041 AXIN2Q9Y2T1 843 aa12.31□□□□□ -0.44
USP47-209ENST00000530041 PCDHGA10Q9Y5H3 936 aa12.31□□□□□ -0.44
USP47-209ENST00000530041 PHF14O94880 888 aa12.3□□□□□ -0.44
USP47-209ENST00000530041 P3H3Q8IVL6 736 aa12.3□□□□□ -0.44
USP47-209ENST00000530041 BCL2L12Q9HB09 334 aa12.3□□□□□ -0.44
USP47-209ENST00000530041 LSM11P83369 360 aaKnown RBP eCLIP12.29□□□□□ -0.44
USP47-209ENST00000530041 SPNS2Q8IVW8 549 aa12.29□□□□□ -0.44
USP47-209ENST00000530041 PLSCR2Q9NRY7 297 aa12.28□□□□□ -0.44
USP47-209ENST00000530041 KDM2AQ9Y2K7 1162 aa12.28□□□□□ -0.44
USP47-209ENST00000530041 TYW1BQ6NUM6 668 aa12.27□□□□□ -0.45
USP47-209ENST00000530041 VSIG10Q8N0Z9 540 aa12.27□□□□□ -0.45
USP47-209ENST00000530041 PSEN2P49810 448 aa12.26□□□□□ -0.45
USP47-209ENST00000530041 DDX12PQ92771 950 aa12.26□□□□□ -0.45
USP47-209ENST00000530041 FBXW7Q969H0 707 aa12.26□□□□□ -0.45
USP47-209ENST00000530041 KCNH8Q96L42 1107 aa12.26□□□□□ -0.45
USP47-209ENST00000530041 EPAS1Q99814 870 aa12.26□□□□□ -0.45
USP47-209ENST00000530041 ADAM33Q9BZ11 813 aa12.26□□□□□ -0.45
USP47-209ENST00000530041 ANKRD13DQ6ZTN6 518 aa12.25□□□□□ -0.45
USP47-209ENST00000530041 KCNK17Q96T54 332 aa12.25□□□□□ -0.45
USP47-209ENST00000530041 PTPREP23469 700 aa12.24□□□□□ -0.45
USP47-209ENST00000530041 DMRTA1Q5VZB9 504 aa12.23□□□□□ -0.45
USP47-209ENST00000530041 TK2O00142 265 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms