RNA–Protein interactions for RNA: ENST00000528336.1

PCF11-202, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 5

Gene PCF11, Length 1,041 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-202ENST00000528336 POTEB2H3BUK9 544 aa14.27□□□□□ -0.13
PCF11-202ENST00000528336 C3orf67Q6ZVT6 689 aa14.26□□□□□ -0.13
PCF11-202ENST00000528336 POTEJP0CG39 1038 aa14.24□□□□□ -0.13
PCF11-202ENST00000528336 CRISPLD2Q9H0B8 497 aa14.24□□□□□ -0.13
PCF11-202ENST00000528336 TMC2Q8TDI7 906 aa14.23□□□□□ -0.13
PCF11-202ENST00000528336 TMEM92Q6UXU6 159 aa14.2□□□□□ -0.14
PCF11-202ENST00000528336 GPHNQ9NQX3 736 aaPredicted RBP14.2□□□□□ -0.14
PCF11-202ENST00000528336 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.2□□□□□ -0.14
PCF11-202ENST00000528336 C2orf72A6NCS6 295 aa14.19□□□□□ -0.14
PCF11-202ENST00000528336 DDX27Q96GQ7 796 aaKnown RBP14.19□□□□□ -0.14
PCF11-202ENST00000528336 MFSD10Q14728 455 aa14.15□□□□□ -0.14
PCF11-202ENST00000528336 DSG2Q14126 1118 aa14.14□□□□□ -0.15
PCF11-202ENST00000528336 PPP1R15BQ5SWA1 713 aa14.13□□□□□ -0.15
PCF11-202ENST00000528336 KIF3CO14782 793 aa14.12□□□□□ -0.15
PCF11-202ENST00000528336 MAMSTRQ6ZN01 415 aa14.11□□□□□ -0.15
PCF11-202ENST00000528336 SCUBE2Q9NQ36 999 aa14.11□□□□□ -0.15
PCF11-202ENST00000528336 FOXK1P85037 733 aa14.1□□□□□ -0.15
PCF11-202ENST00000528336 E2F4Q16254 413 aa14.09□□□□□ -0.15
PCF11-202ENST00000528336 PLPP6Q8IY26 295 aa14.09□□□□□ -0.15
PCF11-202ENST00000528336 LHX8Q68G74 356 aa14.08□□□□□ -0.16
PCF11-202ENST00000528336 SLAIN1Q8ND83 568 aa14.07□□□□□ -0.16
PCF11-202ENST00000528336 KCNV2Q8TDN2 545 aa14.05□□□□□ -0.16
PCF11-202ENST00000528336 P3H3Q8IVL6 736 aa14.04□□□□□ -0.16
PCF11-202ENST00000528336 CAMK2BQ13554 666 aa14□□□□□ -0.17
PCF11-202ENST00000528336 OTUD5Q96G74 571 aa14□□□□□ -0.17
PCF11-202ENST00000528336 EMILIN3Q9NT22 766 aa13.97□□□□□ -0.17
PCF11-202ENST00000528336 UPF1Q92900 1129 aaKnown RBP eCLIP13.95□□□□□ -0.18
PCF11-202ENST00000528336 ARHGEF1Q92888 912 aaKnown RBP13.94□□□□□ -0.18
PCF11-202ENST00000528336 NBR1Q14596 966 aa13.93□□□□□ -0.18
PCF11-202ENST00000528336 BCANQ96GW7 911 aa13.93□□□□□ -0.18
PCF11-202ENST00000528336 DPYSL4O14531 572 aa13.91□□□□□ -0.18
PCF11-202ENST00000528336 MAP3K9P80192 1104 aa13.89□□□□□ -0.19
PCF11-202ENST00000528336 OXER1Q8TDS5 423 aa13.86□□□□□ -0.19
PCF11-202ENST00000528336 ARIH1Q9Y4X5 557 aaPredicted RBP13.86□□□□□ -0.19
PCF11-202ENST00000528336 SLC34A2O95436 690 aa13.85□□□□□ -0.19
PCF11-202ENST00000528336 HOXB3P14651 431 aaPredicted RBP13.84□□□□□ -0.19
PCF11-202ENST00000528336 DOK7Q18PE1 504 aa13.84□□□□□ -0.19
PCF11-202ENST00000528336 PTCD2Q8WV60 388 aaKnown RBP13.84□□□□□ -0.19
PCF11-202ENST00000528336 TBC1D12O60347 775 aa13.82□□□□□ -0.2
PCF11-202ENST00000528336 SNPHO15079 494 aa13.81□□□□□ -0.2
PCF11-202ENST00000528336 PCDHGA4Q9Y5G9 962 aa13.81□□□□□ -0.2
PCF11-202ENST00000528336 SEMA3EO15041 775 aa13.8□□□□□ -0.2
PCF11-202ENST00000528336 ZNF710Q8N1W2 664 aa13.8□□□□□ -0.2
PCF11-202ENST00000528336 SPDYE16A6NNV3 312 aaPredicted RBP13.77□□□□□ -0.21
PCF11-202ENST00000528336 RIMBP2O15034 1052 aa13.77□□□□□ -0.21
PCF11-202ENST00000528336 EVI5O60447 810 aa13.76□□□□□ -0.21
PCF11-202ENST00000528336 PDIA6Q15084 440 aa13.76□□□□□ -0.21
PCF11-202ENST00000528336 ARSIQ5FYB1 569 aa13.76□□□□□ -0.21
PCF11-202ENST00000528336 KHSRPQ92945 711 aaKnown RBP eCLIP13.75□□□□□ -0.21
PCF11-202ENST00000528336 GPR153Q6NV75 609 aa13.71□□□□□ -0.21
PCF11-202ENST00000528336 ZSWIM6Q9HCJ5 1215 aa13.71□□□□□ -0.21
PCF11-202ENST00000528336 ZNF316A6NFI3 1004 aaPredicted RBP13.7□□□□□ -0.22
PCF11-202ENST00000528336 NUDT7P0C024 238 aa13.7□□□□□ -0.22
PCF11-202ENST00000528336 MLLT3P42568 568 aaPredicted RBP13.7□□□□□ -0.22
PCF11-202ENST00000528336 TESPA1A2RU30 521 aaPredicted RBP13.69□□□□□ -0.22
PCF11-202ENST00000528336 GRXCR2A6NFK2 248 aa13.67□□□□□ -0.22
PCF11-202ENST00000528336 DDX12PQ92771 950 aa13.67□□□□□ -0.22
PCF11-202ENST00000528336 FAM163AQ96GL9 167 aaPredicted RBP13.66□□□□□ -0.22
PCF11-202ENST00000528336 ANO8Q9HCE9 1232 aaPredicted RBP13.66□□□□□ -0.22
PCF11-202ENST00000528336 KDM4FA0A1W2PPD8 638 aa13.64□□□□□ -0.23
PCF11-202ENST00000528336 TULP1O00294 542 aaPredicted RBP13.64□□□□□ -0.23
PCF11-202ENST00000528336 HOXB1P14653 301 aaPredicted RBP13.63□□□□□ -0.23
PCF11-202ENST00000528336 SMYD5Q6GMV2 418 aa13.63□□□□□ -0.23
PCF11-202ENST00000528336 ST18O60284 1047 aa13.61□□□□□ -0.23
PCF11-202ENST00000528336 PTGER2P43116 358 aa13.61□□□□□ -0.23
PCF11-202ENST00000528336 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.59□□□□□ -0.23
PCF11-202ENST00000528336 LHX6Q9UPM6 363 aa13.58□□□□□ -0.24
PCF11-202ENST00000528336 LMOD2Q6P5Q4 547 aa13.56□□□□□ -0.24
PCF11-202ENST00000528336 RBM26Q5T8P6 1007 aaKnown RBP13.55□□□□□ -0.24
PCF11-202ENST00000528336 ZNF454Q8N9F8 522 aa13.55□□□□□ -0.24
PCF11-202ENST00000528336 MARVELD3Q96A59 401 aa13.54□□□□□ -0.24
PCF11-202ENST00000528336 PCDHGA10Q9Y5H3 936 aa13.54□□□□□ -0.24
PCF11-202ENST00000528336 PHF14O94880 888 aa13.53□□□□□ -0.24
PCF11-202ENST00000528336 OSBPP22059 807 aa13.53□□□□□ -0.24
PCF11-202ENST00000528336 FOSBP53539 338 aa13.52□□□□□ -0.25
PCF11-202ENST00000528336 RBM33Q96EV2 1170 aaKnown RBP13.52□□□□□ -0.25
PCF11-202ENST00000528336 JPH4Q96JJ6 628 aa13.52□□□□□ -0.25
PCF11-202ENST00000528336 EMP3P54852 163 aa13.51□□□□□ -0.25
PCF11-202ENST00000528336 PRIM1P49642 420 aaKnown RBP13.5□□□□□ -0.25
PCF11-202ENST00000528336 EPAS1Q99814 870 aa13.5□□□□□ -0.25
PCF11-202ENST00000528336 TYW1BQ6NUM6 668 aa13.49□□□□□ -0.25
PCF11-202ENST00000528336 ERBB3P21860 1342 aa13.48□□□□□ -0.25
PCF11-202ENST00000528336 NUTM2FA1L443 756 aa13.47□□□□□ -0.25
PCF11-202ENST00000528336 TPRNQ4KMQ1 711 aa13.47□□□□□ -0.25
PCF11-202ENST00000528336 ZDHHC16Q969W1 377 aa13.47□□□□□ -0.25
PCF11-202ENST00000528336 PPP4R3BQ5MIZ7 849 aa13.46□□□□□ -0.25
PCF11-202ENST00000528336 LCE2DQ5TA82 110 aaPredicted RBP13.46□□□□□ -0.25
PCF11-202ENST00000528336 MAP3K7O43318 606 aa13.45□□□□□ -0.26
PCF11-202ENST00000528336 FBXW7Q969H0 707 aa13.45□□□□□ -0.26
PCF11-202ENST00000528336 PSDA5PKW4 1024 aaPredicted RBP13.44□□□□□ -0.26
PCF11-202ENST00000528336 FAM205CA6NFA0 338 aa13.44□□□□□ -0.26
PCF11-202ENST00000528336 EN1Q05925 392 aaPredicted RBP13.44□□□□□ -0.26
PCF11-202ENST00000528336 VARS2Q5ST30 1063 aaKnown RBP13.44□□□□□ -0.26
PCF11-202ENST00000528336 PRKCSHP14314 528 aaPredicted RBP13.43□□□□□ -0.26
PCF11-202ENST00000528336 GPIHBP1Q8IV16 184 aa13.43□□□□□ -0.26
PCF11-202ENST00000528336 ADAM33Q9BZ11 813 aa13.43□□□□□ -0.26
PCF11-202ENST00000528336 TSR1Q2NL82 804 aaKnown RBP13.4□□□□□ -0.26
PCF11-202ENST00000528336 C6orf132Q5T0Z8 1188 aa13.38□□□□□ -0.27
PCF11-202ENST00000528336 ZC3H15Q8WU90 426 aaKnown RBP13.38□□□□□ -0.27
PCF11-202ENST00000528336 CDHR5Q9HBB8 845 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 90.2 ms