RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 SIGLEC1Q9BZZ2 1709 aa16.5■□□□□ 0.23
VPS28-204ENST00000526054 MAGI2Q86UL8 1455 aa16.49■□□□□ 0.23
VPS28-204ENST00000526054 YEATS2Q9ULM3 1422 aa16.49■□□□□ 0.23
VPS28-204ENST00000526054 PCF11O94913 1555 aaKnown RBP16.47■□□□□ 0.23
VPS28-204ENST00000526054 SCAPERQ9BY12 1400 aa16.47■□□□□ 0.23
VPS28-204ENST00000526054 CDK11AQ9UQ88 783 aaPredicted RBP16.47■□□□□ 0.23
VPS28-204ENST00000526054 CLIP1P30622 1438 aa16.46■□□□□ 0.23
VPS28-204ENST00000526054 TROQ12816 1431 aaPredicted RBP16.46■□□□□ 0.23
VPS28-204ENST00000526054 FER1L4A9Z1Z3 1794 aa16.46■□□□□ 0.22
VPS28-204ENST00000526054 ARHGAP5Q13017 1502 aa16.45■□□□□ 0.22
VPS28-204ENST00000526054 LMTK3Q96Q04 1460 aa16.43■□□□□ 0.22
VPS28-204ENST00000526054 CCDC18Q5T9S5 1454 aa16.42■□□□□ 0.22
VPS28-204ENST00000526054 ZNF518AQ6AHZ1 1483 aa16.42■□□□□ 0.22
VPS28-204ENST00000526054 PREX2Q70Z35 1606 aa16.41■□□□□ 0.22
VPS28-204ENST00000526054 EFCAB2Q5VUJ9 269 aa16.41■□□□□ 0.22
VPS28-204ENST00000526054 CDC42BPBQ9Y5S2 1711 aa16.4■□□□□ 0.22
VPS28-204ENST00000526054 KDM5CP41229 1560 aa16.4■□□□□ 0.22
VPS28-204ENST00000526054 C9orf84Q5VXU9 1444 aa16.4■□□□□ 0.22
VPS28-204ENST00000526054 CASKIN1Q8WXD9 1431 aa16.4■□□□□ 0.22
VPS28-204ENST00000526054 ATP10AO60312 1499 aa16.39■□□□□ 0.21
VPS28-204ENST00000526054 FYCO1Q9BQS8 1478 aa16.37■□□□□ 0.21
VPS28-204ENST00000526054 ARHGEF12Q9NZN5 1544 aa16.37■□□□□ 0.21
VPS28-204ENST00000526054 MLECQ14165 292 aa16.36■□□□□ 0.21
VPS28-204ENST00000526054 PLPPR3Q6T4P5 718 aa16.36■□□□□ 0.21
VPS28-204ENST00000526054 ITSN2Q9NZM3 1697 aa16.36■□□□□ 0.21
VPS28-204ENST00000526054 ABCC1P33527 1531 aa16.35■□□□□ 0.21
VPS28-204ENST00000526054 DIP2CQ9Y2E4 1556 aa16.35■□□□□ 0.21
VPS28-204ENST00000526054 CDC42BPAQ5VT25 1732 aa16.34■□□□□ 0.21
VPS28-204ENST00000526054 ABCA6Q8N139 1617 aa16.34■□□□□ 0.21
VPS28-204ENST00000526054 REREQ9P2R6 1566 aa16.33■□□□□ 0.2
VPS28-204ENST00000526054 PREX1Q8TCU6 1659 aa16.31■□□□□ 0.2
VPS28-204ENST00000526054 AFAP1Q8N556 730 aa16.3■□□□□ 0.2
VPS28-204ENST00000526054 MYT1LQ9UL68 1186 aa16.3■□□□□ 0.2
VPS28-204ENST00000526054 MLH3Q9UHC1 1453 aa16.29■□□□□ 0.2
VPS28-204ENST00000526054 HSPA2P54652 639 aa16.28■□□□□ 0.2
VPS28-204ENST00000526054 TRAPPC8Q9Y2L5 1435 aa16.28■□□□□ 0.2
VPS28-204ENST00000526054 SAMD9LQ8IVG5 1584 aa16.26■□□□□ 0.19
VPS28-204ENST00000526054 KIDINS220Q9ULH0 1771 aa16.26■□□□□ 0.19
VPS28-204ENST00000526054 FBXO41Q8TF61 875 aa16.25■□□□□ 0.19
VPS28-204ENST00000526054 AGLP35573 1532 aa16.24■□□□□ 0.19
VPS28-204ENST00000526054 SYCP2Q9BX26 1530 aa16.24■□□□□ 0.19
VPS28-204ENST00000526054 CEP162Q5TB80 1403 aa16.23■□□□□ 0.19
VPS28-204ENST00000526054 LOC105371045A0A1W2PR82 267 aa16.23■□□□□ 0.19
VPS28-204ENST00000526054 C3P01024 1663 aa16.23■□□□□ 0.19
VPS28-204ENST00000526054 GPATCH8Q9UKJ3 1502 aaKnown RBP16.22■□□□□ 0.19
VPS28-204ENST00000526054 CEBPAP49715 358 aaPredicted RBP16.21■□□□□ 0.19
VPS28-204ENST00000526054 UHRF1BP1Q6BDS2 1440 aa16.19■□□□□ 0.18
VPS28-204ENST00000526054 ZNF777Q9ULD5 760 aaPredicted RBP16.19■□□□□ 0.18
VPS28-204ENST00000526054 INO80Q9ULG1 1556 aaPredicted RBP16.18■□□□□ 0.18
VPS28-204ENST00000526054 ATP7AQ04656 1500 aa16.18■□□□□ 0.18
VPS28-204ENST00000526054 EHBP1L1Q8N3D4 1523 aa16.18■□□□□ 0.18
VPS28-204ENST00000526054 PLEKHH2Q8IVE3 1493 aa16.17■□□□□ 0.18
VPS28-204ENST00000526054 MTUS2Q5JR59 1369 aa16.17■□□□□ 0.18
VPS28-204ENST00000526054 SETD1BQ9UPS6 1966 aaKnown RBP16.17■□□□□ 0.18
VPS28-204ENST00000526054 SUPT6HQ7KZ85 1726 aaKnown RBP16.16■□□□□ 0.18
VPS28-204ENST00000526054 CCNB3Q8WWL7 1395 aa16.16■□□□□ 0.18
VPS28-204ENST00000526054 MROH2AA6NES4 1674 aa16.16■□□□□ 0.18
VPS28-204ENST00000526054 ESF1Q9H501 851 aaKnown RBP16.16■□□□□ 0.18
VPS28-204ENST00000526054 TIAM1Q13009 1591 aa16.16■□□□□ 0.18
VPS28-204ENST00000526054 STRCQ7RTU9 1775 aa16.15■□□□□ 0.18
VPS28-204ENST00000526054 CNTLNQ9NXG0 1405 aa16.15■□□□□ 0.18
VPS28-204ENST00000526054 KIAA1107Q9UPP5 1409 aa16.15■□□□□ 0.18
VPS28-204ENST00000526054 PLXNC1O60486 1568 aa16.14■□□□□ 0.17
VPS28-204ENST00000526054 SPAG9O60271 1321 aaKnown RBP16.14■□□□□ 0.17
VPS28-204ENST00000526054 CFDP1Q9UEE9 299 aaPredicted RBP16.13■□□□□ 0.17
VPS28-204ENST00000526054 HNRNPMP52272 730 aaKnown RBP eCLIP16.12■□□□□ 0.17
VPS28-204ENST00000526054 ADGBQ8N7X0 1667 aa16.11■□□□□ 0.17
VPS28-204ENST00000526054 CLTCQ00610 1675 aaKnown RBP16.1■□□□□ 0.17
VPS28-204ENST00000526054 A2MP01023 1474 aa16.1■□□□□ 0.17
VPS28-204ENST00000526054 CERKQ8TCT0 537 aa16.08■□□□□ 0.16
VPS28-204ENST00000526054 DMRT2Q9Y5R5 561 aa16.07■□□□□ 0.16
VPS28-204ENST00000526054 NPATQ14207 1427 aa16.07■□□□□ 0.16
VPS28-204ENST00000526054 MYO3AQ8NEV4 1616 aa16.06■□□□□ 0.16
VPS28-204ENST00000526054 ZNF142P52746 1687 aaPredicted RBP16.05■□□□□ 0.16
VPS28-204ENST00000526054 MBD5Q9P267 1494 aa16.04■□□□□ 0.16
VPS28-204ENST00000526054 VPS8Q8N3P4 1428 aa16.04■□□□□ 0.16
VPS28-204ENST00000526054 PTPRTO14522 1441 aa16.03■□□□□ 0.16
VPS28-204ENST00000526054 NCOA1Q15788 1441 aa16.03■□□□□ 0.16
VPS28-204ENST00000526054 ZMYM3Q14202 1370 aa16.03■□□□□ 0.16
VPS28-204ENST00000526054 ZNF644Q9H582 1327 aaPredicted RBP16.03■□□□□ 0.16
VPS28-204ENST00000526054 CAMSAP2Q08AD1 1489 aa16.03■□□□□ 0.16
VPS28-204ENST00000526054 NCOA2Q15596 1464 aa16.03■□□□□ 0.16
VPS28-204ENST00000526054 CAMSAP1Q5T5Y3 1602 aa16.02■□□□□ 0.16
VPS28-204ENST00000526054 CCDC141Q6ZP82 1450 aa16.01■□□□□ 0.15
VPS28-204ENST00000526054 RTEL1-TNFRSF6BF6WH68 1400 aa16.01■□□□□ 0.15
VPS28-204ENST00000526054 CEP170BQ9Y4F5 1589 aaPredicted RBP16■□□□□ 0.15
VPS28-204ENST00000526054 GGT6Q6P531 493 aa15.99■□□□□ 0.15
VPS28-204ENST00000526054 PTPRKQ15262 1439 aa15.98■□□□□ 0.15
VPS28-204ENST00000526054 ARHGEF5Q12774 1597 aa15.96■□□□□ 0.15
VPS28-204ENST00000526054 LTBP4Q8N2S1 1624 aa15.96■□□□□ 0.15
VPS28-204ENST00000526054 KDM5DQ9BY66 1539 aa15.95■□□□□ 0.14
VPS28-204ENST00000526054 FAM135AQ9P2D6 1515 aa15.95■□□□□ 0.14
VPS28-204ENST00000526054 DHX29Q7Z478 1369 aaKnown RBP15.95■□□□□ 0.14
VPS28-204ENST00000526054 PLA2R1Q13018 1463 aa15.95■□□□□ 0.14
VPS28-204ENST00000526054 PPP6R1Q9UPN7 881 aa15.94■□□□□ 0.14
VPS28-204ENST00000526054 LRRC9Q6ZRR7 1453 aa15.94■□□□□ 0.14
VPS28-204ENST00000526054 IQSEC2Q5JU85 1478 aa15.91■□□□□ 0.14
VPS28-204ENST00000526054 RSPH4AQ5TD94 716 aa15.91■□□□□ 0.14
VPS28-204ENST00000526054 A2ML1A8K2U0 1454 aa15.91■□□□□ 0.14
VPS28-204ENST00000526054 TCOF1Q13428 1488 aaKnown RBP15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms