RNA–Protein interactions for RNA: ENST00000525508.1

CHD7-203, Transcript of chromodomain helicase DNA binding protein 7, humanhuman

TSL 5 BASIC

Gene CHD7, Length 4,777 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD7-203ENST00000525508 CADPSQ9ULU8 1353 aa10.77□□□□□ -0.69
CHD7-203ENST00000525508 U2AF1L5P0DN76 240 aaPredicted RBP10.77□□□□□ -0.69
CHD7-203ENST00000525508 U2AF1Q01081 240 aaKnown RBP eCLIP10.77□□□□□ -0.69
CHD7-203ENST00000525508 CARMIL2Q6F5E8 1435 aa10.76□□□□□ -0.69
CHD7-203ENST00000525508 CYB5RLQ6IPT4 315 aa10.75□□□□□ -0.69
CHD7-203ENST00000525508 NPHP1O15259 732 aa10.74□□□□□ -0.69
CHD7-203ENST00000525508 BECN1Q14457 450 aa10.74□□□□□ -0.69
CHD7-203ENST00000525508 SPRYD3Q8NCJ5 442 aa10.74□□□□□ -0.69
CHD7-203ENST00000525508 OS9Q13438 667 aaPredicted RBP10.74□□□□□ -0.69
CHD7-203ENST00000525508 ROCK2O75116 1388 aaKnown RBP10.74□□□□□ -0.69
CHD7-203ENST00000525508 TRAK1Q9UPV9 953 aa10.74□□□□□ -0.69
CHD7-203ENST00000525508 TULP1O00294 542 aaPredicted RBP10.73□□□□□ -0.69
CHD7-203ENST00000525508 CCDC146Q8IYE0 955 aa10.73□□□□□ -0.69
CHD7-203ENST00000525508 ZNF330Q9Y3S2 320 aaPredicted RBP10.73□□□□□ -0.69
CHD7-203ENST00000525508 TIMELESSQ9UNS1 1208 aa10.72□□□□□ -0.69
CHD7-203ENST00000525508 WASHC2CQ9Y4E1 1318 aa10.72□□□□□ -0.69
CHD7-203ENST00000525508 CLUAP1Q96AJ1 413 aa10.72□□□□□ -0.69
CHD7-203ENST00000525508 FMN1Q68DA7 1419 aa10.72□□□□□ -0.69
CHD7-203ENST00000525508 SPAG9O60271 1321 aaKnown RBP10.71□□□□□ -0.69
CHD7-203ENST00000525508 SMARCA2P51531 1590 aa10.71□□□□□ -0.7
CHD7-203ENST00000525508 ST20-MTHFSA0A0A6YYL1 179 aa10.71□□□□□ -0.7
CHD7-203ENST00000525508 ANKRD30AQ9BXX3 1397 aa10.7□□□□□ -0.7
CHD7-203ENST00000525508 ATAD2BQ9ULI0 1458 aa10.7□□□□□ -0.7
CHD7-203ENST00000525508 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.69□□□□□ -0.7
CHD7-203ENST00000525508 RTN4Q9NQC3 1192 aaKnown RBP10.69□□□□□ -0.7
CHD7-203ENST00000525508 NAP1L2Q9ULW6 460 aaPredicted RBP10.69□□□□□ -0.7
CHD7-203ENST00000525508 LTV1Q96GA3 475 aaPredicted RBP10.69□□□□□ -0.7
CHD7-203ENST00000525508 DDRGK1Q96HY6 314 aa10.69□□□□□ -0.7
CHD7-203ENST00000525508 HDGFP51858 240 aaKnown RBP10.69□□□□□ -0.7
CHD7-203ENST00000525508 HDGFL2Q7Z4V5 671 aaPredicted RBP10.68□□□□□ -0.7
CHD7-203ENST00000525508 KTN1Q86UP2 1357 aaKnown RBP10.68□□□□□ -0.7
CHD7-203ENST00000525508 ZNF644Q9H582 1327 aaPredicted RBP10.68□□□□□ -0.7
CHD7-203ENST00000525508 KCNJ4P48050 445 aa10.68□□□□□ -0.7
CHD7-203ENST00000525508 PLCB2Q00722 1185 aa10.68□□□□□ -0.7
CHD7-203ENST00000525508 RRP7AQ9Y3A4 280 aaKnown RBP10.68□□□□□ -0.7
CHD7-203ENST00000525508 CCER2I3L3R5 266 aa10.68□□□□□ -0.7
CHD7-203ENST00000525508 RTF1Q92541 710 aaKnown RBP10.67□□□□□ -0.7
CHD7-203ENST00000525508 FGD1P98174 961 aa10.67□□□□□ -0.7
CHD7-203ENST00000525508 CSB-PGBD3P0DP91 1061 aa10.67□□□□□ -0.7
CHD7-203ENST00000525508 GLIPR1L2Q4G1C9 344 aa10.66□□□□□ -0.7
CHD7-203ENST00000525508 RCAN3Q9UKA8 241 aa10.66□□□□□ -0.7
CHD7-203ENST00000525508 ELL2O00472 640 aaPredicted RBP10.66□□□□□ -0.7
CHD7-203ENST00000525508 GOLGA6L22H0YM25 854 aa10.65□□□□□ -0.7
CHD7-203ENST00000525508 CASC1Q6TDU7 716 aa10.65□□□□□ -0.7
CHD7-203ENST00000525508 TOP2AP11388 1531 aaKnown RBP10.65□□□□□ -0.7
CHD7-203ENST00000525508 BCL2L13Q9BXK5 485 aa10.64□□□□□ -0.71
CHD7-203ENST00000525508 TRIM44Q96DX7 344 aaPredicted RBP10.64□□□□□ -0.71
CHD7-203ENST00000525508 NGDNQ8NEJ9 315 aaKnown RBP10.64□□□□□ -0.71
CHD7-203ENST00000525508 RBM19Q9Y4C8 960 aaKnown RBP10.64□□□□□ -0.71
CHD7-203ENST00000525508 ITPRIPQ8IWB1 547 aa10.63□□□□□ -0.71
CHD7-203ENST00000525508 HSP90AB1P08238 724 aaKnown RBP10.63□□□□□ -0.71
CHD7-203ENST00000525508 PANK3Q9H999 370 aa10.62□□□□□ -0.71
CHD7-203ENST00000525508 NOP58Q9Y2X3 529 aaKnown RBP10.62□□□□□ -0.71
CHD7-203ENST00000525508 PNNQ9H307 717 aaKnown RBP10.62□□□□□ -0.71
CHD7-203ENST00000525508 TSHZ2Q9NRE2 1034 aa10.62□□□□□ -0.71
CHD7-203ENST00000525508 FANCD2Q9BXW9 1451 aa10.62□□□□□ -0.71
CHD7-203ENST00000525508 RAD54L2Q9Y4B4 1467 aa10.61□□□□□ -0.71
CHD7-203ENST00000525508 PLIN1O60240 522 aa10.61□□□□□ -0.71
CHD7-203ENST00000525508 GOLGA2Q08379 1002 aa10.61□□□□□ -0.71
CHD7-203ENST00000525508 SLC4A10Q6U841 1118 aa10.61□□□□□ -0.71
CHD7-203ENST00000525508 DHX57Q6P158 1386 aaKnown RBP10.61□□□□□ -0.71
CHD7-203ENST00000525508 PTMAP06454 111 aaKnown RBP10.61□□□□□ -0.71
CHD7-203ENST00000525508 SLKQ9H2G2 1235 aaPredicted RBP10.6□□□□□ -0.71
CHD7-203ENST00000525508 PTPRGP23470 1445 aa10.6□□□□□ -0.71
CHD7-203ENST00000525508 MS4A1P11836 297 aa10.6□□□□□ -0.71
CHD7-203ENST00000525508 SMC4Q9NTJ3 1288 aa10.6□□□□□ -0.71
CHD7-203ENST00000525508 CCDC9Q9Y3X0 531 aaKnown RBP10.6□□□□□ -0.71
CHD7-203ENST00000525508 MINK1Q8N4C8 1332 aaPredicted RBP10.59□□□□□ -0.71
CHD7-203ENST00000525508 RALBP1Q15311 655 aa10.59□□□□□ -0.71
CHD7-203ENST00000525508 AMER1Q5JTC6 1135 aaPredicted RBP10.59□□□□□ -0.71
CHD7-203ENST00000525508 ZRSR1Q15695 479 aaKnown RBP10.59□□□□□ -0.71
CHD7-203ENST00000525508 NLRP13Q86W25 1043 aa10.59□□□□□ -0.71
CHD7-203ENST00000525508 IGF1RP08069 1367 aa10.58□□□□□ -0.72
CHD7-203ENST00000525508 TCERG1O14776 1098 aaKnown RBP10.58□□□□□ -0.72
CHD7-203ENST00000525508 AMPHP49418 695 aa10.58□□□□□ -0.72
CHD7-203ENST00000525508 TERF2IPQ9NYB0 399 aa10.58□□□□□ -0.72
CHD7-203ENST00000525508 CCDC18Q5T9S5 1454 aa10.57□□□□□ -0.72
CHD7-203ENST00000525508 EID1Q9Y6B2 187 aa10.57□□□□□ -0.72
CHD7-203ENST00000525508 DNTTIP2Q5QJE6 756 aaKnown RBP10.56□□□□□ -0.72
CHD7-203ENST00000525508 CHMP3Q9Y3E7 222 aa10.56□□□□□ -0.72
CHD7-203ENST00000525508 CHMP4BQ9H444 224 aaKnown RBP10.56□□□□□ -0.72
CHD7-203ENST00000525508 IPO8O15397 1037 aaKnown RBP10.55□□□□□ -0.72
CHD7-203ENST00000525508 RSPH4AQ5TD94 716 aa10.55□□□□□ -0.72
CHD7-203ENST00000525508 AQRO60306 1485 aaKnown RBP eCLIP10.55□□□□□ -0.72
CHD7-203ENST00000525508 ISY1Q9ULR0 285 aaKnown RBP10.55□□□□□ -0.72
CHD7-203ENST00000525508 SMARCA4P51532 1647 aa10.55□□□□□ -0.72
CHD7-203ENST00000525508 CCDC144AA2RUR9 1427 aa10.55□□□□□ -0.72
CHD7-203ENST00000525508 CDK11BP21127 795 aaKnown RBP10.54□□□□□ -0.72
CHD7-203ENST00000525508 GZF1Q9H116 711 aaPredicted RBP10.54□□□□□ -0.72
CHD7-203ENST00000525508 PRKRIP1Q9H875 184 aaPredicted RBP10.54□□□□□ -0.72
CHD7-203ENST00000525508 DEKP35659 375 aaKnown RBP10.54□□□□□ -0.72
CHD7-203ENST00000525508 OSCARQ8IYS5 282 aa10.54□□□□□ -0.72
CHD7-203ENST00000525508 AFAP1Q8N556 730 aa10.54□□□□□ -0.72
CHD7-203ENST00000525508 HSCBQ8IWL3 235 aa10.54□□□□□ -0.72
CHD7-203ENST00000525508 APAF1O14727 1248 aa10.53□□□□□ -0.72
CHD7-203ENST00000525508 MFAP1P55081 439 aaKnown RBP10.53□□□□□ -0.72
CHD7-203ENST00000525508 NOL8Q76FK4 1167 aaKnown RBP10.53□□□□□ -0.72
CHD7-203ENST00000525508 STK31Q9BXU1 1019 aa10.53□□□□□ -0.72
CHD7-203ENST00000525508 FGD5Q6ZNL6 1462 aa10.53□□□□□ -0.72
CHD7-203ENST00000525508 TMEM132EQ6IEE7 984 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms