RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 PDE4AP27815 886 aa10.9□□□□□ -0.66
CD44-215ENST00000525241 LARP6Q9BRS8 491 aaKnown RBP10.88□□□□□ -0.67
CD44-215ENST00000525241 TMEM92Q6UXU6 159 aa10.87□□□□□ -0.67
CD44-215ENST00000525241 GPHNQ9NQX3 736 aaPredicted RBP10.87□□□□□ -0.67
CD44-215ENST00000525241 MFSD10Q14728 455 aa10.86□□□□□ -0.67
CD44-215ENST00000525241 KIF3CO14782 793 aa10.85□□□□□ -0.67
CD44-215ENST00000525241 WDR70Q9NW82 654 aa10.85□□□□□ -0.67
CD44-215ENST00000525241 C2orf72A6NCS6 295 aa10.84□□□□□ -0.67
CD44-215ENST00000525241 C3orf67Q6ZVT6 689 aa10.84□□□□□ -0.67
CD44-215ENST00000525241 TMC2Q8TDI7 906 aa10.83□□□□□ -0.68
CD44-215ENST00000525241 DDX27Q96GQ7 796 aaKnown RBP10.82□□□□□ -0.68
CD44-215ENST00000525241 FOXK1P85037 733 aa10.8□□□□□ -0.68
CD44-215ENST00000525241 DSG2Q14126 1118 aa10.8□□□□□ -0.68
CD44-215ENST00000525241 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.8□□□□□ -0.68
CD44-215ENST00000525241 PPP1R15BQ5SWA1 713 aa10.79□□□□□ -0.68
CD44-215ENST00000525241 E2F4Q16254 413 aa10.76□□□□□ -0.69
CD44-215ENST00000525241 CAMK2BQ13554 666 aa10.75□□□□□ -0.69
CD44-215ENST00000525241 MAMSTRQ6ZN01 415 aa10.75□□□□□ -0.69
CD44-215ENST00000525241 PLPP6Q8IY26 295 aa10.75□□□□□ -0.69
CD44-215ENST00000525241 KCNV2Q8TDN2 545 aa10.75□□□□□ -0.69
CD44-215ENST00000525241 SCUBE2Q9NQ36 999 aa10.74□□□□□ -0.69
CD44-215ENST00000525241 P3H3Q8IVL6 736 aa10.73□□□□□ -0.69
CD44-215ENST00000525241 LHX8Q68G74 356 aa10.72□□□□□ -0.69
CD44-215ENST00000525241 SLAIN1Q8ND83 568 aa10.7□□□□□ -0.7
CD44-215ENST00000525241 OTUD5Q96G74 571 aa10.7□□□□□ -0.7
CD44-215ENST00000525241 EMILIN3Q9NT22 766 aa10.69□□□□□ -0.7
CD44-215ENST00000525241 ARHGEF1Q92888 912 aaKnown RBP10.68□□□□□ -0.7
CD44-215ENST00000525241 ARIH1Q9Y4X5 557 aaPredicted RBP10.67□□□□□ -0.7
CD44-215ENST00000525241 BCANQ96GW7 911 aa10.64□□□□□ -0.71
CD44-215ENST00000525241 SLC34A2O95436 690 aa10.62□□□□□ -0.71
CD44-215ENST00000525241 OXER1Q8TDS5 423 aa10.62□□□□□ -0.71
CD44-215ENST00000525241 DPYSL4O14531 572 aa10.61□□□□□ -0.71
CD44-215ENST00000525241 HOXB3P14651 431 aaPredicted RBP10.6□□□□□ -0.71
CD44-215ENST00000525241 NBR1Q14596 966 aa10.6□□□□□ -0.71
CD44-215ENST00000525241 PTCD2Q8WV60 388 aaKnown RBP10.6□□□□□ -0.71
CD44-215ENST00000525241 UPF1Q92900 1129 aaKnown RBP eCLIP10.6□□□□□ -0.71
CD44-215ENST00000525241 MAP3K9P80192 1104 aa10.56□□□□□ -0.72
CD44-215ENST00000525241 PDIA6Q15084 440 aa10.55□□□□□ -0.72
CD44-215ENST00000525241 DOK7Q18PE1 504 aa10.55□□□□□ -0.72
CD44-215ENST00000525241 SEMA3EO15041 775 aa10.54□□□□□ -0.72
CD44-215ENST00000525241 PCDHGA4Q9Y5G9 962 aa10.54□□□□□ -0.72
CD44-215ENST00000525241 SPDYE16A6NNV3 312 aaPredicted RBP10.53□□□□□ -0.72
CD44-215ENST00000525241 TBC1D12O60347 775 aa10.52□□□□□ -0.73
CD44-215ENST00000525241 SNPHO15079 494 aa10.51□□□□□ -0.73
CD44-215ENST00000525241 TESPA1A2RU30 521 aaPredicted RBP10.5□□□□□ -0.73
CD44-215ENST00000525241 KDM4FA0A1W2PPD8 638 aa10.49□□□□□ -0.73
CD44-215ENST00000525241 EVI5O60447 810 aa10.49□□□□□ -0.73
CD44-215ENST00000525241 GPR153Q6NV75 609 aa10.49□□□□□ -0.73
CD44-215ENST00000525241 ZSWIM6Q9HCJ5 1215 aa10.49□□□□□ -0.73
CD44-215ENST00000525241 RIMBP2O15034 1052 aa10.48□□□□□ -0.73
CD44-215ENST00000525241 ARSIQ5FYB1 569 aa10.48□□□□□ -0.73
CD44-215ENST00000525241 ANO8Q9HCE9 1232 aaPredicted RBP10.48□□□□□ -0.73
CD44-215ENST00000525241 ZNF710Q8N1W2 664 aa10.47□□□□□ -0.73
CD44-215ENST00000525241 KHSRPQ92945 711 aaKnown RBP eCLIP10.47□□□□□ -0.73
CD44-215ENST00000525241 MLLT3P42568 568 aaPredicted RBP10.46□□□□□ -0.73
CD44-215ENST00000525241 PTGER2P43116 358 aa10.45□□□□□ -0.74
CD44-215ENST00000525241 NUDT7P0C024 238 aa10.43□□□□□ -0.74
CD44-215ENST00000525241 HOXB1P14653 301 aaPredicted RBP10.42□□□□□ -0.74
CD44-215ENST00000525241 ZNF316A6NFI3 1004 aaPredicted RBP10.41□□□□□ -0.74
CD44-215ENST00000525241 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.41□□□□□ -0.74
CD44-215ENST00000525241 DDX12PQ92771 950 aa10.4□□□□□ -0.74
CD44-215ENST00000525241 GRXCR2A6NFK2 248 aa10.39□□□□□ -0.75
CD44-215ENST00000525241 SMYD5Q6GMV2 418 aa10.39□□□□□ -0.75
CD44-215ENST00000525241 ST18O60284 1047 aa10.38□□□□□ -0.75
CD44-215ENST00000525241 TULP1O00294 542 aaPredicted RBP10.36□□□□□ -0.75
CD44-215ENST00000525241 OSBPP22059 807 aa10.36□□□□□ -0.75
CD44-215ENST00000525241 LMOD2Q6P5Q4 547 aa10.36□□□□□ -0.75
CD44-215ENST00000525241 PHF14O94880 888 aa10.35□□□□□ -0.75
CD44-215ENST00000525241 LHX6Q9UPM6 363 aa10.35□□□□□ -0.75
CD44-215ENST00000525241 PRIM1P49642 420 aaKnown RBP10.34□□□□□ -0.75
CD44-215ENST00000525241 FOSBP53539 338 aa10.34□□□□□ -0.75
CD44-215ENST00000525241 FAM163AQ96GL9 167 aaPredicted RBP10.34□□□□□ -0.75
CD44-215ENST00000525241 JPH4Q96JJ6 628 aa10.34□□□□□ -0.75
CD44-215ENST00000525241 PCDHGA10Q9Y5H3 936 aa10.34□□□□□ -0.75
CD44-215ENST00000525241 RBM26Q5T8P6 1007 aaKnown RBP10.33□□□□□ -0.76
CD44-215ENST00000525241 LCE2DQ5TA82 110 aaPredicted RBP10.33□□□□□ -0.76
CD44-215ENST00000525241 EPAS1Q99814 870 aa10.32□□□□□ -0.76
CD44-215ENST00000525241 TYW1BQ6NUM6 668 aa10.3□□□□□ -0.76
CD44-215ENST00000525241 ZNF454Q8N9F8 522 aa10.3□□□□□ -0.76
CD44-215ENST00000525241 MARVELD3Q96A59 401 aa10.29□□□□□ -0.76
CD44-215ENST00000525241 FBXW7Q969H0 707 aa10.28□□□□□ -0.76
CD44-215ENST00000525241 PSDA5PKW4 1024 aaPredicted RBP10.27□□□□□ -0.77
CD44-215ENST00000525241 EN1Q05925 392 aaPredicted RBP10.27□□□□□ -0.77
CD44-215ENST00000525241 TPRNQ4KMQ1 711 aa10.27□□□□□ -0.77
CD44-215ENST00000525241 ZDHHC16Q969W1 377 aa10.27□□□□□ -0.77
CD44-215ENST00000525241 EMP3P54852 163 aa10.26□□□□□ -0.77
CD44-215ENST00000525241 RBM33Q96EV2 1170 aaKnown RBP10.26□□□□□ -0.77
CD44-215ENST00000525241 ADAM33Q9BZ11 813 aa10.26□□□□□ -0.77
CD44-215ENST00000525241 PPP4R3BQ5MIZ7 849 aa10.25□□□□□ -0.77
CD44-215ENST00000525241 ERBB3P21860 1342 aa10.25□□□□□ -0.77
CD44-215ENST00000525241 PRKCSHP14314 528 aaPredicted RBP10.24□□□□□ -0.77
CD44-215ENST00000525241 GPIHBP1Q8IV16 184 aa10.24□□□□□ -0.77
CD44-215ENST00000525241 ZC3H15Q8WU90 426 aaKnown RBP10.24□□□□□ -0.77
CD44-215ENST00000525241 NUTM2FA1L443 756 aa10.23□□□□□ -0.77
CD44-215ENST00000525241 MAP3K7O43318 606 aa10.23□□□□□ -0.77
CD44-215ENST00000525241 GPR37O15354 613 aa10.22□□□□□ -0.77
CD44-215ENST00000525241 TSR1Q2NL82 804 aaKnown RBP10.22□□□□□ -0.77
CD44-215ENST00000525241 VARS2Q5ST30 1063 aaKnown RBP10.22□□□□□ -0.77
CD44-215ENST00000525241 POTEB3A0JP26 581 aa10.21□□□□□ -0.77
CD44-215ENST00000525241 FAM205CA6NFA0 338 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms