RNA–Protein interactions for RNA: ENST00000523359.1

SKP1-211, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 5

Gene SKP1, Length 748 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-211ENST00000523359 HS6ST3Q8IZP7 471 aa12.48□□□□□ -0.41
SKP1-211ENST00000523359 ZNF710Q8N1W2 664 aa12.48□□□□□ -0.41
SKP1-211ENST00000523359 CHGAP10645 457 aaKnown RBP12.47□□□□□ -0.41
SKP1-211ENST00000523359 DOK7Q18PE1 504 aa12.46□□□□□ -0.41
SKP1-211ENST00000523359 PPP1R37O75864 691 aa12.43□□□□□ -0.42
SKP1-211ENST00000523359 FAM205CA6NFA0 338 aa12.42□□□□□ -0.42
SKP1-211ENST00000523359 RIMBP2O15034 1052 aa12.4□□□□□ -0.42
SKP1-211ENST00000523359 HOXB1P14653 301 aaPredicted RBP12.4□□□□□ -0.42
SKP1-211ENST00000523359 POTEB3A0JP26 581 aa12.39□□□□□ -0.43
SKP1-211ENST00000523359 POTEBQ6S5H4 581 aa12.39□□□□□ -0.43
SKP1-211ENST00000523359 HS3ST6Q96QI5 342 aa12.39□□□□□ -0.43
SKP1-211ENST00000523359 C2orf72A6NCS6 295 aa12.37□□□□□ -0.43
SKP1-211ENST00000523359 PLCB2Q00722 1185 aa12.37□□□□□ -0.43
SKP1-211ENST00000523359 KIF3CO14782 793 aa12.34□□□□□ -0.43
SKP1-211ENST00000523359 NKX1-1Q15270 411 aaPredicted RBP12.34□□□□□ -0.43
SKP1-211ENST00000523359 BBXQ8WY36 941 aaPredicted RBP12.34□□□□□ -0.43
SKP1-211ENST00000523359 ZSWIM6Q9HCJ5 1215 aa12.32□□□□□ -0.44
SKP1-211ENST00000523359 GPR153Q6NV75 609 aa12.31□□□□□ -0.44
SKP1-211ENST00000523359 TMC2Q8TDI7 906 aa12.31□□□□□ -0.44
SKP1-211ENST00000523359 ERBB3P21860 1342 aa12.31□□□□□ -0.44
SKP1-211ENST00000523359 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.3□□□□□ -0.44
SKP1-211ENST00000523359 ARSIQ5FYB1 569 aa12.29□□□□□ -0.44
SKP1-211ENST00000523359 DNAJC5Q9H3Z4 198 aa12.29□□□□□ -0.44
SKP1-211ENST00000523359 VARS2Q5ST30 1063 aaKnown RBP12.26□□□□□ -0.45
SKP1-211ENST00000523359 KHSRPQ92945 711 aaKnown RBP eCLIP12.26□□□□□ -0.451e-7■■■□□ 14.8
SKP1-211ENST00000523359 KRTAP3-3Q9BYR6 98 aa12.26□□□□□ -0.45
SKP1-211ENST00000523359 KRTAP3-2Q9BYR7 98 aa12.26□□□□□ -0.45
SKP1-211ENST00000523359 PAXIP1Q6ZW49 1069 aaPredicted RBP12.24□□□□□ -0.45
SKP1-211ENST00000523359 HAP1P54257 671 aaPredicted RBP12.23□□□□□ -0.45
SKP1-211ENST00000523359 CFAP44Q96MT7 982 aa12.23□□□□□ -0.45
SKP1-211ENST00000523359 SPNS2Q8IVW8 549 aa12.22□□□□□ -0.45
SKP1-211ENST00000523359 RYDENQ9NUL5 291 aaKnown RBP12.21□□□□□ -0.45
SKP1-211ENST00000523359 NUDT7P0C024 238 aa12.18□□□□□ -0.46
SKP1-211ENST00000523359 SLC34A2O95436 690 aa12.17□□□□□ -0.46
SKP1-211ENST00000523359 SPRYD3Q8NCJ5 442 aa12.17□□□□□ -0.46
SKP1-211ENST00000523359 GPHNQ9NQX3 736 aaPredicted RBP12.17□□□□□ -0.46
SKP1-211ENST00000523359 PCDHGA4Q9Y5G9 962 aa12.17□□□□□ -0.46
SKP1-211ENST00000523359 MMRN1Q13201 1228 aa12.16□□□□□ -0.46
SKP1-211ENST00000523359 ZNF316A6NFI3 1004 aaPredicted RBP12.15□□□□□ -0.46
SKP1-211ENST00000523359 GTPBP6O43824 516 aaPredicted RBP12.15□□□□□ -0.46
SKP1-211ENST00000523359 FOXK1P85037 733 aa12.15□□□□□ -0.46
SKP1-211ENST00000523359 PLPP6Q8IY26 295 aa12.15□□□□□ -0.46
SKP1-211ENST00000523359 DSG2Q14126 1118 aa12.14□□□□□ -0.47
SKP1-211ENST00000523359 ZNF687Q8N1G0 1237 aa12.13□□□□□ -0.47
SKP1-211ENST00000523359 LHX6Q9UPM6 363 aa12.09□□□□□ -0.47
SKP1-211ENST00000523359 PTCD2Q8WV60 388 aaKnown RBP12.07□□□□□ -0.48
SKP1-211ENST00000523359 CRISPLD2Q9H0B8 497 aa12.07□□□□□ -0.48
SKP1-211ENST00000523359 NCKAP5LQ9HCH0 1330 aa12.05□□□□□ -0.48
SKP1-211ENST00000523359 PPP1R15BQ5SWA1 713 aa12.02□□□□□ -0.49
SKP1-211ENST00000523359 PDE4AP27815 886 aa12.01□□□□□ -0.49
SKP1-211ENST00000523359 UPF1Q92900 1129 aaKnown RBP eCLIP12.01□□□□□ -0.49
SKP1-211ENST00000523359 TSHZ2Q9NRE2 1034 aa12.01□□□□□ -0.49
SKP1-211ENST00000523359 KDM4FA0A1W2PPD8 638 aa12□□□□□ -0.49
SKP1-211ENST00000523359 TBC1D12O60347 775 aa11.99□□□□□ -0.49
SKP1-211ENST00000523359 VSIG10Q8N0Z9 540 aa11.99□□□□□ -0.49
SKP1-211ENST00000523359 ANKRD13DQ6ZTN6 518 aa11.98□□□□□ -0.49
SKP1-211ENST00000523359 LARP6Q9BRS8 491 aaKnown RBP11.98□□□□□ -0.49
SKP1-211ENST00000523359 POTEEQ6S8J3 1075 aa11.97□□□□□ -0.49
SKP1-211ENST00000523359 AXIN2Q9Y2T1 843 aa11.97□□□□□ -0.49
SKP1-211ENST00000523359 OXER1Q8TDS5 423 aa11.96□□□□□ -0.49
SKP1-211ENST00000523359 LSM11P83369 360 aaKnown RBP eCLIP11.95□□□□□ -0.5
SKP1-211ENST00000523359 PBX2P40425 430 aa11.94□□□□□ -0.5
SKP1-211ENST00000523359 CADPS2Q86UW7 1296 aa11.94□□□□□ -0.5
SKP1-211ENST00000523359 DDX27Q96GQ7 796 aaKnown RBP11.94□□□□□ -0.5
SKP1-211ENST00000523359 KDM2AQ9Y2K7 1162 aa11.94□□□□□ -0.5
SKP1-211ENST00000523359 PSDA5PKW4 1024 aaPredicted RBP11.93□□□□□ -0.5
SKP1-211ENST00000523359 RNF166Q96A37 237 aaPredicted RBP11.91□□□□□ -0.5
SKP1-211ENST00000523359 MYT1LQ9UL68 1186 aa11.91□□□□□ -0.5
SKP1-211ENST00000523359 MFSD10Q14728 455 aa11.9□□□□□ -0.5
SKP1-211ENST00000523359 PPP4R3BQ5MIZ7 849 aa11.88□□□□□ -0.51
SKP1-211ENST00000523359 ARHGAP33O14559 1287 aa11.87□□□□□ -0.51
SKP1-211ENST00000523359 PTGER2P43116 358 aa11.85□□□□□ -0.51
SKP1-211ENST00000523359 PSEN2P49810 448 aa11.85□□□□□ -0.51
SKP1-211ENST00000523359 ZNF454Q8N9F8 522 aa11.84□□□□□ -0.51
SKP1-211ENST00000523359 EMILIN3Q9NT22 766 aa11.84□□□□□ -0.51
SKP1-211ENST00000523359 EVI5O60447 810 aa11.83□□□□□ -0.52
SKP1-211ENST00000523359 DMRTA1Q5VZB9 504 aa11.82□□□□□ -0.52
SKP1-211ENST00000523359 MAP3K9P80192 1104 aa11.81□□□□□ -0.52
SKP1-211ENST00000523359 ADGRD1Q6QNK2 874 aa11.8□□□□□ -0.52
SKP1-211ENST00000523359 KCNK17Q96T54 332 aa11.8□□□□□ -0.52
SKP1-211ENST00000523359 FOSBP53539 338 aa11.78□□□□□ -0.52
SKP1-211ENST00000523359 ANO8Q9HCE9 1232 aaPredicted RBP11.78□□□□□ -0.52
SKP1-211ENST00000523359 KCNH8Q96L42 1107 aa11.75□□□□□ -0.53
SKP1-211ENST00000523359 TK2O00142 265 aa11.74□□□□□ -0.53
SKP1-211ENST00000523359 JPH4Q96JJ6 628 aa11.74□□□□□ -0.53
SKP1-211ENST00000523359 BCL2L12Q9HB09 334 aa11.74□□□□□ -0.53
SKP1-211ENST00000523359 CAMK2BQ13554 666 aa11.72□□□□□ -0.53
SKP1-211ENST00000523359 HRO43593 1189 aa11.71□□□□□ -0.53
SKP1-211ENST00000523359 ZDHHC16Q969W1 377 aa11.71□□□□□ -0.53
SKP1-211ENST00000523359 DPYSL4O14531 572 aa11.7□□□□□ -0.54
SKP1-211ENST00000523359 ADAM33Q9BZ11 813 aa11.7□□□□□ -0.54
SKP1-211ENST00000523359 PTPREP23469 700 aa11.69□□□□□ -0.54
SKP1-211ENST00000523359 BCANQ96GW7 911 aa11.68□□□□□ -0.54
SKP1-211ENST00000523359 PCDHGA10Q9Y5H3 936 aa11.68□□□□□ -0.54
SKP1-211ENST00000523359 VPS9D1Q9Y2B5 631 aa11.67□□□□□ -0.54
SKP1-211ENST00000523359 STAC3Q96MF2 364 aa11.65□□□□□ -0.54
SKP1-211ENST00000523359 ZBED2Q9BTP6 218 aa11.62□□□□□ -0.55
SKP1-211ENST00000523359 PHF14O94880 888 aa11.61□□□□□ -0.55
SKP1-211ENST00000523359 TYW1BQ6NUM6 668 aa11.61□□□□□ -0.55
SKP1-211ENST00000523359 KCTD12Q96CX2 325 aaKnown RBP11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms