RNA–Protein interactions for RNA: ENST00000522557.1

HMGB1P1-201, Transcript of high mobility group box 1 pseudogene 1, humanhuman

BASIC

Gene HMGB1P1, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P1-201ENST00000522557 PAXIP1Q6ZW49 1069 aaPredicted RBP11.78□□□□□ -0.52
HMGB1P1-201ENST00000522557 LCE2DQ5TA82 110 aaPredicted RBP11.77□□□□□ -0.53
HMGB1P1-201ENST00000522557 CFAP44Q96MT7 982 aa11.77□□□□□ -0.53
HMGB1P1-201ENST00000522557 KIF3CO14782 793 aa11.76□□□□□ -0.53
HMGB1P1-201ENST00000522557 SNPHO15079 494 aa11.75□□□□□ -0.53
HMGB1P1-201ENST00000522557 HOXB3P14651 431 aaPredicted RBP11.73□□□□□ -0.53
HMGB1P1-201ENST00000522557 TMC2Q8TDI7 906 aa11.73□□□□□ -0.53
HMGB1P1-201ENST00000522557 ST18O60284 1047 aa11.72□□□□□ -0.53
HMGB1P1-201ENST00000522557 CADPS2Q86UW7 1296 aa11.7□□□□□ -0.54
HMGB1P1-201ENST00000522557 GPHNQ9NQX3 736 aaPredicted RBP11.69□□□□□ -0.54
HMGB1P1-201ENST00000522557 NCKAP5LQ9HCH0 1330 aa11.67□□□□□ -0.54
HMGB1P1-201ENST00000522557 CRISPLD2Q9H0B8 497 aa11.67□□□□□ -0.54
HMGB1P1-201ENST00000522557 DSG2Q14126 1118 aa11.65□□□□□ -0.54
HMGB1P1-201ENST00000522557 DOK7Q18PE1 504 aa11.65□□□□□ -0.54
HMGB1P1-201ENST00000522557 PDE4AP27815 886 aa11.64□□□□□ -0.55
HMGB1P1-201ENST00000522557 ZNF710Q8N1W2 664 aa11.64□□□□□ -0.55
HMGB1P1-201ENST00000522557 FOXK1P85037 733 aa11.63□□□□□ -0.55
HMGB1P1-201ENST00000522557 PLPP6Q8IY26 295 aa11.63□□□□□ -0.55
HMGB1P1-201ENST00000522557 LARP6Q9BRS8 491 aaKnown RBP11.62□□□□□ -0.55
HMGB1P1-201ENST00000522557 POTEMA6NI47 508 aa11.61□□□□□ -0.55
HMGB1P1-201ENST00000522557 POTEGQ6S5H5 508 aa11.61□□□□□ -0.55
HMGB1P1-201ENST00000522557 MARVELD3Q96A59 401 aa11.61□□□□□ -0.55
HMGB1P1-201ENST00000522557 RIMBP2O15034 1052 aa11.58□□□□□ -0.56
HMGB1P1-201ENST00000522557 HOXB1P14653 301 aaPredicted RBP11.57□□□□□ -0.56
HMGB1P1-201ENST00000522557 ARSIQ5FYB1 569 aa11.57□□□□□ -0.56
HMGB1P1-201ENST00000522557 PPP1R15BQ5SWA1 713 aa11.57□□□□□ -0.56
HMGB1P1-201ENST00000522557 GPR153Q6NV75 609 aa11.57□□□□□ -0.56
HMGB1P1-201ENST00000522557 TSHZ2Q9NRE2 1034 aa11.57□□□□□ -0.56
HMGB1P1-201ENST00000522557 KHSRPQ92945 711 aaKnown RBP eCLIP11.56□□□□□ -0.56
HMGB1P1-201ENST00000522557 SLC34A2O95436 690 aa11.55□□□□□ -0.56
HMGB1P1-201ENST00000522557 DDX27Q96GQ7 796 aaKnown RBP11.55□□□□□ -0.56
HMGB1P1-201ENST00000522557 ZSWIM6Q9HCJ5 1215 aa11.55□□□□□ -0.56
HMGB1P1-201ENST00000522557 PLCB2Q00722 1185 aa11.54□□□□□ -0.56
HMGB1P1-201ENST00000522557 MFSD10Q14728 455 aa11.54□□□□□ -0.56
HMGB1P1-201ENST00000522557 EMP3P54852 163 aa11.52□□□□□ -0.57
HMGB1P1-201ENST00000522557 PCDHGA4Q9Y5G9 962 aa11.52□□□□□ -0.57
HMGB1P1-201ENST00000522557 PTCD2Q8WV60 388 aaKnown RBP11.5□□□□□ -0.57
HMGB1P1-201ENST00000522557 FAM205CA6NFA0 338 aa11.49□□□□□ -0.57
HMGB1P1-201ENST00000522557 POTEB3A0JP26 581 aa11.48□□□□□ -0.57
HMGB1P1-201ENST00000522557 POTEBQ6S5H4 581 aa11.48□□□□□ -0.57
HMGB1P1-201ENST00000522557 UPF1Q92900 1129 aaKnown RBP eCLIP11.48□□□□□ -0.57
HMGB1P1-201ENST00000522557 NUDT7P0C024 238 aa11.47□□□□□ -0.57
HMGB1P1-201ENST00000522557 OXER1Q8TDS5 423 aa11.46□□□□□ -0.57
HMGB1P1-201ENST00000522557 EMILIN3Q9NT22 766 aa11.45□□□□□ -0.58
HMGB1P1-201ENST00000522557 ERBB3P21860 1342 aa11.44□□□□□ -0.58
HMGB1P1-201ENST00000522557 HS3ST6Q96QI5 342 aa11.44□□□□□ -0.58
HMGB1P1-201ENST00000522557 KDM4FA0A1W2PPD8 638 aa11.42□□□□□ -0.58
HMGB1P1-201ENST00000522557 TBC1D12O60347 775 aa11.42□□□□□ -0.58
HMGB1P1-201ENST00000522557 CDAN1Q8IWY9 1227 aa11.41□□□□□ -0.58
HMGB1P1-201ENST00000522557 ZNF316A6NFI3 1004 aaPredicted RBP11.4□□□□□ -0.58
HMGB1P1-201ENST00000522557 CAMK2BQ13554 666 aa11.4□□□□□ -0.58
HMGB1P1-201ENST00000522557 VARS2Q5ST30 1063 aaKnown RBP11.4□□□□□ -0.58
HMGB1P1-201ENST00000522557 WDR70Q9NW82 654 aa11.4□□□□□ -0.58
HMGB1P1-201ENST00000522557 LHX6Q9UPM6 363 aa11.4□□□□□ -0.58
HMGB1P1-201ENST00000522557 HAP1P54257 671 aaPredicted RBP11.38□□□□□ -0.59
HMGB1P1-201ENST00000522557 MAP3K9P80192 1104 aa11.37□□□□□ -0.59
HMGB1P1-201ENST00000522557 E2F4Q16254 413 aa11.34□□□□□ -0.59
HMGB1P1-201ENST00000522557 PCDH10Q9P2E7 1040 aa11.34□□□□□ -0.59
HMGB1P1-201ENST00000522557 DPYSL4O14531 572 aa11.33□□□□□ -0.6
HMGB1P1-201ENST00000522557 EVI5O60447 810 aa11.33□□□□□ -0.6
HMGB1P1-201ENST00000522557 ANO8Q9HCE9 1232 aaPredicted RBP11.31□□□□□ -0.6
HMGB1P1-201ENST00000522557 ZNF687Q8N1G0 1237 aa11.3□□□□□ -0.6
HMGB1P1-201ENST00000522557 KRTAP3-3Q9BYR6 98 aa11.28□□□□□ -0.6
HMGB1P1-201ENST00000522557 KRTAP3-2Q9BYR7 98 aa11.28□□□□□ -0.6
HMGB1P1-201ENST00000522557 KDM2AQ9Y2K7 1162 aa11.26□□□□□ -0.61
HMGB1P1-201ENST00000522557 POTEEQ6S8J3 1075 aa11.24□□□□□ -0.61
HMGB1P1-201ENST00000522557 ZNF454Q8N9F8 522 aa11.24□□□□□ -0.61
HMGB1P1-201ENST00000522557 PSDA5PKW4 1024 aaPredicted RBP11.23□□□□□ -0.61
HMGB1P1-201ENST00000522557 FOSBP53539 338 aa11.22□□□□□ -0.61
HMGB1P1-201ENST00000522557 PPP4R3BQ5MIZ7 849 aa11.22□□□□□ -0.61
HMGB1P1-201ENST00000522557 KCNV2Q8TDN2 545 aa11.22□□□□□ -0.61
HMGB1P1-201ENST00000522557 AXIN2Q9Y2T1 843 aa11.22□□□□□ -0.61
HMGB1P1-201ENST00000522557 ARIH1Q9Y4X5 557 aaPredicted RBP11.22□□□□□ -0.61
HMGB1P1-201ENST00000522557 PDIA6Q15084 440 aa11.19□□□□□ -0.62
HMGB1P1-201ENST00000522557 VSIG10Q8N0Z9 540 aa11.19□□□□□ -0.62
HMGB1P1-201ENST00000522557 JPH4Q96JJ6 628 aa11.19□□□□□ -0.62
HMGB1P1-201ENST00000522557 PCDHGA10Q9Y5H3 936 aa11.18□□□□□ -0.62
HMGB1P1-201ENST00000522557 SPDYE16A6NNV3 312 aaPredicted RBP11.17□□□□□ -0.62
HMGB1P1-201ENST00000522557 DDX12PQ92771 950 aa11.17□□□□□ -0.62
HMGB1P1-201ENST00000522557 ARHGEF1Q92888 912 aaKnown RBP11.16□□□□□ -0.62
HMGB1P1-201ENST00000522557 ARHGAP33O14559 1287 aa11.15□□□□□ -0.62
HMGB1P1-201ENST00000522557 PTGER2P43116 358 aa11.15□□□□□ -0.62
HMGB1P1-201ENST00000522557 PSEN2P49810 448 aa11.15□□□□□ -0.62
HMGB1P1-201ENST00000522557 ZDHHC16Q969W1 377 aa11.15□□□□□ -0.62
HMGB1P1-201ENST00000522557 PHF14O94880 888 aa11.14□□□□□ -0.63
HMGB1P1-201ENST00000522557 PBX2P40425 430 aa11.14□□□□□ -0.63
HMGB1P1-201ENST00000522557 ADAM33Q9BZ11 813 aa11.14□□□□□ -0.63
HMGB1P1-201ENST00000522557 ANKRD13DQ6ZTN6 518 aa11.13□□□□□ -0.63
HMGB1P1-201ENST00000522557 PLSCR2Q9NRY7 297 aa11.13□□□□□ -0.63
HMGB1P1-201ENST00000522557 LSM11P83369 360 aaKnown RBP eCLIP11.12□□□□□ -0.63
HMGB1P1-201ENST00000522557 DMRTA1Q5VZB9 504 aa11.12□□□□□ -0.63
HMGB1P1-201ENST00000522557 SPNS2Q8IVW8 549 aa11.12□□□□□ -0.63
HMGB1P1-201ENST00000522557 BCL2L12Q9HB09 334 aa11.12□□□□□ -0.63
HMGB1P1-201ENST00000522557 TYW1BQ6NUM6 668 aa11.11□□□□□ -0.63
HMGB1P1-201ENST00000522557 KCNK17Q96T54 332 aa11.11□□□□□ -0.63
HMGB1P1-201ENST00000522557 GRXCR2A6NFK2 248 aa11.1□□□□□ -0.63
HMGB1P1-201ENST00000522557 P3H3Q8IVL6 736 aa11.1□□□□□ -0.63
HMGB1P1-201ENST00000522557 EPAS1Q99814 870 aa11.09□□□□□ -0.63
HMGB1P1-201ENST00000522557 RBM33Q96EV2 1170 aaKnown RBP11.08□□□□□ -0.64
HMGB1P1-201ENST00000522557 PTPREP23469 700 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms