RNA–Protein interactions for RNA: ENST00000521941.1

CTNNA1-231, Transcript of catenin alpha 1, human

TSL 3

Gene CTNNA1, Length 224 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNNA1-231	ENST00000521941	RICTOR	Q6R327	1708 aa		13.28	□□□□□ -0.28
CTNNA1-231	ENST00000521941	DENND4B	O75064	1496 aa	Predicted RBP	13.28	□□□□□ -0.28
CTNNA1-231	ENST00000521941	TIAM1	Q13009	1591 aa		13.28	□□□□□ -0.28
CTNNA1-231	ENST00000521941	EFCAB2	Q5VUJ9	269 aa		13.25	□□□□□ -0.29
CTNNA1-231	ENST00000521941	SCAPER	Q9BY12	1400 aa		13.24	□□□□□ -0.29
CTNNA1-231	ENST00000521941	AEBP2	Q6ZN18	517 aa	Predicted RBP	13.24	□□□□□ -0.29
CTNNA1-231	ENST00000521941	SUPT6H	Q7KZ85	1726 aa	Known RBP	13.23	□□□□□ -0.29
CTNNA1-231	ENST00000521941	POGZ	Q7Z3K3	1410 aa		13.22	□□□□□ -0.29
CTNNA1-231	ENST00000521941	CCNB3	Q8WWL7	1395 aa		13.22	□□□□□ -0.29
CTNNA1-231	ENST00000521941	ITSN2	Q9NZM3	1697 aa		13.22	□□□□□ -0.29
CTNNA1-231	ENST00000521941	ZNF777	Q9ULD5	760 aa	Predicted RBP	13.22	□□□□□ -0.29
CTNNA1-231	ENST00000521941	ABCC1	P33527	1531 aa		13.22	□□□□□ -0.29
CTNNA1-231	ENST00000521941	ARHGEF40	Q8TER5	1519 aa		13.22	□□□□□ -0.29
CTNNA1-231	ENST00000521941	ZMYM4	Q5VZL5	1548 aa		13.21	□□□□□ -0.29
CTNNA1-231	ENST00000521941	SAMD9L	Q8IVG5	1584 aa		13.2	□□□□□ -0.3
CTNNA1-231	ENST00000521941	ZFYVE16	Q7Z3T8	1539 aa		13.2	□□□□□ -0.3
CTNNA1-231	ENST00000521941	GPATCH8	Q9UKJ3	1502 aa	Known RBP	13.2	□□□□□ -0.3
CTNNA1-231	ENST00000521941	SYCP2	Q9BX26	1530 aa		13.19	□□□□□ -0.3
CTNNA1-231	ENST00000521941	NCOA2	Q15596	1464 aa		13.19	□□□□□ -0.3
CTNNA1-231	ENST00000521941	LRRC9	Q6ZRR7	1453 aa		13.19	□□□□□ -0.3
CTNNA1-231	ENST00000521941	MYT1L	Q9UL68	1186 aa		13.19	□□□□□ -0.3
CTNNA1-231	ENST00000521941	ZNF518A	Q6AHZ1	1483 aa		13.18	□□□□□ -0.3
CTNNA1-231	ENST00000521941	YEATS2	Q9ULM3	1422 aa		13.18	□□□□□ -0.3
CTNNA1-231	ENST00000521941	HECW2	Q9P2P5	1572 aa		13.17	□□□□□ -0.3
CTNNA1-231	ENST00000521941	KDM4F	A0A1W2PPD8	638 aa		13.17	□□□□□ -0.3
CTNNA1-231	ENST00000521941	APLP2	Q06481	763 aa		13.17	□□□□□ -0.3
CTNNA1-231	ENST00000521941	CFDP1	Q9UEE9	299 aa	Predicted RBP	13.17	□□□□□ -0.3
CTNNA1-231	ENST00000521941	ARHGEF12	Q9NZN5	1544 aa		13.17	□□□□□ -0.3
CTNNA1-231	ENST00000521941	MAP3K1	Q13233	1512 aa		13.16	□□□□□ -0.3
CTNNA1-231	ENST00000521941	KDM5C	P41229	1560 aa		13.15	□□□□□ -0.3
CTNNA1-231	ENST00000521941	ARID4B	Q4LE39	1312 aa	Predicted RBP	13.15	□□□□□ -0.3
CTNNA1-231	ENST00000521941	TRAPPC8	Q9Y2L5	1435 aa		13.15	□□□□□ -0.3
CTNNA1-231	ENST00000521941	KANK4	Q5T7N3	995 aa	Predicted RBP	13.15	□□□□□ -0.3
CTNNA1-231	ENST00000521941	AFAP1	Q8N556	730 aa		13.15	□□□□□ -0.3
CTNNA1-231	ENST00000521941	SIGLEC1	Q9BZZ2	1709 aa		13.13	□□□□□ -0.31
CTNNA1-231	ENST00000521941	MAGI2	Q86UL8	1455 aa		13.13	□□□□□ -0.31
CTNNA1-231	ENST00000521941	ABCA6	Q8N139	1617 aa		13.13	□□□□□ -0.31
CTNNA1-231	ENST00000521941	HNRNPM	P52272	730 aa	Known RBP eCLIP	13.12	□□□□□ -0.31	7e-14	■■■■■ 45.2
CTNNA1-231	ENST00000521941	BCORL1	Q5H9F3	1711 aa		13.12	□□□□□ -0.31
CTNNA1-231	ENST00000521941	ZNF644	Q9H582	1327 aa	Predicted RBP	13.12	□□□□□ -0.31
CTNNA1-231	ENST00000521941	DIP2C	Q9Y2E4	1556 aa		13.11	□□□□□ -0.31
CTNNA1-231	ENST00000521941	CAMSAP2	Q08AD1	1489 aa		13.11	□□□□□ -0.31
CTNNA1-231	ENST00000521941	PLEKHH2	Q8IVE3	1493 aa		13.11	□□□□□ -0.31
CTNNA1-231	ENST00000521941	KIDINS220	Q9ULH0	1771 aa		13.1	□□□□□ -0.31
CTNNA1-231	ENST00000521941	C9orf84	Q5VXU9	1444 aa		13.1	□□□□□ -0.31
CTNNA1-231	ENST00000521941	MADD	Q8WXG6	1647 aa		13.1	□□□□□ -0.31
CTNNA1-231	ENST00000521941	MLEC	Q14165	292 aa		13.08	□□□□□ -0.32
CTNNA1-231	ENST00000521941	ATP10A	O60312	1499 aa		13.08	□□□□□ -0.32
CTNNA1-231	ENST00000521941	MLH3	Q9UHC1	1453 aa		13.08	□□□□□ -0.32
CTNNA1-231	ENST00000521941	ADAMTSL3	P82987	1691 aa		13.08	□□□□□ -0.32
CTNNA1-231	ENST00000521941	RIMS1	Q86UR5	1692 aa	Known RBP	13.08	□□□□□ -0.32
CTNNA1-231	ENST00000521941	ATP7A	Q04656	1500 aa		13.08	□□□□□ -0.32
CTNNA1-231	ENST00000521941	INO80	Q9ULG1	1556 aa	Predicted RBP	13.07	□□□□□ -0.32
CTNNA1-231	ENST00000521941	KIAA1107	Q9UPP5	1409 aa		13.07	□□□□□ -0.32
CTNNA1-231	ENST00000521941	SPAG9	O60271	1321 aa	Known RBP	13.07	□□□□□ -0.32
CTNNA1-231	ENST00000521941	MYOM3	Q5VTT5	1437 aa		13.06	□□□□□ -0.32
CTNNA1-231	ENST00000521941	FER1L4	A9Z1Z3	1794 aa		13.05	□□□□□ -0.32
CTNNA1-231	ENST00000521941	CCDC141	Q6ZP82	1450 aa		13.04	□□□□□ -0.32
CTNNA1-231	ENST00000521941	MBD5	Q9P267	1494 aa		13.04	□□□□□ -0.32
CTNNA1-231	ENST00000521941	PLPPR3	Q6T4P5	718 aa		13.04	□□□□□ -0.32
CTNNA1-231	ENST00000521941	PTPN23	Q9H3S7	1636 aa		13.03	□□□□□ -0.32
CTNNA1-231	ENST00000521941	RERE	Q9P2R6	1566 aa		13.03	□□□□□ -0.32
CTNNA1-231	ENST00000521941	ARHGEF5	Q12774	1597 aa		13.02	□□□□□ -0.33
CTNNA1-231	ENST00000521941	PPARGC1B	Q86YN6	1023 aa	Known RBP	13.01	□□□□□ -0.33
CTNNA1-231	ENST00000521941	MIA2	Q96PC5	1412 aa		13.01	□□□□□ -0.33
CTNNA1-231	ENST00000521941	PTPRM	P28827	1452 aa		13.01	□□□□□ -0.33
CTNNA1-231	ENST00000521941	ADGB	Q8N7X0	1667 aa		13.01	□□□□□ -0.33
CTNNA1-231	ENST00000521941	FGD6	Q6ZV73	1430 aa		12.99	□□□□□ -0.33
CTNNA1-231	ENST00000521941	A2M	P01023	1474 aa		12.98	□□□□□ -0.33
CTNNA1-231	ENST00000521941	CROCC2	H7BZ55	1655 aa		12.98	□□□□□ -0.33
CTNNA1-231	ENST00000521941	PLXNC1	O60486	1568 aa		12.98	□□□□□ -0.33
CTNNA1-231	ENST00000521941	AGL	P35573	1532 aa		12.98	□□□□□ -0.33
CTNNA1-231	ENST00000521941	RTEL1-TNFRSF6B	F6WH68	1400 aa		12.96	□□□□□ -0.34
CTNNA1-231	ENST00000521941	TSPY4	P0CV99	314 aa		12.95	□□□□□ -0.34
CTNNA1-231	ENST00000521941	TSPY10	P0CW01	314 aa		12.95	□□□□□ -0.34
CTNNA1-231	ENST00000521941	DNMT1	P26358	1616 aa	Known RBP	12.95	□□□□□ -0.34
CTNNA1-231	ENST00000521941	MAST1	Q9Y2H9	1570 aa		12.94	□□□□□ -0.34
CTNNA1-231	ENST00000521941	TCOF1	Q13428	1488 aa	Known RBP	12.94	□□□□□ -0.34
CTNNA1-231	ENST00000521941	FAM50A	Q14320	339 aa	Known RBP	12.94	□□□□□ -0.34
CTNNA1-231	ENST00000521941	RSPH4A	Q5TD94	716 aa		12.94	□□□□□ -0.34
CTNNA1-231	ENST00000521941	ESF1	Q9H501	851 aa	Known RBP	12.93	□□□□□ -0.34
CTNNA1-231	ENST00000521941	DAPK1	P53355	1430 aa		12.93	□□□□□ -0.34
CTNNA1-231	ENST00000521941	CLTC	Q00610	1675 aa	Known RBP	12.93	□□□□□ -0.34
CTNNA1-231	ENST00000521941	GGT6	Q6P531	493 aa		12.92	□□□□□ -0.34
CTNNA1-231	ENST00000521941	ABCC5	O15440	1437 aa		12.91	□□□□□ -0.34
CTNNA1-231	ENST00000521941	C3	P01024	1663 aa		12.91	□□□□□ -0.34
CTNNA1-231	ENST00000521941	SHANK2	Q9UPX8	1470 aa		12.91	□□□□□ -0.34
CTNNA1-231	ENST00000521941	CEBPA	P49715	358 aa	Predicted RBP	12.9	□□□□□ -0.34
CTNNA1-231	ENST00000521941	DHX29	Q7Z478	1369 aa	Known RBP	12.9	□□□□□ -0.34
CTNNA1-231	ENST00000521941	KIF3B	O15066	747 aa		12.89	□□□□□ -0.35
CTNNA1-231	ENST00000521941	CHIC2	Q9UKJ5	165 aa		12.89	□□□□□ -0.35
CTNNA1-231	ENST00000521941	MROH2A	A6NES4	1674 aa		12.88	□□□□□ -0.35
CTNNA1-231	ENST00000521941	KIF15	Q9NS87	1388 aa		12.87	□□□□□ -0.35
CTNNA1-231	ENST00000521941	CNTLN	Q9NXG0	1405 aa		12.87	□□□□□ -0.35
CTNNA1-231	ENST00000521941	RRP7BP	Q9NSQ0	103 aa		12.86	□□□□□ -0.35
CTNNA1-231	ENST00000521941	EIF2AK4	Q9P2K8	1649 aa	Known RBP	12.86	□□□□□ -0.35
CTNNA1-231	ENST00000521941	DUOX2	Q9NRD8	1548 aa		12.86	□□□□□ -0.35
CTNNA1-231	ENST00000521941	PREX1	Q8TCU6	1659 aa		12.86	□□□□□ -0.35
CTNNA1-231	ENST00000521941	LMTK3	Q96Q04	1460 aa		12.85	□□□□□ -0.35
CTNNA1-231	ENST00000521941	RNF17	Q9BXT8	1623 aa	Known RBP	12.84	□□□□□ -0.35

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